mRNA_P-wetherbeei_contig17435.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17435.2.1
Unique NamemRNA_P-wetherbeei_contig17435.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Match: A0A7X8XMY9_9BURK (Flagellar biosynthetic protein FliQ n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XMY9_9BURK)

HSP 1 Score: 123 bits (309), Expect = 9.100e-35
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    1 GEEYFSAEFVMEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLTVTFLSCLICGNWICQMLAGFAVRVFSEIGHMGP 279
            G E FS  +V+ I+TQALYLIL LSAPML++AL VGL+IS+LQATTQ+QEQTLSFVPK+  TFLS ++CG WI  ML+ FA+R+FS+I +MGP
Sbjct:    5 GAELFSESYVLAITTQALYLILTLSAPMLISALAVGLMISILQATTQVQEQTLSFVPKIVATFLSVVLCGTWIFNMLSNFAIRLFSDIANMGP 97          
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Match: A0A355TRV8_9BACT (Flagellar biosynthetic protein FliQ n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TRV8_9BACT)

HSP 1 Score: 110 bits (275), Expect = 1.370e-29
Identity = 51/93 (54.84%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 GEEYFSAEFVMEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLTVTFLSCLICGNWICQMLAGFAVRVFSEIGHMGP 279
            G E F   FV+ + T+ALYL+L+LSAPMLM+AL VGL++S++QATTQ++EQTLSFVPK+  TF++ ++CGNW+  ML+ F +  F++I  +GP
Sbjct:    5 GAEVFDDGFVLALCTKALYLVLILSAPMLMSALSVGLMVSIVQATTQVEEQTLSFVPKIIATFMAIVLCGNWMFNMLSSFTISTFADIARLGP 97          
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Match: A0A7Z9PW11_9BACT (Flagellar biosynthetic protein FliQ n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PW11_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 1.900e-24
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 1
Query:   31 MEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLTVTFLSCLICGNWICQMLAGFAVRVFSEIGHMGP 279
            MEIST+ L+LI+LLSAPML++AL VGLVIS++QATTQIQEQTL+ VPK+ +TF+S ++CG WI   L+ +A  +F  I  MGP
Sbjct:    1 MEISTRGLFLIMLLSAPMLISALCVGLVISIIQATTQIQEQTLASVPKMGITFVSLIVCGPWIMDSLSTYARELFQYIALMGP 83          
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Match: A0A7C6DQJ3_9BACT (Flagellar biosynthetic protein FliQ n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C6DQJ3_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 5.590e-20
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   16 SAEFVMEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLTVTFLSCLICGNWICQMLAGFAVRVFSEIGHM 273
            SA  VM   TQA+YLI++LSAP+L+ ++ VGLVIS+LQA TQIQEQTLSFVPKL  TF+   +  +WI   L  FA++VF  I ++
Sbjct:    2 SAFDVMNFVTQAMYLIVVLSAPILLTSMIVGLVISLLQAVTQIQEQTLSFVPKLVATFIVIALVASWIANSLYSFAIQVFEYISNI 87          
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Match: A0A1A5YN07_9BACL (Flagellar biosynthetic protein FliQ n=1 Tax=Paenibacillus oryzae TaxID=1844972 RepID=A0A1A5YN07_9BACL)

HSP 1 Score: 85.5 bits (210), Expect = 8.150e-20
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   16 SAEFVMEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLTVTFLSCLICGNWICQMLAGFAVRVFSEI 264
            SAEFV+ +++ ALY +L  SAPML+ AL VGL+ISV QATTQIQEQTL+FVPK+   F++ +I G WI   +  F  R+FS +
Sbjct:    2 SAEFVIGLASSALYTVLKASAPMLVLALVVGLLISVFQATTQIQEQTLAFVPKIVAVFIAVIIFGPWILNTVVDFTYRLFSNL 84          
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Match: A0A7X7S870_9FIRM (Flagellar biosynthetic protein FliQ n=1 Tax=Syntrophomonadaceae bacterium TaxID=2093811 RepID=A0A7X7S870_9FIRM)

