mRNA_P-wetherbeei_contig17344.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17344.1.1
Unique NamemRNA_P-wetherbeei_contig17344.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Match: A0A127EWZ2_9HYPH (ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EWZ2_9HYPH)

HSP 1 Score: 243 bits (621), Expect = 2.660e-74
Identity = 147/355 (41.41%), Postives = 190/355 (53.52%), Query Frame = 1
Query:    7 KDPEIPAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGVFSVLQKNKHHVSNLYGAAMPFMQRLTWSGTALHTGPLPGYPASHGCVRMTNDFAQMLWGQTRIGARVIVTREETAPFEIEHPRLF----------APKP-------------------ASPLAD-QPAIRKAGELVKTASAD----GAMPD------------------------------------------ASARRETIGA---GRQADA----------------ATETPAAAPVLSAKEIERRKSPVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMELKNDGAAMRWTVV 786
            K   +P G   I++S++ QRA+ FA+G+ V Q  +S+GT  HPTP+G+FS+LQK++HHVSNLY A MPFMQR+TWSG+ALH GPLPGYPASHGCVR+ NDFAQ+LW  T++GARV++TR+E AP  IEH RL           AP P                     P+ D +P + +   L+KTA A     G  PD                                          A A+ + + A   G + +A                   +P   P ++AKE  RRK  VS+F+S KE RLYVRQ MEP+F TPVTI  P   +GTHV+TAM  K  G A+RWTVV
Sbjct:   62 KSQPVPKGLLHIIVSLDKQRATLFADGVAVAQSKISSGTAEHPTPLGIFSILQKSRHHVSNLYYAPMPFMQRITWSGSALHEGPLPGYPASHGCVRLPNDFAQLLWKSTKLGARVVITRDEVAPVAIEHDRLIFAKAKGEDLPAPPPQPDAVPKLDLKPALVSESKTPPVRDSEPVVTRPAALLKTADASPTLRGITPDMVKPLAPTPVRNTMASEQPTKLQRTEEQDELSMPGAPAVAAEAMAKADVVAAPMAGAKIEAPQPSAPALPAREAPPVVAMSPPVVPPVAAKEPIRRKGVVSMFISLKEQRLYVRQNMEPLFSTPVTIERPGEPIGTHVYTAMGPKAGGDALRWTVV 416          
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Match: A0A363TRQ6_9BRAD (L,D-transpeptidase n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TRQ6_9BRAD)

HSP 1 Score: 241 bits (616), Expect = 2.790e-74
Identity = 139/264 (52.65%), Postives = 170/264 (64.39%), Query Frame = 1
Query:   16 EIPAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGVFSVLQKNKHHVSNLYG-AAMPFMQRLTWSGTALHTGPLPGYPASHGCVRMTNDFAQMLWGQTRIGARVIVTREETAPFEIEHPRL--FAPKPASPLADQPAIRKAGELVKTASADGAMPDASARRETIGAG-RQADAATETPAAAPV---LSAKEIERRKSPVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMELKNDGAAMRWTVV 786
            EI  GQ  IVIS+NAQR   +++GL V + PVSTGT SHPTP G+F+V+QKN+ H SNLY  A MPFMQRLTWSG ALH G LPGYPASHGC+R+   FAQ LW  TR+G RVIV ++E AP  I H +L   APKP              E   T S + A P   A      AG  QA AAT    +A V   L+AK++  R  PVS+FVSRK+G+LYVR+G EP++  PVTIR+    LGTH+FTA+    D  A+RWTV+
Sbjct:   96 EIAKGQLHIVISLNAQRLQVYSDGLRVAESPVSTGTASHPTPTGLFNVIQKNRFHRSNLYSNAPMPFMQRLTWSGIALHEGHLPGYPASHGCIRLPRAFAQELWRTTRLGVRVIVAQDEVAPVAIAHAQLAALAPKPDE------------EEAPTRSTETAAPVRMAAASITDAGAEQAPAATREDGSADVTGILAAKDLPLRPGPVSLFVSRKDGKLYVRKGFEPIYSAPVTIRDKDKPLGTHLFTALSSDGD-RALRWTVI 346          
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Match: A0A1W6ZMV6_9HYPH (YkuD domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZMV6_9HYPH)

