mRNA_P-wetherbeei_contig17418.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17418.1.1
Unique NamemRNA_P-wetherbeei_contig17418.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17418.1.1 vs. uniprot
Match: D7G470_ECTSI (HDAC_interact domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G470_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.200e-13
Identity = 66/207 (31.88%), Postives = 100/207 (48.31%), Query Frame = 1 
Query:   67 AGGGKLPRWQSLMFCTQDMYVLLRLHHVLVERLAAATRLCAAA--------ADTSQPTAASEAFTMNGVSASSANTKRAGXXXXXXXXXXXXGEEGTAAARMEALLALTYAWAEGGLSPDRFDEGCRQLVGSGGYILSTLDKILKHFLKYASRVGGDGVAQKLQRLFLHEAALAALSGGGFDVAGYRDRVRWMMRRRRRDELVRVQY 663
            A    LP+ Q +MF T D Y++LR+HH+L ERLA A +LC+ A        A   +   AS   T  G+ A++ + +  G                      +  L   Y   E  ++ +R++EG RQLVG+ GY+L +LDK++   L+   R   D V  KL +L+ +E         G   A YR  V+ ++ R  + E+VRVQY
Sbjct:  986 ASSNPLPQGQEVMFTTTDFYLVLRMHHLLAERLAEAKKLCSEAGLSRQTVVASPQEVLRASAGVTGTGMHAANGDKEEIGY---------------------KTFLGHLYDLLEEKINTERYEEGVRQLVGNQGYVLCSLDKLVVGLLQNLYRASADKVFHKLTQLYYYERTTQT---EGVVPAIYRGHVQELLSRSEK-EVVRVQY 1167
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BLAST of mRNA_P-wetherbeei_contig17418.1.1 vs. uniprot
Match: A0A6H5KFU2_9PHAE (Sin3a_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.350e-7
Identity = 51/180 (28.33%), Postives = 79/180 (43.89%), Query Frame = 1 
Query:   64 AAGGGKLPRWQSLMFCTQDMYVLLRLHHVLVERLAAATRLCAAAADTSQPTAASEAFTMNGVSASSANTKR----------AGXXXXXXXXXXXXGEEGTAAARM--EALLALTYAWAEGGLSPDRFDEGCRQLVGSGGYILSTLDKILKHFLKYASRVGGDGVAQKLQRLFLHEAALAA 567
            A  G  LP  + ++ CTQ++YVL+R+HHVL +RL  A +L   A D     A  +    N +   S  T             G              +G           LAL YA+ +   S  + ++  +  VG+  Y+L + DK++  FL+    V  D  + K+ +LF H+AAL A
Sbjct:  497 AEAGPVLPESERVLLCTQELYVLMRIHHVLCDRLGKAVKL---AEDAKALKAGQKDHPQNPIIRESCETDEEKLMRSLGLGGGDSPLAFSLAPPPSSDGKGGGLRGYSGFLALLYAFTDQSNSELKLEDAVQLTVGNEAYMLFSYDKVINAFLRQLKLVVDDDSSLKMLQLFEHQAALGA 673
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BLAST of mRNA_P-wetherbeei_contig17418.1.1 vs. uniprot
Match: D7G0X2_ECTSI (HDAC_interact domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 6.360e-7
Identity = 54/180 (30.00%), Postives = 81/180 (45.00%), Query Frame = 1 
Query:   64 AAGGGKLPRWQSLMFCTQDMYVLLRLHHVLVERLAAATRLCAAAADTSQPTAASEAFTMNGVSASSANTKR----------AGXXXXXXXXXXXXGEEGTAAARM--EALLALTYAWAEGGLSPDRFDEGCRQLVGSGGYILSTLDKILKHFLKYASRVGGDGVAQKLQRLFLHEAALAA 567
            A  G  LP  + ++ CTQ++YVL+R+HHVL +RL  A +L   A D     A  +    N +   S  T             G         XXX   G           LAL YA+ +   S  + ++  +  VG+  Y+L + DK++  FL+    V  D  + K+ +LF H+AAL A
Sbjct:  901 AGAGPVLPESERVLLCTQELYVLMRIHHVLCDRLGKAVKL---AEDAKALKAGQKDHPQNPIIRESCETDEEKVMRSLGLGVGGSPPASSGAXXXSSHGKGGGLRGYSGFLALLYAFTDQSNSELKLEDAVQLTVGNEAYMLFSYDKVINAFLRQLKLVVDDDSSLKMLQLFEHQAALGA 1077
