mRNA_P-wetherbeei_contig17197.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17197.1.1
Unique NamemRNA_P-wetherbeei_contig17197.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Match: D8LBP0_ECTSI (Expressed protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP0_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.370e-28
Identity = 63/98 (64.29%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    1 ITDRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGIATAAFATALLRGDVAPGVWFPEEAFAAPAPRRQLLEEATRGAFLWERE 294
            ITD+LVGATNAMR+EAV +        DG     AVL YAH+DLE CVGIATAAF  A LRGDV PGVWFPEEAF   A R  L ++ATRGAF+WER+
Sbjct:  381 ITDKLVGATNAMRLEAVAK--------DGR---KAVLNYAHEDLEVCVGIATAAFVVATLRGDVRPGVWFPEEAFDDEAKRGLLFDDATRGAFMWERQ 467          
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Match: A0A835YY64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY64_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.050e-27
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 ITDRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGIATAAFATALLRGDVAPGVWFPEEAFAAPAPRRQLLEEATRGAFLWE 288
            +TD LVG+ NAM+V A  + DGS           AV+ YAHKDLEECVGIATAAFA A LRGD+  G+W+PEEA    A R +LL EATRGAFLWE
Sbjct:  121 LTDMLVGSANAMKVTATAK-DGS----------TAVMTYAHKDLEECVGIATAAFAAAALRGDIKTGIWYPEEALRDEAARERLLAEATRGAFLWE 205          
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Match: A0A4D9D814_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D814_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.240e-18
Identity = 50/100 (50.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:    1 ITDRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGIATAAFATALLRGDVAPGVWFPEEAFAAPAPRRQLLEEATRGAFLWEREGG 300
            + D LVG  NAMRV A  +R        G  +A A+  YAH+DLE CVG   AAFA  +L G VAPGVW+PEEAFA+   RR + + AT+G   WER  G
Sbjct:  331 LVDTLVGTANAMRVTATSKR--------GTESATAL--YAHEDLETCVGEGIAAFAAQVLDGKVAPGVWYPEEAFASLEGRRDVFQLATKGCSTWERPAG 420          
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Match: A0A7S4QKN8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QKN8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.720e-17
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 ITDRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGIATAAFATALLRGDVAPGVWFPEEAFAAPAPRRQLLEEATRGAFLWE 288
            + D+LVGATNAMRV+A  R        DG V     +R AH DLE+CVG+ATAAFA  +LRG V PGVWFP E      PR  +L  A   AF++E
Sbjct:  242 LVDKLVGATNAMRVDATAR--------DGEVV---TMRIAHPDLEQCVGLATAAFALEVLRGTVPPGVWFPAE--LPEEPRSNILLAAKEDAFVYE 324          
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Match: A0A7S4BYK7_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BYK7_CHRCT)

HSP 1 Score: 77.8 bits (190), Expect = 2.440e-16
Identity = 46/96 (47.92%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 ITDRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGIATAAFATALLRGDVAPGVWFPEEAFAAPAPRRQLLEEATRGAFLWE 288
            + D+LVGATNAMRV+A  R D +G            LR AH DLE+CVG+ATAAFA  L R  V  GVW+P E       R  +L+    GAF+WE
Sbjct:   38 LVDKLVGATNAMRVDAT-RTDETG------KKRTVTLRVAHDDLEQCVGLATAAFALELFRKTVPAGVWYPAE--LQSKARSSILDRVKEGAFVWE 124          
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Match: A0A7S2N2T9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N2T9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.180e-15
Identity = 46/96 (47.92%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 ITDRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGIATAAFATALLRGDVAPGVWFPEEAFAAPAPRRQLLEEATRGAFLWE 288
            + D+LVGATNAMRV+A  +        DG V     ++ AH DLE+CVG+ATAAFA  ++RG V PGVWFP E      PR  +L  A   AF++E
Sbjct:  322 LVDKLVGATNAMRVDATAQ--------DGEVI---TMKIAHPDLEQCVGLATAAFAVEVMRGTVPPGVWFPAE--LPDEPRSNILLTAKEDAFVYE 404          
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Match: A0A7S2GAF4_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GAF4_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 3.490e-15
Identity = 50/110 (45.45%), Postives = 58/110 (52.73%), Query Frame = 1
Query:    1 ITDRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGIATAAFATALLRG----------DVAPGVWFPEEAFAAPA-PRRQLLEEATRGAFLWEREG 297
            + DRLVGATNAMRV+A             A      LR AH DLE+CVG+ATAAF   +LRG           V PGVW+P E    PA  R  +L  A  GAF+WE  G
Sbjct:   54 LVDRLVGATNAMRVDAWS-----------ASGEQVTLRCAHPDLEQCVGLATAAFGMEILRGRTGEGGSGDTTVQPGVWYPAE---LPANARSNILAAAREGAFIWEMGG 149          
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Match: A0A1Q9CF78_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CF78_SYMMI)

HSP 1 Score: 76.6 bits (187), Expect = 3.570e-14
Identity = 44/94 (46.81%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    7 DRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGIATAAFATALLRGDVAPGVWFPEEAFAAPAPRRQLLEEATRGAFLWE 288
            DRLVGATNAMRV+A  RRD               LR  H DLE+CVG+ATAAF   +L+G V PG WFP E     A R ++ +    G+  WE
Sbjct: 3262 DRLVGATNAMRVDA--RRDSG---------EAVTLRITHSDLEDCVGLATAAFGLEVLQGQVPPGAWFPAE---MAANRARIFQRVRHGSINWE 3341          
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Match: A0A2D6FCK6_9CYAN (Sacchrp_dh_NADP domain-containing protein n=1 Tax=Cyanobium sp. ARS6 TaxID=2024869 RepID=A0A2D6FCK6_9CYAN)