HSP 1 Score: 240 bits (613), Expect = 2.440e-73
Identity = 132/288 (45.83%), Postives = 183/288 (63.54%), Query Frame = 1
Query:    1 EKKDPEIPAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGVFSVLQKNKHHVSNLYG-AAMPFMQRLTWSGTALHTGPLPGYPASHGCVRMTNDFAQMLWGQTRIGARVIVTREETAPFEIEHPRLFAPKPASPLAD-QPAIRKAGE-----LVKTASA--------------DGAMPDASARRETIGAGRQADAATETPAA----APVLSAKEIERRKS-PVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMELKNDGAAMRWTVV 786
            ++K+   P G  L+V+S+ +QRA+ +ANG LV + PVS+GT +HPTP G+FSV+QKN+HH SN+Y  A MP+MQRLTWSG ALH G LPG PASHGC+R+   FA  LW  T++GARV+V+RE+TAP++I H +LF PKPA    + +P +R+  +     LV+TA                + A P A   +E++ A   ++ A    A     A  L AK+ +   S P+SVF+SRK+ +LYVRQG  P+F  PVTIR+  A++GTHV TA    +D   +RW  V
Sbjct:   92 KQKEIPTPPGPHLLVVSIKSQRAALYANGKLVMESPVSSGTPTHPTPTGIFSVIQKNRHHRSNIYSDAPMPYMQRLTWSGIALHQGVLPGRPASHGCIRLPEQFASFLWRTTKLGARVVVSREDTAPYDIAHAKLFQPKPAPTTVETEPPLRRTLDTTMPVLVRTAGMGLIETGASARHTHDETAAPTAEXXKESLTASLSSEKADIPDAILDSFAQSLQAKQKKASPSGPISVFISRKQKQLYVRQGFIPLFTAPVTIRDEQAIVGTHVLTAYNRGDDSKELRWMAV 379          
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Match: UPI000A656AFE (L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. URHD0069 TaxID=1380355 RepID=UPI000A656AFE)

HSP 1 Score: 237 bits (605), Expect = 5.620e-73
Identity = 132/261 (50.57%), Postives = 168/261 (64.37%), Query Frame = 1
Query:    7 KDPEIPAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGVFSVLQKNKHHVSNLYGAA-MPFMQRLTWSGTALHTGPLPGYPASHGCVRMTNDFAQMLWGQTRIGARVIVTREETAPFEIEHPRLFAPKPASPLADQPAIRKAGELVKTASADGAMPDASARRETIGAGRQADAATETPAAAPVLSAKEIERRKSPVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMELKNDGAAMRWTVV 786
            KDP  P G   I+IS+  QR S F NG L+ +  VSTGT  HPTP+GVFSV+ K + H SN+Y AA MP+MQR+TWSG ALH G +PGYPASHGC+R+  DFA  LW  T+ G RVI+ R++  P EI +P LF PK      D      AG+ + TA+A    P ++A  ET  A     A+ + P +AP   A    ++  P+SVFVSRK  +L+VR+G  P+FD PV I  P   LGTHVFTAME +N+GAA+RWTVV
Sbjct:   71 KDP--PKGPLQIIISIADQRVSLFDNGALIARSSVSTGTHGHPTPLGVFSVIGKQRWHRSNIYSAAPMPYMQRITWSGIALHAGVVPGYPASHGCIRLKTDFAIRLWHLTKRGTRVIIARDDVQPVEITNPHLFKPKAVPGSPDFQTATVAGKSIDTAAATHGPPVSNA--ETPEA-----ASLQVPGSAPAGVA---PKKIVPISVFVSRKLSKLFVRRGFSPLFDIPVKIENPEEPLGTHVFTAMEFQNEGAAIRWTVV 319          
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Match: A0A1H0MDK6_9BRAD (L,D-transpeptidase catalytic domain n=2 Tax=Afipia sp. GAS231 TaxID=1882747 RepID=A0A1H0MDK6_9BRAD)