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17418.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G470_ECTSI2.200e-1331.88HDAC_interact domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KFU2_9PHAE4.350e-728.33Sin3a_C domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0X2_ECTSI6.360e-730.00HDAC_interact domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17418contigP-wetherbeei_contig17418:10..1409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G470
PFAMsPAH,Sin3_corepress,Sin3a_C
Model size1402
Max annot lvl2759|Eukaryota
KEGG koko:K11644
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.61e-14
EggNOG OGsCOG5602@1|root,KOG4204@2759|Eukaryota
Descriptionhistone deacetylation
Cds size1398
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.9357271-CDS-P-wetherbeei_contig17418:11..14091683186116.9357271-CDS-P-wetherbeei_contig17418:11..1409Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17418 12..1409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17418.1.1prot_P-wetherbeei_contig17418.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17418 12..1409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17418.1.1

>prot_P-wetherbeei_contig17418.1.1 ID=prot_P-wetherbeei_contig17418.1.1|Name=mRNA_P-wetherbeei_contig17418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=466bp
SAPAAGAAPSAAAAPSSGFAAAAGGGKLPRWQSLMFCTQDMYVLLRLHHV
LVERLAAATRLCAAAADTSQPTAASEAFTMNGVSASSANTKRAGAAAAAT
AGAATTGEEGTAAARMEALLALTYAWAEGGLSPDRFDEGCRQLVGSGGYI
LSTLDKILKHFLKYASRVGGDGVAQKLQRLFLHEAALAALSGGGFDVAGY
RDRVRWMMRRRRRDELVRVQYCANGSGAVEAADGLTEAAADGDGPAASAA
AAADGVSAMDMDGVSAMGVTEDGGGKEAVAPVLLYEWVGDVGAAIGDDDD
ETNRRIEAVTIEQMASVLGIVAEATAEDGGAAVAAAGSAAGDESGGGDAD
GGGGLAVDGGEKGGASGDAVDDMVADPEDETESGGGSGGNGVGGRGGGKG
RHSKRGGRGRGASGRASPGAASIDAGGSDGEGMADAQPQAAAAAAGDGKK
GGGDSAPGEYGGEQDG
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mRNA from alignment at P-wetherbeei_contig17418:10..1409-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17418.1.1 ID=mRNA_P-wetherbeei_contig17418.1.1|Name=mRNA_P-wetherbeei_contig17418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1400bp|location=Sequence derived from alignment at P-wetherbeei_contig17418:10..1409- (Phaeothamnion wetherbeei SAG_119_79)
TCCGCCCCGGCTGCCGGAGCGGCGCCTTCGGCGGCGGCGGCACCCTCCAG
CGGATTCGCCGCGGCGGCCGGCGGCGGCAAGCTGCCGCGGTGGCAGTCGC
TGATGTTCTGCACGCAGGACATGTACGTCCTGCTGCGCCTCCACCACGTC
CTCGTCGAGCGCCTCGCCGCGGCGACCCGCCTCTGCGCCGCCGCCGCCGA
CACCTCACAGCCGACCGCCGCCTCTGAAGCCTTCACCATGAACGGTGTGT
CCGCCTCCAGTGCTAACACAAAGCGGGCCGGCGCCGCGGCGGCAGCAACG
GCGGGCGCAGCGACCACGGGCGAGGAGGGGACGGCCGCGGCGCGCATGGA
GGCGCTGCTGGCGCTGACGTATGCGTGGGCGGAGGGCGGGCTGAGCCCGG
ACCGTTTTGACGAGGGTTGCCGCCAGCTGGTGGGCAGCGGCGGCTACATC
