mRNA_P-wetherbeei_contig17737.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17737.1.1
Unique NamemRNA_P-wetherbeei_contig17737.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Match: A0A835YKF3_9STRA (PapD-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKF3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 8.890e-25
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEFWASGEKDATNKFLVQSLAMTHEQHAAYRERSATEQANELTELWVSTAGERTEGLRQKKLKVAF 327
            +AFKVKTTKP+R+LVRPNQG+V PG +ET  I LLA E R + EE   +G  D +NKFLVQ++A+  +    + +    EQ N LT+LW + +  + + ++QKKL+VAF
Sbjct:   40 VAFKVKTTKPKRYLVRPNQGLVMPGGSETSTITLLAAEARVIFEEHAQTGVWDDSNKFLVQTVAVDGDFFNTFNQSGPKEQTNMLTDLWSNIS--KQKAVKQKKLRVAF 146          
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Match: A0A7S0UGK8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGK8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.190e-17
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    1 MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEF---WASGEKDATNKFLVQSLAMTHEQHAAYRERSATEQANELTELWVS-TAGERTEGLRQKKLKV 321
            +AFKVKTT+PRR+LVRPNQG++ PGT+ET+ I+L+ ++++ LL+ +     SG   + +KFLVQS A      AA +  S TE  + LT +W S T+G  +  L+ KKL V
Sbjct:   41 IAFKVKTTQPRRYLVRPNQGLIAPGTSETISILLVEKDKQVLLQNYDRLGQSGLDHSKDKFLVQSCA-ADSSLAAKKSGSQTELYDALTAMWNSVTSGGSSTPLQNKKLHV 150          
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Match: A0A1E7FVV3_9STRA (MSP domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVV3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.520e-17
Identity = 50/111 (45.05%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    1 MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEF---WASGEKDATNKFLVQSLAMTHEQHAAYRERSATEQANELTELWVS-TAGERTEGLRQKKLKV 321
            +AFKVKTT+PRR+LVRPNQG++ PGT+ET+ I+L+ ++++ALL+ +     SG   + +KFLVQS  +  +  AA +  S T+  + LT +W S T+G  +  L+ KKL V
Sbjct:   13 IAFKVKTTQPRRYLVRPNQGLIAPGTSETISILLVEKDKQALLQSYERLGQSGLDHSKDKFLVQSCTVD-KTFAAKKLGSQTDLYDALTTMWNSVTSGGSSAALQNKKLHV 122          
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Match: A0A7S4QY17_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY17_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.180e-15
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:    1 MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEFWASGEK---DATNKFLVQSLAMTHEQHAAYRE------------RSATEQANELTELWVSTAGERTEGLRQKKLKV 321
            +AFKVKTT+PRR+LVRPNQG+V P +TETV I+L+ ++++ LL+ +   G+     + +KFLVQS A   E  + Y +            +++ E A +LT LW  T+      +  KKL V
Sbjct:   58 LAFKVKTTQPRRYLVRPNQGIVAPNSTETVSILLVEKDKQILLQSYDRLGQSALDHSKDKFLVQSCAAPDEFASLYDKEKRGDEQKSDGYKTSKEMAEKLTSLWDKTSTSGESPVFNKKLHV 179          
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Match: A0A6U6EE94_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6EE94_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.940e-15
Identity = 52/131 (39.69%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    1 MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEFWASGEK---DATNKFLVQSLAMTHEQHAAYR-ERS---------------ATEQANELTELWVSTAGERTEGLRQKKLKVAFGYP 336
            +AFKVKTT+PRR+LVRPNQGVV P +TETV I+L+ ++++ LL  +   G+     + +KFLVQS A+T +  + Y  ERS               + E A+ LT +W + A   +  +  KKL V    P
Sbjct:   56 LAFKVKTTQPRRYLVRPNQGVVAPNSTETVSILLVERDKQILLHSYDRLGQSALDHSKDKFLVQSCAVTDDFASRYMDERSKAKKIDDSGAKASGMSKEMADSLTSMWNAVASGGSVPIFNKKLHVRHVVP 186          
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Match: A0A1Z5K8X9_FISSO (Vesicle-associated membrane protein-associated protein A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8X9_FISSO)