HSP 1 Score: 236 bits (602), Expect = 1.130e-72
Identity = 128/262 (48.85%), Postives = 169/262 (64.50%), Query Frame = 1
Query:    7 KDPEIPAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGVFSVLQKNKHHVSNLYGAA-MPFMQRLTWSGTALHTGPLPGYPASHGCVRMTNDFAQMLWGQTRIGARVIVTREETAPFEIEHPRLFAPKPASPLADQPAIRKAGELVKTASAD-GAMPDASARRETIGAGRQADAATETPAAAPVLSAKEIERRKSPVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMELKNDGAAMRWTVV 786
            +DP  P G   I+IS+  QR S F NG L+ +  VSTGT+ HPTP+GVFSV+ K + H SN+Y AA MP+MQR+TWSG ALH G +PG+PASHGC+R+ NDFA  LW  T+ G RVI+  ++  P EI +P LF PK  S   +  A   AG+ + TA+A  G++   +   ET         + + P++AP   A    R+  P+SVFVSRK  +L+VRQG  P+FD  V I  P   LGTHVFTAME +++GAA+RWTVV
Sbjct:   60 EDP--PKGPLQIIISIADQRVSLFDNGALIARSSVSTGTQGHPTPLGVFSVISKQRWHRSNIYSAAPMPYMQRITWSGIALHAGVVPGHPASHGCIRLKNDFAIRLWHLTKRGTRVIIAHDDVQPVEITNPHLFEPKAVSGSPEFQAATVAGKSISTAAATHGSLVSKAETPETT--------SLQVPSSAPAEGA---PRKMVPISVFVSRKLSKLFVRQGFSPLFDVAVKIENPEEPLGTHVFTAMEFQSEGAAIRWTVV 308          
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Match: A0A327K5Y3_9HYPH (YkuD domain-containing protein n=3 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327K5Y3_9HYPH)

HSP 1 Score: 238 bits (608), Expect = 1.760e-72
Identity = 133/281 (47.33%), Postives = 174/281 (61.92%), Query Frame = 1
Query:   22 PAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGVFSVLQKNKHHVSNLYG-AAMPFMQRLTWSGTALHTGPLPGYPASHGCVRMTNDFAQMLWGQTRIGARVIVTREETAPFEIEHPRL--FAPKP--ASPLADQPAIRKAGELVKTASADGAMPDASA-----RRETIGAGRQADAATETPAA---------------APVLS-AKEIERRKSPVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMELKNDGAAMRWTVV 786
            P G  L+ +S+  QR   F  G  V + P+S+GTKSHPT  GVFS++QKN+HH SNLY  A MP+MQRLTWSGTA+HTG LPGYPASHGC+RM N FA  LWG T++G RVIV R    P EI HP+L  F  KP  A+P+   PA       +KTA+A+  + DA          T GAG  A A                      AP++     + ++  P+S+FVS+KEG+L+VR+  EP+++TPVTI +P A LGTHVFTAM L  +G ++RW+V+
Sbjct:  124 PRGPLLVSVSLGDQRVRVFDAGGQVAEAPISSGTKSHPTLTGVFSIIQKNRHHFSNLYANAPMPYMQRLTWSGTAMHTGALPGYPASHGCIRMPNSFASHLWGMTKLGTRVIVARSTVTPVEISHPQLARFDRKPDAATPVVTLPAAP-----IKTAAAEQTLSDAPKPAMPLATSTSGAGEAAPAXXXXXXXXXXXXXXXXXXXXXXAPLVEYGPPLPQKSGPISIFVSKKEGKLFVRKNFEPIYETPVTISQPDAALGTHVFTAMALDENGRSLRWSVM 399          
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Match: A0A1M5ISA7_9BRAD (L,D-transpeptidase catalytic domain n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5ISA7_9BRAD)

HSP 1 Score: 234 bits (598), Expect = 5.200e-72
Identity = 126/256 (49.22%), Postives = 161/256 (62.89%), Query Frame = 1
Query:   22 PAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGVFSVLQKNKHHVSNLYGAA-MPFMQRLTWSGTALHTGPLPGYPASHGCVRMTNDFAQMLWGQTRIGARVIVTREETAPFEIEHPRLFAPKPASPLADQPAIRKAGELVKTASADGAMPDASARRETIGAGRQADAATETPAAAPVLSAKEIERRKSPVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMELKNDGAAMRWTVV 786
            P G   I+IS+  QR S F NG L+ +  VSTG + HPTP+GVFSV+ K + H SN+Y AA MP+MQR+TWSG ALH G +PG+PASHGC+R+ NDFA  LW  T+ G RVI+ R+E  P EI +P LF PK  S   +      AG+ + TA++  A  + SA      A      +   P +AP   A    ++  P+SVFVSRK  +L+VRQG  P+FD PV I  P   LGTHVFTAME +N  AA+RWTVV
Sbjct:   63 PKGPLQIIISIADQRVSLFDNGALIARSSVSTGVQGHPTPLGVFSVISKQRWHRSNIYSAAPMPYMQRITWSGIALHAGVVPGHPASHGCIRLKNDFAVRLWHLTKRGTRVIIARDEVQPVEITNPHLFEPKAVSGSPEFQTATVAGKSIGTAASTAAATNGSA---VSNAETPETTSLPVPGSAPAGGA---PKKMVPISVFVSRKLSKLFVRQGFTPLFDVPVEIENPEEPLGTHVFTAMEFQNGAAAIRWTVV 312          
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Match: UPI001BA63711 (L,D-transpeptidase n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA63711)

