mRNA_P-wetherbeei_contig1741.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1741.1.1
Unique NamemRNA_P-wetherbeei_contig1741.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1741.1.1 vs. uniprot
Match: A0A7S2DFF0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFF0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.090e-6
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 2 
Query:  737 GSDQLSFPSFFGADKPLQHVDVRLLARVAEEAGADLRVLLLHRDAGDALRSTVR-RGFGTPMHQARVLLINARALHAML 970
            GS  LS+P+F G DK L   ++  LA +AEEAG DLR+L+L R A + + ST + R F +   +  VL  NA  L A L
Sbjct:   28 GSGMLSYPNFGGYDKALHRPNIHQLAMLAEEAGVDLRILVLQRPAHELMVSTTKHRKFNSKPTEMAVLGDNAAGLAAQL 106
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BLAST of mRNA_P-wetherbeei_contig1741.1.1 vs. uniprot
Match: A0A7S2GH68_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GH68_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.810e-6
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 2 
Query:  737 GSDQLSFPSFFGADKPLQHVDVRLLARVAEEAGADLRVLLLHRDAGDALRSTVR-RGFGTPMHQARVLLINARALHAML 970
            GS  LS+P+F G DK L   ++  LA +AEEAG DLR+L+L R A + + ST + R F +   +  VL  NA  L A L
Sbjct:   28 GSGMLSYPNFGGYDKALHRPNIHQLAMLAEEAGVDLRILVLQRPAHELMVSTTKHRKFNSKPTEMAVLGDNAAGLAAQL 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1741.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2DFF0_9STRA1.090e-644.30Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2GH68_9STRA3.810e-644.30Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1741contigP-wetherbeei_contig1741:4447..5764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size972
Hectar predicted targeting categorysignal peptide
Exons3
Cds size960
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.766663-UTR-P-wetherbeei_contig1741:4446..44561683186116.766663-UTR-P-wetherbeei_contig1741:4446..4456Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1741 4447..4456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.775948-CDS-P-wetherbeei_contig1741:4456..46701683186116.775948-CDS-P-wetherbeei_contig1741:4456..4670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1741 4457..4670 +
1683186116.7868538-CDS-P-wetherbeei_contig1741:4806..55071683186116.7868538-CDS-P-wetherbeei_contig1741:4806..5507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1741 4807..5507 +
1683186116.7975903-CDS-P-wetherbeei_contig1741:5719..57641683186116.7975903-CDS-P-wetherbeei_contig1741:5719..5764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1741 5720..5764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1741.1.1prot_P-wetherbeei_contig1741.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1741 4457..5764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1741.1.1

>prot_P-wetherbeei_contig1741.1.1 ID=prot_P-wetherbeei_contig1741.1.1|Name=mRNA_P-wetherbeei_contig1741.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
MAARASTTSYTCVLFVGLLSCGILSMKDRSEEVHMGRRRLQRNGSEERQP
WFVRKTVFSDDVRIGFLAGIEGTGHHMWDQIFTRAKRDGIVTTNCTLTAT
WFKFESDVTRKNPSTQREDSGALATTVSPERYDMARLLATELMRELGGSP
PGPDSATVKVAPGAAEATQVSPMVAPKIVAATERAKNSNGGGCGSESDGD
GARCGSGNGGGGGGGGSSSGGNGPAAGRQPSLVAINPNHLCKGSDQLSFP