HSP 1 Score: 74.3 bits (181), Expect = 1.870e-13
Identity = 46/105 (43.81%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 ITDRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGIATAAFATALLRG---------DVAPGVWFPEEAFAAPAPRRQLLEEATRGAFLWE 288
            + D+LVGATNAMRV+AV + D   G     +     LR  H DLE+CVG ATAAFA  +LRG          ++ GVW+P E  A    R  +LE A   A +WE
Sbjct:  304 LVDKLVGATNAMRVDAVSKADAGSG-----MPLKVTLRCVHADLEDCVGQATAAFAMEMLRGRAGASSAERTISAGVWYPVELQAKA--RTNILEVARENALVWE 401          
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Match: A0A163YDL2_9SYNE (Putative trans-acting enoyl reductasec n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A163YDL2_9SYNE)

HSP 1 Score: 73.9 bits (180), Expect = 2.520e-13
Identity = 46/105 (43.81%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 ITDRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGIATAAFATALLRG---------DVAPGVWFPEEAFAAPAPRRQLLEEATRGAFLWE 288
            + D+LVGATNAMRV+AV +     G  D  + A   LR  H DLE+CVG ATAAFA  +LRG          +  GVW+P E  A    R  +L+  +  A LWE
Sbjct:  296 VVDKLVGATNAMRVDAVSK-----GNCDSGLPAKVTLRCVHADLEDCVGQATAAFAIEMLRGRPGLSSAEQTIPAGVWYPAELQAKA--RNNILQVVSEKALLWE 393          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17197.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBP0_ECTSI2.370e-2864.29Expressed protein n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YY64_9STRA2.050e-2760.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D814_9STRA2.240e-1850.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4QKN8_9STRA3.720e-1751.04Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4BYK7_CHRCT2.440e-1647.92Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2N2T9_9STRA1.180e-1547.92Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2GAF4_9EUKA3.490e-1545.45Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A1Q9CF78_SYMMI3.570e-1446.81Uncharacterized protein n=2 Tax=Symbiodinium TaxID... [more]
A0A2D6FCK6_9CYAN1.870e-1343.81Sacchrp_dh_NADP domain-containing protein n=1 Tax=... [more]
A0A163YDL2_9SYNE2.520e-1343.81Putative trans-acting enoyl reductasec n=3 Tax=unc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17197contigP-wetherbeei_contig17197:1151..1450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBP0
PFAMsSacchrp_dh_NADP
Model size300
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.88e-29
EggNOG OGsCOG1748@1|root,2QQSS@2759|Eukaryota
DescriptionSaccharopine dehydrogenase NADP binding domain
Cds size300
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186110.4900553-CDS-P-wetherbeei_contig17197:1150..14501683186110.4900553-CDS-P-wetherbeei_contig17197:1150..1450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17197 1151..1450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17197.1.1prot_P-wetherbeei_contig17197.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17197 1151..1450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17197.1.1

>prot_P-wetherbeei_contig17197.1.1 ID=prot_P-wetherbeei_contig17197.1.1|Name=mRNA_P-wetherbeei_contig17197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
ITDRLVGATNAMRVEAVPRRDGSGGGGDGAVAAPAVLRYAHKDLEECVGI
ATAAFATALLRGDVAPGVWFPEEAFAAPAPRRQLLEEATRGAFLWEREGG
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mRNA from alignment at P-wetherbeei_contig17197:1151..1450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17197.1.1 ID=mRNA_P-wetherbeei_contig17197.1.1|Name=mRNA_P-wetherbeei_contig17197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig17197:1151..1450- (Phaeothamnion wetherbeei SAG_119_79)
ATCACGGACCGCCTGGTAGGTGCCACCAACGCAATGCGCGTGGAAGCCGT TCCTCGCCGCGACGGCAGCGGCGGCGGCGGCGATGGAGCCGTTGCTGCGC CGGCGGTGCTGCGCTATGCTCACAAAGACTTAGAGGAGTGCGTCGGCATC GCCACGGCGGCGTTCGCGACGGCGTTGCTACGCGGCGATGTCGCCCCCGG CGTGTGGTTTCCCGAGGAGGCGTTCGCGGCGCCGGCGCCGCGGCGGCAGC TGCTGGAGGAAGCGACCCGCGGCGCTTTTTTGTGGGAGCGTGAAGGCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17197:1151..1450-

>mRNA_P-wetherbeei_contig17197.1.1 ID=mRNA_P-wetherbeei_contig17197.1.1|Name=mRNA_P-wetherbeei_contig17197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig17197:1151..1450- (Phaeothamnion wetherbeei SAG_119_79)
ATCACGGACCGCCTGGTAGGTGCCACCAACGCAATGCGCGTGGAAGCCGT
TCCTCGCCGCGACGGCAGCGGCGGCGGCGGCGATGGAGCCGTTGCTGCGC
CGGCGGTGCTGCGCTATGCTCACAAAGACTTAGAGGAGTGCGTCGGCATC
GCCACGGCGGCGTTCGCGACGGCGTTGCTACGCGGCGATGTCGCCCCCGG
CGTGTGGTTTCCCGAGGAGGCGTTCGCGGCGCCGGCGCCGCGGCGGCAGC
TGCTGGAGGAAGCGACCCGCGGCGCTTTTTTGTGGGAGCGTGAAGGCGGT
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