HSP 1 Score: 232 bits (591), Expect = 2.240e-71
Identity = 125/261 (47.89%), Postives = 161/261 (61.69%), Query Frame = 1
Query:   22 PAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGVFSVLQKNKHHVSNLYGAA-MPFMQRLTWSGTALHTGPLPGYPASHGCVRMTNDFAQMLWGQTRIGARVIVTREETAPFEIEHPRLFAPKPASPLADQPAIRKAGELVKTASADGAMPDASARRETIGAGRQADAATETPAAAPV-----LSAKEIERRKSPVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMELKNDGAAMRWTVV 786
            P G   I+IS+  QR S F NG L+ +  VSTGT+ HPTP+GVFSV+ K + H SN+Y +A MP+MQR+TWSG ALH G +PG+PASHGC+R+ NDFA  LW  T+ G RVI+   +  P EI  P LF PK  S   +  A    G+ V TA+A    P +                TETP A  +      +A+   R+ +P+SVFVSRK  +L+VRQG  P+FD  V I  P   LGTHVFTAME +++GAA+RWTVV
Sbjct:   34 PKGPLQIIISIADQRVSLFDNGALIARSTVSTGTQGHPTPLGVFSVISKQRWHRSNIYSSAPMPYMQRITWSGIALHAGVVPGHPASHGCIRLKNDFAIRLWHLTKRGTRVIIAHHDVQPVEITSPHLFKPKAVSGSPEFQAATVVGKSVSTAAATHGSPVSK---------------TETPEATSLQVPNSAAAEGTPRKMAPISVFVSRKLSKLFVRQGFSPLFDVAVKIENPEEPLGTHVFTAMEFQSEGAAIRWTVV 279          
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Match: A0A1Q4DA47_9HYPH (YkuD domain-containing protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DA47_9HYPH)

HSP 1 Score: 231 bits (589), Expect = 2.250e-70
Identity = 126/266 (47.37%), Postives = 170/266 (63.91%), Query Frame = 1
Query:   16 EIPAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGVFSVLQKNKHHVSNLYG-AAMPFMQRLTWSGTALHTGPLPGYPASHGCVRMTNDFAQMLWGQTRIGARVIVTREETAPFEIEHPRLFAPKPASPLADQPAIRKAGELVKTASADGAMPDASARRETIGAGRQADAATET--PAAAPVLSAK------EIERRKSPVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMELKNDGAAMRWTVV 786
            +IPAG   +++S   QR ++++NG+ V + PVSTG   HPTP+GVFSV+ K++HH SN+Y  A MP+M R+TWSG ALH G LPG PASHGC+R+   FA  L+  +++GARVIVTR+  AP  I+  RL AP  A+P      + +A  +++ A+A+  + +  A      AG Q    T T      PV++A       E+  RK PV  FVSRK+G+LYVRQG  P+F+T VTI EP    GTHVFT ME+K DGAA RWT +
Sbjct:   70 KIPAGPMQLIVSTARQRVTWYSNGIPVAEAPVSTGVPDHPTPLGVFSVIAKSRHHKSNIYSDAPMPYMHRITWSGIALHQGVLPGRPASHGCIRLPESFASRLFATSKLGARVIVTRDPAAPVAIDSARLIAPAEAAPAPSADLVPEAQRVIERAAAESGVLEKPASPANQIAGVQVADVTGTVVDGVPPVIAAPRLIFPAEMPNRKGPVQAFVSRKDGKLYVRQGFAPLFETAVTIAEPKQPWGTHVFTVMEIK-DGAA-RWTAI 333          
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Match: A0A537N7B1_9PROT (L,D-transpeptidase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537N7B1_9PROT)

