mRNA_P-wetherbeei_contig17460.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17460.1.1
Unique NamemRNA_P-wetherbeei_contig17460.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17460.1.1 vs. uniprot
Match: A0A4V3KA88_9HYPH (Uncharacterized protein n=5 Tax=Bacteria TaxID=2 RepID=A0A4V3KA88_9HYPH)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:  124 FLPSLLLGLYVAHLEGRRLSKRDACVLMNADPTTSGPKYISLAEGHGLVDIIRKPPEDRRKDFVVPTRALLERVEQELAALAGTS 378
            ++  LL+ +Y+ HLEG+ +S+  AC L+ AD   +  KY++ AE  G V     P + RRK+ V+PT+ L++ VE    A   T+
Sbjct:   40 YIDRLLMNIYLRHLEGKTVSRSQACKLIPADHLDTCKKYVAEAERLGFVAFQNDPKDGRRKN-VIPTQGLIDYVEARARATLDTA 123
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BLAST of mRNA_P-wetherbeei_contig17460.1.1 vs. uniprot
Match: A0A839YLX4_9SPHN (HTH marR-type domain-containing protein n=2 Tax=unclassified Sphingomonas TaxID=196159 RepID=A0A839YLX4_9SPHN)

HSP 1 Score: 52.4 bits (124), Expect = 2.200e-5
Identity = 44/118 (37.29%), Postives = 59/118 (50.00%), Query Frame = 1 
Query:   25 AKPSRSVAVDSARLLAFMRGEWLDKGFSGEARRFLPS--LLLGLYVAHLEGRRLSKRDACVLMNADPTTSGPKYISLAEGHGLVDIIRKP-PEDRRKDFVVPTRALLERVEQELAALA 369
            A P+ +VAV +A+L A +R   L   F G+     P+  +LL LY A LEGRR+S    C+     PTT+      L E   L    R P P DRR+ F+  T   +  +E  L ALA
Sbjct:  185 AAPAAAVAVTAAQLRAVLRARRLRDRFLGKGLCEDPAWDMLLDLYAARLEGRRVSVSSLCIAAAVAPTTALRWITRLTERRLLA---RTPDPGDRRRVFIGLTDEAVRALEAYLGALA 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17460.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4V3KA88_9HYPH1.260e-836.47Uncharacterized protein n=5 Tax=Bacteria TaxID=2 R... [more]
A0A839YLX4_9SPHN2.200e-537.29HTH marR-type domain-containing protein n=2 Tax=un... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17460contigP-wetherbeei_contig17460:1002..1379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1007104.SUS17_3997
PFAMsHTH_27,MarR
Model size378
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.24e-05
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria,1N2Q4@1224|Proteobacteria,2UC5A@28211|Alphaproteobacteria,2K54U@204457|Sphingomonadales
DescriptionTranscriptional regulator
Cds size378
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.0978308-CDS-P-wetherbeei_contig17460:1001..13791683186118.0978308-CDS-P-wetherbeei_contig17460:1001..1379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17460 1002..1379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17460.1.1prot_P-wetherbeei_contig17460.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17460 1002..1379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17460.1.1

>prot_P-wetherbeei_contig17460.1.1 ID=prot_P-wetherbeei_contig17460.1.1|Name=mRNA_P-wetherbeei_contig17460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MAAVNARRAKPSRSVAVDSARLLAFMRGEWLDKGFSGEARRFLPSLLLGL
YVAHLEGRRLSKRDACVLMNADPTTSGPKYISLAEGHGLVDIIRKPPEDR
RKDFVVPTRALLERVEQELAALAGTS
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mRNA from alignment at P-wetherbeei_contig17460:1002..1379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17460.1.1 ID=mRNA_P-wetherbeei_contig17460.1.1|Name=mRNA_P-wetherbeei_contig17460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig17460:1002..1379+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGGTTAATGCCAGGCGAGCGAAGCCCAGCCGATCGGTGGCGGT
CGACTCTGCACGCCTACTTGCGTTCATGCGCGGTGAGTGGTTGGACAAAG
GATTTTCCGGCGAGGCACGCCGTTTTCTGCCGAGCTTGTTGCTTGGGCTG
TATGTGGCTCACTTGGAAGGTCGCAGACTCAGCAAGCGAGATGCGTGCGT
TCTGATGAACGCCGATCCTACAACAAGCGGTCCCAAATATATCTCGCTCG
CCGAAGGGCATGGGCTGGTCGATATCATTCGGAAACCGCCGGAAGATCGT
CGGAAAGATTTCGTGGTGCCGACGAGAGCGCTGCTGGAGCGGGTCGAGCA
AGAACTTGCTGCGCTCGCGGGCACTAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17460:1002..1379+

>mRNA_P-wetherbeei_contig17460.1.1 ID=mRNA_P-wetherbeei_contig17460.1.1|Name=mRNA_P-wetherbeei_contig17460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig17460:1002..1379+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGGTTAATGCCAGGCGAGCGAAGCCCAGCCGATCGGTGGCGGT
CGACTCTGCACGCCTACTTGCGTTCATGCGCGGTGAGTGGTTGGACAAAG
GATTTTCCGGCGAGGCACGCCGTTTTCTGCCGAGCTTGTTGCTTGGGCTG
TATGTGGCTCACTTGGAAGGTCGCAGACTCAGCAAGCGAGATGCGTGCGT
TCTGATGAACGCCGATCCTACAACAAGCGGTCCCAAATATATCTCGCTCG
CCGAAGGGCATGGGCTGGTCGATATCATTCGGAAACCGCCGGAAGATCGT
CGGAAAGATTTCGTGGTGCCGACGAGAGCGCTGCTGGAGCGGGTCGAGCA
AGAACTTGCTGCGCTCGCGGGCACTAGC
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