mRNA_P-wetherbeei_contig17400.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17400.1.1
Unique NamemRNA_P-wetherbeei_contig17400.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17400.1.1 vs. uniprot
Match: UPI001FA743AD (hypothetical protein n=1 Tax=Lysobacter sp. CFH 32150 TaxID=2927128 RepID=UPI001FA743AD)

HSP 1 Score: 243 bits (621), Expect = 1.480e-73
Identity = 151/407 (37.10%), Postives = 205/407 (50.37%), Query Frame = 1 
Query:   10 LLVAALV---AGCKNQPIADGVVELRREELAVSMLVINLRDAYNEPNLPAPAGIAWRERFARVAQWIALNEQ-PDALVIQEMPGYWC----GDRIRDYEAAHYLIDQIRQRRQVEYRIAYLLSHKQAGGYGDWWVGNEKLGACSTRGGRALLYRPDRLRNTQRDAGFDFTNGSN-----AGSALMNSLPCCDPRPGTESVCALTDGPMTRASSCQHD-------TPAGAAWTRRQSVPDGP------TDAVFSRLELKNQPGNFVHIYNVHLSWNNGGTT-----------LAEASINGLVTDMEQRFAPAGRPLYPPIVTGDFNLGRQAISDRLP---GAFSRFSTLHWTPELMGVLIGNDDAFSAKQKVIARGVRELPDFGCMANPVAGEPAITSDPLTLWSDHC 1110
            L++A+L+    GC +  + D    L RE+  +S+L +NL DA N P   +  G+ W+ R+ R++ W+      PD +V+QE PGYW     G ++ DY A  +L+D IR     +YR+AYL+     G +G  W+G   +G CST+G RALLYRP RLRN     G   T  S        + L  SL CC P      VC++ DGP++   + +++       TP GAA+ R +    G       TDAVF+R EL NQPGNFVHIYNVH  WN                    +IN LVTDME RF   G  LYPPI+ GDFN+G  A  +  P     F RF    +   + GV+ G    F +K+   A  ++ +P   C             DP TLWSDHC
Sbjct:   18 LILASLLLSLTGCPDPVVRDSAAALDREQFGISVLSVNLLDALNTPRASS-TGVPWQTRYTRISDWMTQTGNFPDVIVLQEAPGYWSCAGNGRQLPDYAAIDFLLDGIRMASGEQYRVAYLIGGTPHGSHGSDWMGTASVGGCSTQGERALLYRPSRLRNVITSPGSGDTVVSAYQIPLQSTYLARSLQCCHPAADRTDVCSVIDGPLSTPMAGEYEGAIGTCATPLGAAFARSRLATQGENRQRPTTDAVFTRFELVNQPGNFVHIYNVHRGWNQDWEDRHHTPAPQVEDFGSQNINALVTDMEGRFR-RGDVLYPPILVGDFNVGLPAPGETFPLLTSYFPRFDIGDFF-RIDGVMFGKAADFPSKRPAYANLMQHMPSDNC------------EDPATLWSDHC 409
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17400.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001FA743AD1.480e-7337.10hypothetical protein n=1 Tax=Lysobacter sp. CFH 32... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17400contigP-wetherbeei_contig17400:14..1126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1113
Hectar predicted targeting categoryother localisation
Exons1
Cds size1113
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.602731-CDS-P-wetherbeei_contig17400:13..11261683186116.602731-CDS-P-wetherbeei_contig17400:13..1126Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17400 14..1126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17400.1.1prot_P-wetherbeei_contig17400.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17400 14..1126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17400.1.1