HSP 1 Score: 79.3 bits (194), Expect = 4.940e-15
Identity = 45/113 (39.82%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEFWASGEK---DATNKFLVQSLAMTHEQHAAYRERSATEQANELTELWVSTAGE---RTEGLRQKKLKV 321
            +AFKVKTT+PRR+LVRPNQG+++PG  +TV+I+L+ +E+ +LL+ +   G+     + +KFLVQS+A+      A     + +  +ELT LW +        T  +  KKL V
Sbjct:   48 IAFKVKTTQPRRYLVRPNQGLIEPGGAQTVQILLVEKEKNSLLQSYERLGQPTLDQSKDKFLVQSVAILDASKLA-----SLKDYDELTSLWATVGNSPSTSTSAVANKKLHV 155          
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Match: D8LLY4_ECTSI (MSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.420e-14
Identity = 51/112 (45.54%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    1 MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEFWASGEKDATNKFLVQSLAMTHEQHAAYRERSATEQANELTELWVSTAGERTEGLRQKKLKVAFGYP 336
            +AFKVKTTKP+R+LVRPNQGVV P     V I+LLA ++  L+ EF  +G  + TNKF+VQ+L +  E        SAT  A     LW     E    ++QKKL V F +P
Sbjct:   43 VAFKVKTTKPKRYLVRPNQGVVAPSEDLPVSIVLLAHDKVGLISEFMQTGGCNETNKFMVQALPLQGE--------SATAGAVP-PGLWK----EAKARVQQKKLVVHFTFP 141          
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Match: A0A7S2RAX6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RAX6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.900e-14
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEFWASGEK---DATNKFLVQSLAMTHEQHAAYRE------------RSATEQANELTELWVSTAG 282
            +AFKVKTT+PRR+LVRPNQGVV PGTTE V I+L+ ++++ LL+ +   G+     + +KFLVQS     +  + Y              R+  E A  LT +W S AG
Sbjct:   53 LAFKVKTTQPRRYLVRPNQGVVAPGTTEKVTILLVEKDKQILLQSYDRLGQTALDHSKDKFLVQSCTTPDDFASRYMSAKADSTDDSEGNRATKELAESLTTMWNSAAG 161          
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Match: A0A7S2XZQ3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZQ3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.250e-14
Identity = 46/121 (38.02%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEFWASGE-----KDATNKFLVQSLAMTHEQHAAYRER----SATEQANELTELWVSTAGERTEGLRQKKLKVAFGYP 336
            MAFK+KTT+P+R+LVRPNQG++ PG ++T+ I L+ ++R  LL    A+G      +++T+KFLVQ  +M   +   YR+R    +  E  +E+ +LW    G++   +R K+++V F  P
Sbjct:   82 MAFKIKTTQPKRYLVRPNQGLILPGQSQTIEISLVDKDRIYLLNAAQAAGSTEGINRESTDKFLVQCFSM---EVGYYRDRLQSLAPKEATDEIGKLW-GVVGKKH--VRNKRMRVLFNLP 196          
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Match: A0A7S2KGL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KGL7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.400e-14
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEFWASGEK---DATNKFLVQSLAMTHEQHAAYRERSAT---------EQANELTELWVSTAGERTEGLRQKKLKV 321
            +AFKVKTT+PRR+LVRPNQG+V P ++ETV I+L+ ++R+ L   +   G+     + +KFLVQS A++ +  A ++              E   ELT +W   + +    +  KKL V
Sbjct:   49 LAFKVKTTQPRRYLVRPNQGIVAPNSSETVSILLVDKDRQVLYSTYERLGQSALDHSKDKFLVQSCAVSDDFSAKFQNEPRMGGEGGQYKKELVEELTAMWNKASSDSNLPVYNKKLHV 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17737.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKF3_9STRA8.890e-2548.62PapD-like protein (Fragment) n=1 Tax=Tribonema min... [more]
A0A7S0UGK8_9STRA2.190e-1745.95Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7FVV3_9STRA2.520e-1745.05MSP domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S4QY17_9STRA3.180e-1539.34Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6U6EE94_9STRA3.940e-1539.69Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A1Z5K8X9_FISSO4.940e-1539.82Vesicle-associated membrane protein-associated pro... [more]