CTGAGCACCCTTGACAAGATCCTAAAGCATTTCTTGAAGTACGCGTCGCG
CGTCGGCGGCGACGGCGTCGCACAGAAGCTGCAGCGGCTCTTTTTGCACG
AGGCAGCGTTGGCGGCGCTCAGCGGCGGCGGCTTCGACGTCGCCGGCTAC
CGCGACCGCGTCCGCTGGATGATGCGCCGCCGCCGCCGCGACGAGCTGGT
GCGCGTTCAGTATTGCGCTAACGGCAGTGGCGCGGTGGAGGCGGCCGACG
GGCTGACGGAAGCAGCGGCTGACGGCGATGGCCCAGCAGCTTCGGCGGCG
GCGGCGGCGGACGGCGTCAGCGCGATGGACATGGACGGCGTCTCGGCGAT
GGGAGTGACAGAGGACGGCGGTGGCAAGGAGGCGGTGGCGCCAGTGCTGC
TGTACGAGTGGGTGGGGGACGTCGGCGCCGCAATCGGCGACGATGACGAC
GAGACGAATCGCCGCATCGAGGCCGTGACCATCGAGCAGATGGCGAGCGT
CCTCGGCATTGTGGCCGAGGCGACCGCGGAAGACGGCGGCGCCGCCGTCG
CTGCTGCTGGCAGCGCCGCCGGCGACGAAAGCGGCGGTGGGGATGCTGAC
GGCGGCGGTGGCTTGGCCGTGGACGGTGGCGAGAAGGGCGGCGCCAGCGG
CGACGCCGTGGACGACATGGTTGCCGATCCCGAGGATGAGACAGAGTCGG
GAGGTGGCAGCGGTGGGAATGGCGTTGGCGGCAGGGGCGGCGGCAAGGGT
CGCCACAGCAAGCGCGGCGGGCGGGGCCGCGGCGCCAGCGGCCGCGCCTC
GCCCGGTGCCGCGAGCATCGACGCCGGCGGCTCCGATGGAGAAGGGATGG
CCGACGCGCAACCGCAGGCGGCAGCGGCCGCGGCTGGCGATGGCAAGAAG
GGCGGCGGCGATTCGGCGCCGGGAGAGTACGGGGGGGAGCAGGATGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17418:10..1409-

>mRNA_P-wetherbeei_contig17418.1.1 ID=mRNA_P-wetherbeei_contig17418.1.1|Name=mRNA_P-wetherbeei_contig17418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1398bp|location=Sequence derived from alignment at P-wetherbeei_contig17418:10..1409- (Phaeothamnion wetherbeei SAG_119_79)
TCCGCCCCGGCTGCCGGAGCGGCGCCTTCGGCGGCGGCGGCACCCTCCAG
CGGATTCGCCGCGGCGGCCGGCGGCGGCAAGCTGCCGCGGTGGCAGTCGC
TGATGTTCTGCACGCAGGACATGTACGTCCTGCTGCGCCTCCACCACGTC
CTCGTCGAGCGCCTCGCCGCGGCGACCCGCCTCTGCGCCGCCGCCGCCGA
CACCTCACAGCCGACCGCCGCCTCTGAAGCCTTCACCATGAACGGTGTGT
CCGCCTCCAGTGCTAACACAAAGCGGGCCGGCGCCGCGGCGGCAGCAACG
GCGGGCGCAGCGACCACGGGCGAGGAGGGGACGGCCGCGGCGCGCATGGA
GGCGCTGCTGGCGCTGACGTATGCGTGGGCGGAGGGCGGGCTGAGCCCGG
ACCGTTTTGACGAGGGTTGCCGCCAGCTGGTGGGCAGCGGCGGCTACATC
CTGAGCACCCTTGACAAGATCCTAAAGCATTTCTTGAAGTACGCGTCGCG
CGTCGGCGGCGACGGCGTCGCACAGAAGCTGCAGCGGCTCTTTTTGCACG
AGGCAGCGTTGGCGGCGCTCAGCGGCGGCGGCTTCGACGTCGCCGGCTAC
CGCGACCGCGTCCGCTGGATGATGCGCCGCCGCCGCCGCGACGAGCTGGT
GCGCGTTCAGTATTGCGCTAACGGCAGTGGCGCGGTGGAGGCGGCCGACG
GGCTGACGGAAGCAGCGGCTGACGGCGATGGCCCAGCAGCTTCGGCGGCG
GCGGCGGCGGACGGCGTCAGCGCGATGGACATGGACGGCGTCTCGGCGAT
GGGAGTGACAGAGGACGGCGGTGGCAAGGAGGCGGTGGCGCCAGTGCTGC
TGTACGAGTGGGTGGGGGACGTCGGCGCCGCAATCGGCGACGATGACGAC
GAGACGAATCGCCGCATCGAGGCCGTGACCATCGAGCAGATGGCGAGCGT
CCTCGGCATTGTGGCCGAGGCGACCGCGGAAGACGGCGGCGCCGCCGTCG
CTGCTGCTGGCAGCGCCGCCGGCGACGAAAGCGGCGGTGGGGATGCTGAC
GGCGGCGGTGGCTTGGCCGTGGACGGTGGCGAGAAGGGCGGCGCCAGCGG
CGACGCCGTGGACGACATGGTTGCCGATCCCGAGGATGAGACAGAGTCGG
GAGGTGGCAGCGGTGGGAATGGCGTTGGCGGCAGGGGCGGCGGCAAGGGT
CGCCACAGCAAGCGCGGCGGGCGGGGCCGCGGCGCCAGCGGCCGCGCCTC
GCCCGGTGCCGCGAGCATCGACGCCGGCGGCTCCGATGGAGAAGGGATGG
CCGACGCGCAACCGCAGGCGGCAGCGGCCGCGGCTGGCGATGGCAAGAAG
GGCGGCGGCGATTCGGCGCCGGGAGAGTACGGGGGGGAGCAGGATGGC
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