HSP 1 Score: 230 bits (587), Expect = 2.980e-70
Identity = 128/277 (46.21%), Postives = 169/277 (61.01%), Query Frame = 1
Query:   16 EIPAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGVFSVLQKNKHHVSNLYG-AAMPFMQRLTWSGTALHTGPLPGYPASHGCVRMTNDFAQMLWGQTRIGARVIVTREETAPFEIEHPRLFAP--KPASPL-----ADQPAIR---------KAGELVKTASADGAMP---DASARRETIGAGRQADAATETPAAAPVLSAKEIERRKSPVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMELKNDGAAMRWTVV 786
            E   G   IV+S+ +QR + ++NG  V QGPVSTGT  HPTPMGVFS++QK+++H SNLYG A M +MQR+TWSG A+H G LPG+ ASHGC+R+++ FA  LW  T++G RVIV R +  P E EHP+LF P  KPA P      A    IR         +A ++ + A+AD   P   +A   +     GRQ+D               +  +R   VSVFVSRKEG+++VRQG  P+FD PV I EP   LGTHVFTA+  + DG  MRW ++
Sbjct:   57 EASKGVLQIVVSIGSQRVTLYSNGTRVAQGPVSTGTPGHPTPMGVFSIIQKDRYHHSNLYGNAPMYYMQRITWSGVAMHEGALPGHAASHGCIRLSHGFAAALWPTTKLGVRVIVARTDPTPTEFEHPKLFVPRAKPADPADAVSEARPTLIRVAESTTTDARALDMTRAAAADPEKPAPTNADPPKPLAPTGRQSD---------------QTLKRAGHVSVFVSRKEGKIFVRQGFAPLFDMPVVIAEPDRPLGTHVFTALGARPDGGGMRWNLL 318          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17344.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EWZ2_9HYPH2.660e-7441.41ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Rhodopl... [more]
A0A363TRQ6_9BRAD2.790e-7452.65L,D-transpeptidase n=1 Tax=Bradyrhizobiaceae bacte... [more]
A0A1W6ZMV6_9HYPH2.440e-7345.83YkuD domain-containing protein n=1 Tax=Pseudorhodo... [more]
UPI000A656AFE5.620e-7350.57L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. URHD... [more]
A0A1H0MDK6_9BRAD1.130e-7248.85L,D-transpeptidase catalytic domain n=2 Tax=Afipia... [more]
A0A327K5Y3_9HYPH1.760e-7247.33YkuD domain-containing protein n=3 Tax=Rhodoplanes... [more]
A0A1M5ISA7_9BRAD5.200e-7249.22L,D-transpeptidase catalytic domain n=1 Tax=Bradyr... [more]
UPI001BA637112.240e-7147.89L,D-transpeptidase n=2 Tax=Bradyrhizobium TaxID=37... [more]
A0A1Q4DA47_9HYPH2.250e-7047.37YkuD domain-containing protein n=1 Tax=Rhizobiales... [more]
A0A537N7B1_9PROT2.980e-7046.21L,D-transpeptidase n=1 Tax=Alphaproteobacteria bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17344contigP-wetherbeei_contig17344:1..786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380355.JNIJ01000111_gene5343
PFAMsPG_binding_1,YkuD
Model size786
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-74
EggNOG OGsCOG1376@1|root,COG1376@2|Bacteria,1Q823@1224|Proteobacteria,2TV64@28211|Alphaproteobacteria,3JWRV@41294|Bradyrhizobiaceae
DescriptionL,D-transpeptidase catalytic domain
Cds size786
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.8908648-CDS-P-wetherbeei_contig17344:0..7861683186114.8908648-CDS-P-wetherbeei_contig17344:0..786Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17344 1..786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17344.1.1prot_P-wetherbeei_contig17344.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17344 1..786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17344.1.1