D8LLY4_ECTSI1.420e-1445.54MSP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2RAX6_9STRA1.900e-1442.20Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2XZQ3_9STRA5.250e-1438.02Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A7S2KGL7_9STRA5.400e-1436.97Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17737contigP-wetherbeei_contig17737:563..1346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr48918
PFAMsMotile_Sperm
Model size402
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.15e-17
EggNOG OGsCOG5066@1|root,KOG0439@2759|Eukaryota,2XBZX@2836|Bacillariophyta
Ec32 ortholog descriptionMSP domain
Ec32 orthologEc-14_002110.1
DescriptionMSP (Major sperm protein) domain
Cds size402
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186125.3555105-CDS-P-wetherbeei_contig17737:562..8141683186125.3555105-CDS-P-wetherbeei_contig17737:562..814Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17737 563..814 +
1683186125.3705049-CDS-P-wetherbeei_contig17737:1196..13461683186125.3705049-CDS-P-wetherbeei_contig17737:1196..1346Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17737 1197..1346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17737.1.1prot_P-wetherbeei_contig17737.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17737 563..1346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17737.1.1

>prot_P-wetherbeei_contig17737.1.1 ID=prot_P-wetherbeei_contig17737.1.1|Name=mRNA_P-wetherbeei_contig17737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MAFKVKTTKPRRFLVRPNQGVVQPGTTETVRIILLAQERRALLEEFWASG
EKDATNKFLVQSLAMTHEQHAAYRERSATEQANELTELWVSTAGERTEGL
RQKKLKVAFGYPVAAASRLAGSAAASAAAAAKSP
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mRNA from alignment at P-wetherbeei_contig17737:563..1346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17737.1.1 ID=mRNA_P-wetherbeei_contig17737.1.1|Name=mRNA_P-wetherbeei_contig17737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=784bp|location=Sequence derived from alignment at P-wetherbeei_contig17737:563..1346+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTTCAAGGTCAAAACCACCAAGCCACGGCGGTTCCTCGTCCGCCC CAACCAGGGCGTCGTGCAGCCCGGCACCACCGAAACGGTCCGGATCATCT TGCTGGCGCAGGAACGGCGGGCGCTTCTCGAGGAATTTTGGGCGTCGGGA GAGAAGGATGCCACCAACAAATTTCTGGTGCAGAGCCTCGCGATGACGCA CGAGCAGCATGCGGCATACCGTGAGAGGAGCGCCACGGAGCAGGCGAACG AAGTGAGTTCGCCTAGTGCCTTTCTCTTTCGTTTGCAGAGCTTGCTTCTC TCAAAGCGTTGCGTGTCTCTTTTCGTATGGCGCTGTGTTCTCTTCCGTTG CTTCGTGCGGTCTTCTTTTCCCGACCGGTGCTGTACCGACGCTGAACCAC ATGGCATTTATTCGGTCACTGGAGAGCTTCGTGCTGCTGCCGTTTACAAG TGCCACTTAGAATTCACCCTCTGTGTCAACGCTGCCGCTTTCGTGCTTGT CGTTGCGTGTTCTTATCAGCAGCTTTCTATTGCTTCTGCCGCTCTTCGCG ATTCTTCTTCCCTTCTGGCGATTCCTTCTCATCAACAGCGTCATGTCACA ACGTACTGCCCGCATGCTCTTCTCCTCTTTTCAGCTGACGGAGCTGTGGG TGTCCACGGCGGGCGAGAGGACGGAGGGCCTCCGGCAAAAGAAGCTCAAA GTGGCGTTCGGCTACCCGGTCGCCGCCGCGTCCCGCCTCGCCGGGAGCGC CGCCGCCTCCGCAGCCGCCGCCGCAAAATCTCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17737:563..1346+

>mRNA_P-wetherbeei_contig17737.1.1 ID=mRNA_P-wetherbeei_contig17737.1.1|Name=mRNA_P-wetherbeei_contig17737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig17737:563..1346+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTTCAAGGTCAAAACCACCAAGCCACGGCGGTTCCTCGTCCGCCC
CAACCAGGGCGTCGTGCAGCCCGGCACCACCGAAACGGTCCGGATCATCT
TGCTGGCGCAGGAACGGCGGGCGCTTCTCGAGGAATTTTGGGCGTCGGGA
GAGAAGGATGCCACCAACAAATTTCTGGTGCAGAGCCTCGCGATGACGCA
CGAGCAGCATGCGGCATACCGTGAGAGGAGCGCCACGGAGCAGGCGAACG
AACTGACGGAGCTGTGGGTGTCCACGGCGGGCGAGAGGACGGAGGGCCTC
CGGCAAAAGAAGCTCAAAGTGGCGTTCGGCTACCCGGTCGCCGCCGCGTC
CCGCCTCGCCGGGAGCGCCGCCGCCTCCGCAGCCGCCGCCGCAAAATCTC
CG
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