SFFGADKPLQHVDVRLLARVAEEAGADLRVLLLHRDAGDALRSTVRRGFG
TPMHQARVLLINARALHAML
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mRNA from alignment at P-wetherbeei_contig1741:4447..5764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1741.1.1 ID=mRNA_P-wetherbeei_contig1741.1.1|Name=mRNA_P-wetherbeei_contig1741.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1318bp|location=Sequence derived from alignment at P-wetherbeei_contig1741:4447..5764+ (Phaeothamnion wetherbeei SAG_119_79)
GGGAGGGATCATGGCGGCGAGAGCCAGTACCACGTCTTACACATGCGTCC
TCTTCGTTGGGCTTCTGTCATGTGGAATTCTTTCGATGAAAGATCGATCA
GAAGAAGTTCATATGGGACGGCGAAGGCTACAGCGCAACGGCTCAGAGGA
GCGACAACCGTGGTTTGTGCGCAAGACTGTATTCAGTGATGACGTGCGCA
TTGGCTTCCTCGCGGGAATCGAAGGTTCGTGTCGGATCGCTGTGAAGGGG
ATGTGTCCATGTCTGTGTGTGTCTCGGTTTCCCTCCCATCTTCTTTCCTC
CATTTGAGAACCAACGGTCACTTCACTTTTACCATCTCTGCTGTAATTCT
TCAACAACAGGAACGGGGCATCACATGTGGGACCAAATTTTCACAAGAGC
GAAACGTGACGGCATTGTTACAACGAATTGCACTCTTACGGCGACGTGGT
TTAAATTCGAGAGCGACGTTACGAGGAAGAATCCATCTACGCAGAGGGAG
GATTCGGGCGCGCTGGCCACCACTGTTTCGCCGGAGCGGTACGATATGGC
CAGGCTCTTGGCCACCGAACTGATGAGGGAGCTGGGCGGCAGCCCGCCGG
GCCCCGATTCGGCGACCGTTAAAGTGGCGCCGGGCGCGGCGGAGGCGACA
CAAGTCTCACCGATGGTAGCTCCAAAAATCGTTGCCGCGACCGAACGAGC
CAAGAACTCCAACGGCGGCGGCTGCGGTAGCGAAAGTGATGGGGACGGCG
CCCGCTGCGGCAGCGGCAACGGCGGCGGTGGCGGCGGCGGCGGCAGCAGC
AGCGGCGGCAACGGGCCGGCGGCGGGCCGGCAGCCGTCCCTTGTGGCCAT
CAACCCCAACCACTTGTGCAAGGGCAGCGACCAGCTGTCCTTCCCGTCCT
TCTTTGGCGCCGACAAGCCGCTGCAGCATGTTGACGTCCGGCTGTTGGCG
CGCGTCGCTGAGGAAGCCGGCGCCGACCTCCGCGTGCTGCTCCTCCACCG
CGACGCGGGAGACGCGCTCCGCTCCACCGTGCGGCGCGGCTTTGGGACGC
CCATGCACCAGGTGAATATCCAACTTTTCCTCGCAAAGATGTTTTGTCTC
GTCGAAGAACCACCGTGCTGCAGTTTGGCCACTTGTCACTTTTAGTGTGA
ACAGCATCATTCACCGACAAACTAGATTCAATTGACATCTCTGAAGAACC
TCCGAGATATTGGAAGAGCCAGTAAGTGCTGACAGATCATGCCGTTGCCT
GCAATTTCGCGCTCGTCTGGCAGGCCCGAGTCCTGCTCATCAACGCGCGG
GCGCTCCATGCCATGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1741:4447..5764+

>mRNA_P-wetherbeei_contig1741.1.1 ID=mRNA_P-wetherbeei_contig1741.1.1|Name=mRNA_P-wetherbeei_contig1741.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig1741:4447..5764+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGAGAGCCAGTACCACGTCTTACACATGCGTCCTCTTCGTTGG
GCTTCTGTCATGTGGAATTCTTTCGATGAAAGATCGATCAGAAGAAGTTC
ATATGGGACGGCGAAGGCTACAGCGCAACGGCTCAGAGGAGCGACAACCG
TGGTTTGTGCGCAAGACTGTATTCAGTGATGACGTGCGCATTGGCTTCCT
CGCGGGAATCGAAGGAACGGGGCATCACATGTGGGACCAAATTTTCACAA
GAGCGAAACGTGACGGCATTGTTACAACGAATTGCACTCTTACGGCGACG
TGGTTTAAATTCGAGAGCGACGTTACGAGGAAGAATCCATCTACGCAGAG
GGAGGATTCGGGCGCGCTGGCCACCACTGTTTCGCCGGAGCGGTACGATA
TGGCCAGGCTCTTGGCCACCGAACTGATGAGGGAGCTGGGCGGCAGCCCG
CCGGGCCCCGATTCGGCGACCGTTAAAGTGGCGCCGGGCGCGGCGGAGGC
GACACAAGTCTCACCGATGGTAGCTCCAAAAATCGTTGCCGCGACCGAAC
GAGCCAAGAACTCCAACGGCGGCGGCTGCGGTAGCGAAAGTGATGGGGAC
GGCGCCCGCTGCGGCAGCGGCAACGGCGGCGGTGGCGGCGGCGGCGGCAG
CAGCAGCGGCGGCAACGGGCCGGCGGCGGGCCGGCAGCCGTCCCTTGTGG
CCATCAACCCCAACCACTTGTGCAAGGGCAGCGACCAGCTGTCCTTCCCG
TCCTTCTTTGGCGCCGACAAGCCGCTGCAGCATGTTGACGTCCGGCTGTT
GGCGCGCGTCGCTGAGGAAGCCGGCGCCGACCTCCGCGTGCTGCTCCTCC
ACCGCGACGCGGGAGACGCGCTCCGCTCCACCGTGCGGCGCGGCTTTGGG
ACGCCCATGCACCAGGCCCGAGTCCTGCTCATCAACGCGCGGGCGCTCCA
TGCCATGCTG
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