HSP 1 Score: 84.7 bits (208), Expect = 1.640e-19
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   16 SAEFVMEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLTVTFLSCLICGNWICQMLAGFAVRVFSEIGHM 273
            S+E VM ++ + L + L+L+AP L  +L  GL ISVLQA TQIQEQTL+FVPK+ V FLS ++CG W+ +++  +AV +FS +G M
Sbjct:    2 SSEMVMSLAREGLMVALVLAAPALGLSLLTGLAISVLQAVTQIQEQTLTFVPKIVVVFLSFVVCGPWMLRVVTSYAVNIFSNLGAM 87          
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Match: A0A7C6UP16_9FIRM (Flagellar biosynthetic protein FliQ n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7C6UP16_9FIRM)

HSP 1 Score: 83.2 bits (204), Expect = 6.650e-19
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   22 EFVMEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLTVTFLSCLICGNWICQMLAGFAVRVFSEIGHM 273
            +F++ +  +A+Y ILLLS P+L  +L VGL+ISV QATTQIQEQTL+FVPK+ + F+S +I G+W+  ++  F   +FS I H+
Sbjct:    4 DFIIYLGKEAVYTILLLSGPLLGVSLLVGLLISVFQATTQIQEQTLTFVPKIVMVFISLVIFGSWMLNLIVTFTTNLFSSIPHL 87          
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Match: UPI001951A22B (flagellar biosynthesis protein FliQ n=1 Tax=Bacillus sp. RD4P76 TaxID=2810349 RepID=UPI001951A22B)

HSP 1 Score: 83.2 bits (204), Expect = 6.650e-19
Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   16 SAEFVMEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLTVTFLSCLICGNWICQMLAGFAVRVFSEI 264
            S+EFV+  + QA+Y +L++S P+L+ ALG+GL++S+ QATTQIQEQTL+FVPK+   F+  +  G W+   +  F  ++FS +
Sbjct:    2 SSEFVISTAEQAIYTVLMISGPLLLLALGIGLLVSIFQATTQIQEQTLAFVPKIVAVFVGIIFFGPWMLSRMISFTYQIFSNL 84          
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Match: UPI000AAFD34C (Flagellar biosynthesis protein FliQ n=1 Tax=Olavius algarvensis Gamma 3 endosymbiont TaxID=260704 RepID=UPI000AAFD34C)

HSP 1 Score: 82.8 bits (203), Expect = 9.430e-19
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   22 EFVMEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLTVTFLSCLICGNWICQMLAGFAVRVFSEI 264
            + V+++S QALYLI +++APML++ALG+GL+I + QA T I EQTLSF+PKL +  LS LI G W+  +L GF  R++  I
Sbjct:    4 DMVIDLSQQALYLIAMIAAPMLLSALGIGLLIGMFQAATSINEQTLSFIPKLMILLLSILIAGPWMLNLLLGFTRRLYLGI 84          
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Match: UPI001922DAAB (flagellar biosynthesis protein FliQ n=1 Tax=Bacillus sp. YIM B00319 TaxID=2803787 RepID=UPI001922DAAB)