>prot_P-wetherbeei_contig17400.1.1 ID=prot_P-wetherbeei_contig17400.1.1|Name=mRNA_P-wetherbeei_contig17400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=371bp
MTLLLVAALVAGCKNQPIADGVVELRREELAVSMLVINLRDAYNEPNLPA
PAGIAWRERFARVAQWIALNEQPDALVIQEMPGYWCGDRIRDYEAAHYLI
DQIRQRRQVEYRIAYLLSHKQAGGYGDWWVGNEKLGACSTRGGRALLYRP
DRLRNTQRDAGFDFTNGSNAGSALMNSLPCCDPRPGTESVCALTDGPMTR
ASSCQHDTPAGAAWTRRQSVPDGPTDAVFSRLELKNQPGNFVHIYNVHLS
WNNGGTTLAEASINGLVTDMEQRFAPAGRPLYPPIVTGDFNLGRQAISDR
LPGAFSRFSTLHWTPELMGVLIGNDDAFSAKQKVIARGVRELPDFGCMAN
PVAGEPAITSDPLTLWSDHCA
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mRNA from alignment at P-wetherbeei_contig17400:14..1126-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17400.1.1 ID=mRNA_P-wetherbeei_contig17400.1.1|Name=mRNA_P-wetherbeei_contig17400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1113bp|location=Sequence derived from alignment at P-wetherbeei_contig17400:14..1126- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTTGCTGCTCGTTGCCGCTCTTGTCGCGGGCTGCAAGAACCAGCC
CATCGCCGACGGCGTCGTGGAATTGCGCCGCGAGGAGCTGGCGGTCTCGA
TGCTGGTCATCAACCTGCGCGACGCGTACAACGAGCCGAACTTGCCCGCA
CCGGCCGGCATCGCGTGGCGGGAGCGGTTCGCGCGCGTCGCGCAGTGGAT
CGCGCTCAACGAGCAGCCCGACGCGCTGGTGATCCAGGAGATGCCGGGTT
ACTGGTGCGGCGATCGCATCCGCGACTACGAGGCGGCGCATTACCTGATC
GACCAGATCCGCCAGCGCCGGCAGGTGGAATACCGGATCGCCTACCTGCT
CAGCCACAAGCAGGCCGGCGGGTACGGCGACTGGTGGGTCGGTAACGAGA
AACTGGGCGCCTGCTCCACGCGCGGCGGACGCGCGCTGCTATATCGCCCC
GACCGCCTGCGCAACACGCAGCGCGACGCGGGCTTCGATTTCACGAACGG
CAGCAATGCCGGCTCCGCGCTGATGAACAGCCTGCCTTGCTGCGATCCTC
GCCCAGGCACGGAGTCGGTGTGCGCATTGACCGACGGACCGATGACGCGC
GCCAGCAGTTGCCAGCACGACACGCCGGCGGGGGCGGCATGGACGCGCCG
CCAGAGCGTGCCAGACGGTCCGACCGACGCGGTGTTCAGCCGGCTGGAAC
TGAAGAACCAGCCCGGCAACTTCGTGCACATCTACAACGTGCACCTGAGC
TGGAACAATGGCGGAACGACGCTCGCCGAAGCCTCGATCAACGGACTGGT
CACGGACATGGAGCAGCGTTTCGCGCCGGCCGGCCGCCCGCTGTATCCAC
CGATCGTGACCGGTGACTTCAACCTCGGCCGGCAGGCGATCAGCGACCGC
CTGCCGGGCGCATTCTCGAGATTCTCGACCCTGCACTGGACGCCTGAGCT
CATGGGGGTGCTGATCGGCAACGACGATGCATTTTCGGCGAAGCAGAAAG
TCATCGCACGAGGCGTGCGCGAATTGCCGGACTTCGGGTGCATGGCCAAT
CCGGTTGCGGGTGAACCGGCGATCACGTCGGACCCGCTGACGCTGTGGTC
GGATCACTGCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17400:14..1126-

>mRNA_P-wetherbeei_contig17400.1.1 ID=mRNA_P-wetherbeei_contig17400.1.1|Name=mRNA_P-wetherbeei_contig17400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1113bp|location=Sequence derived from alignment at P-wetherbeei_contig17400:14..1126- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTTGCTGCTCGTTGCCGCTCTTGTCGCGGGCTGCAAGAACCAGCC
CATCGCCGACGGCGTCGTGGAATTGCGCCGCGAGGAGCTGGCGGTCTCGA
TGCTGGTCATCAACCTGCGCGACGCGTACAACGAGCCGAACTTGCCCGCA
CCGGCCGGCATCGCGTGGCGGGAGCGGTTCGCGCGCGTCGCGCAGTGGAT
CGCGCTCAACGAGCAGCCCGACGCGCTGGTGATCCAGGAGATGCCGGGTT
ACTGGTGCGGCGATCGCATCCGCGACTACGAGGCGGCGCATTACCTGATC
GACCAGATCCGCCAGCGCCGGCAGGTGGAATACCGGATCGCCTACCTGCT
CAGCCACAAGCAGGCCGGCGGGTACGGCGACTGGTGGGTCGGTAACGAGA
AACTGGGCGCCTGCTCCACGCGCGGCGGACGCGCGCTGCTATATCGCCCC
GACCGCCTGCGCAACACGCAGCGCGACGCGGGCTTCGATTTCACGAACGG
CAGCAATGCCGGCTCCGCGCTGATGAACAGCCTGCCTTGCTGCGATCCTC
GCCCAGGCACGGAGTCGGTGTGCGCATTGACCGACGGACCGATGACGCGC
GCCAGCAGTTGCCAGCACGACACGCCGGCGGGGGCGGCATGGACGCGCCG
CCAGAGCGTGCCAGACGGTCCGACCGACGCGGTGTTCAGCCGGCTGGAAC
TGAAGAACCAGCCCGGCAACTTCGTGCACATCTACAACGTGCACCTGAGC
TGGAACAATGGCGGAACGACGCTCGCCGAAGCCTCGATCAACGGACTGGT
CACGGACATGGAGCAGCGTTTCGCGCCGGCCGGCCGCCCGCTGTATCCAC
CGATCGTGACCGGTGACTTCAACCTCGGCCGGCAGGCGATCAGCGACCGC
CTGCCGGGCGCATTCTCGAGATTCTCGACCCTGCACTGGACGCCTGAGCT
CATGGGGGTGCTGATCGGCAACGACGATGCATTTTCGGCGAAGCAGAAAG
TCATCGCACGAGGCGTGCGCGAATTGCCGGACTTCGGGTGCATGGCCAAT
CCGGTTGCGGGTGAACCGGCGATCACGTCGGACCCGCTGACGCTGTGGTC
GGATCACTGCGCG
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