>prot_P-wetherbeei_contig17344.1.1 ID=prot_P-wetherbeei_contig17344.1.1|Name=mRNA_P-wetherbeei_contig17344.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp
EKKDPEIPAGQRLIVISVNAQRASFFANGLLVRQGPVSTGTKSHPTPMGV
FSVLQKNKHHVSNLYGAAMPFMQRLTWSGTALHTGPLPGYPASHGCVRMT
NDFAQMLWGQTRIGARVIVTREETAPFEIEHPRLFAPKPASPLADQPAIR
KAGELVKTASADGAMPDASARRETIGAGRQADAATETPAAAPVLSAKEIE
RRKSPVSVFVSRKEGRLYVRQGMEPVFDTPVTIREPAAVLGTHVFTAMEL
KNDGAAMRWTVV
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mRNA from alignment at P-wetherbeei_contig17344:1..786-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17344.1.1 ID=mRNA_P-wetherbeei_contig17344.1.1|Name=mRNA_P-wetherbeei_contig17344.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig17344:1..786- (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGAAAGACCCGGAGATTCCAGCGGGCCAGCGCCTGATCGTCATATC GGTCAACGCGCAGCGCGCGTCGTTCTTCGCCAACGGCTTGCTGGTGCGCC AGGGCCCGGTGTCGACCGGAACGAAATCGCACCCGACACCGATGGGCGTG TTCAGCGTCCTGCAGAAGAACAAGCACCACGTTTCCAATCTTTACGGTGC CGCCATGCCGTTCATGCAGCGGCTGACGTGGTCGGGAACCGCCCTTCACA CCGGCCCCCTGCCCGGCTATCCGGCGTCGCACGGCTGCGTTCGCATGACC AACGATTTCGCCCAGATGCTGTGGGGCCAGACCCGGATCGGCGCGCGCGT CATCGTCACCCGCGAGGAGACAGCGCCGTTCGAGATCGAGCATCCACGGC TGTTCGCGCCGAAACCGGCCTCGCCGCTGGCCGATCAGCCGGCAATCCGA AAAGCCGGCGAACTGGTGAAGACCGCCAGCGCCGACGGTGCCATGCCCGA CGCATCGGCGCGGCGCGAGACGATCGGCGCGGGCCGCCAGGCCGACGCGG CGACCGAAACGCCCGCGGCAGCGCCGGTGTTGAGTGCGAAGGAGATCGAA CGCCGCAAGAGCCCGGTGTCGGTGTTCGTCAGCCGCAAGGAAGGCCGACT CTATGTCCGCCAGGGCATGGAGCCGGTGTTCGACACGCCAGTGACGATCC GCGAGCCGGCGGCGGTGCTCGGCACCCATGTGTTCACCGCCATGGAGCTC AAGAACGACGGCGCGGCGATGCGCTGGACCGTGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17344:1..786-

>mRNA_P-wetherbeei_contig17344.1.1 ID=mRNA_P-wetherbeei_contig17344.1.1|Name=mRNA_P-wetherbeei_contig17344.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig17344:1..786- (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGAAAGACCCGGAGATTCCAGCGGGCCAGCGCCTGATCGTCATATC
GGTCAACGCGCAGCGCGCGTCGTTCTTCGCCAACGGCTTGCTGGTGCGCC
AGGGCCCGGTGTCGACCGGAACGAAATCGCACCCGACACCGATGGGCGTG
TTCAGCGTCCTGCAGAAGAACAAGCACCACGTTTCCAATCTTTACGGTGC
CGCCATGCCGTTCATGCAGCGGCTGACGTGGTCGGGAACCGCCCTTCACA
CCGGCCCCCTGCCCGGCTATCCGGCGTCGCACGGCTGCGTTCGCATGACC
AACGATTTCGCCCAGATGCTGTGGGGCCAGACCCGGATCGGCGCGCGCGT
CATCGTCACCCGCGAGGAGACAGCGCCGTTCGAGATCGAGCATCCACGGC
TGTTCGCGCCGAAACCGGCCTCGCCGCTGGCCGATCAGCCGGCAATCCGA
AAAGCCGGCGAACTGGTGAAGACCGCCAGCGCCGACGGTGCCATGCCCGA
CGCATCGGCGCGGCGCGAGACGATCGGCGCGGGCCGCCAGGCCGACGCGG
CGACCGAAACGCCCGCGGCAGCGCCGGTGTTGAGTGCGAAGGAGATCGAA
CGCCGCAAGAGCCCGGTGTCGGTGTTCGTCAGCCGCAAGGAAGGCCGACT
CTATGTCCGCCAGGGCATGGAGCCGGTGTTCGACACGCCAGTGACGATCC
GCGAGCCGGCGGCGGTGCTCGGCACCCATGTGTTCACCGCCATGGAGCTC
AAGAACGACGGCGCGGCGATGCGCTGGACCGTGGTC
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