HSP 1 Score: 82.8 bits (203), Expect = 9.430e-19
Identity = 41/85 (48.24%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   16 SAEFVMEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLTVTFLSCLICGNWICQMLAGFAVRVFSEIGH 270
            SA+ V++++ QA++ ILL+SAP+L+ ALGVGLV+S+ QATTQIQEQTL+FVPK+    +S ++ G W+  ++  F   ++ +I H
Sbjct:    2 SADTVIKLAEQAVFTILLVSAPLLLMALGVGLVVSIFQATTQIQEQTLAFVPKIIAVLVSLVVFGPWMLSVILDFTQSLYQDIHH 86          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17435.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XMY9_9BURK9.100e-3566.67Flagellar biosynthetic protein FliQ n=1 Tax=Burkho... [more]
A0A355TRV8_9BACT1.370e-2954.84Flagellar biosynthetic protein FliQ n=1 Tax=bacter... [more]
A0A7Z9PW11_9BACT1.900e-2461.45Flagellar biosynthetic protein FliQ n=1 Tax=Phycis... [more]
A0A7C6DQJ3_9BACT5.590e-2055.81Flagellar biosynthetic protein FliQ n=1 Tax=bacter... [more]
A0A1A5YN07_9BACL8.150e-2055.42Flagellar biosynthetic protein FliQ n=1 Tax=Paenib... [more]
A0A7X7S870_9FIRM1.640e-1951.16Flagellar biosynthetic protein FliQ n=1 Tax=Syntro... [more]
A0A7C6UP16_9FIRM6.650e-1950.00Flagellar biosynthetic protein FliQ n=1 Tax=Clostr... [more]
UPI001951A22B6.650e-1945.78flagellar biosynthesis protein FliQ n=1 Tax=Bacill... [more]
UPI000AAFD34C9.430e-1951.85Flagellar biosynthesis protein FliQ n=1 Tax=Olaviu... [more]
UPI001922DAAB9.430e-1948.24flagellar biosynthesis protein FliQ n=1 Tax=Bacill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17435contigP-wetherbeei_contig17435:1088..1381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog592026.GCWU0000282_002771
Preferred namefliQ
PFAMsBac_export_3
Model size294
Max annot lvl186801|Clostridia
KEGG koko:K02420
KEGG TC3.A.6.2
KEGG Pathwayko02040,map02040
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.41e-17
EggNOG OGsCOG1987@1|root,COG1987@2|Bacteria,1VEHF@1239|Firmicutes,24QJR@186801|Clostridia
DescriptionFlagellar biosynthetic protein FliQ
Cds size264
COG categoryN
BRITEko00000,ko00001,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186117.513985-CDS-P-wetherbeei_contig17435:1087..13511683186117.513985-CDS-P-wetherbeei_contig17435:1087..1351Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17435 1088..1351 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186117.5242395-UTR-P-wetherbeei_contig17435:1351..13811683186117.5242395-UTR-P-wetherbeei_contig17435:1351..1381Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17435 1352..1381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17435.2.1prot_P-wetherbeei_contig17435.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17435 1088..1351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17435.2.1

>prot_P-wetherbeei_contig17435.2.1 ID=prot_P-wetherbeei_contig17435.2.1|Name=mRNA_P-wetherbeei_contig17435.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MEISTQALYLILLLSAPMLMAALGVGLVISVLQATTQIQEQTLSFVPKLT
VTFLSCLICGNWICQMLAGFAVRVFSEIGHMGPHGSM*
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mRNA from alignment at P-wetherbeei_contig17435:1088..1381-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17435.2.1 ID=mRNA_P-wetherbeei_contig17435.2.1|Name=mRNA_P-wetherbeei_contig17435.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig17435:1088..1381- (Phaeothamnion wetherbeei SAG_119_79)
GGAGAAGAGTATTTCAGCGCAGAGTTCGTTATGGAGATCAGCACGCAGGC TCTCTACCTCATTTTGCTGCTCTCCGCCCCGATGCTGATGGCCGCTCTCG GCGTCGGTCTCGTCATCAGCGTGCTCCAGGCTACCACCCAGATTCAAGAG CAGACGCTCTCTTTCGTGCCCAAACTGACCGTCACGTTCCTTTCGTGCCT GATTTGCGGCAACTGGATTTGTCAGATGCTGGCTGGCTTTGCGGTGCGTG TGTTTAGCGAGATAGGCCACATGGGTCCCCATGGGAGCATGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17435:1088..1381-

>mRNA_P-wetherbeei_contig17435.2.1 ID=mRNA_P-wetherbeei_contig17435.2.1|Name=mRNA_P-wetherbeei_contig17435.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig17435:1088..1381- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGATCAGCACGCAGGCTCTCTACCTCATTTTGCTGCTCTCCGCCCC
GATGCTGATGGCCGCTCTCGGCGTCGGTCTCGTCATCAGCGTGCTCCAGG
CTACCACCCAGATTCAAGAGCAGACGCTCTCTTTCGTGCCCAAACTGACC
GTCACGTTCCTTTCGTGCCTGATTTGCGGCAACTGGATTTGTCAGATGCT
GGCTGGCTTTGCGGTGCGTGTGTTTAGCGAGATAGGCCACATGGGTCCCC
ATGGGAGCATGTAG
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