mRNA_P-wetherbeei_contig17061.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17061.1.1
Unique NamemRNA_P-wetherbeei_contig17061.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Match: A0A835ZAR5_9STRA (Ribonuclease H-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.310e-19
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    4 ESVFIVDLLILGNSRHVAALDAALAPMLGCRETIKLGQSFDADLRQLRAGFPAIRAFRKVEGVVELNALHFHCHGGGGRGAGHGTWKRDMVGLAPLTAIYLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAMRLKIGE 444
            E+VF++DLL L       A+D+AL       + +K+G     D+R+L   +P + AFR++ GV+E NA+H                  +M+ L  L   YL   LSKG+Q+S+W  RPL   Q+ YA+ D LV+L L+D+M L+I E
Sbjct:  120 EAVFLIDLLAL-LPLCAEAMDSALYHCFRSEDILKVGHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQLD----------PEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEIFE 255          
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Match: A0A2D4BG54_PYTIN (3'-5' exonuclease domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG54_PYTIN)

HSP 1 Score: 91.7 bits (226), Expect = 3.470e-19
Identity = 54/152 (35.53%), Postives = 80/152 (52.63%), Query Frame = 1
Query:    1 EESVFIVDLLILGNSRHVAALDAALAPMLGCRETIKLGQSFDADLRQLRAGFPAIRAFRKVEGVVELNALHFHCHGGGGRGAGHGTWKRDMVGLAPLTAIYLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAM--RLKIGEWH 450
            +E VFI+DLL L    +    +  L  +   +  IKLGQS   DL++L + +P    FR  + VVE+N +     G               + L  L  +YLG+RL+K +Q+S+W  RPL   Q+ YA+ D LV++HLYD +  RLK  + H
Sbjct:   82 KEEVFILDLLKLKPHMY----NKTLLGLFLSQSVIKLGQSLLGDLKELASSYPGASCFRVAKAVVEVNDMSISLMGA-----------HQALSLQKLVFLYLGKRLTKTQQMSNWNRRPLTTSQIHYAACDALVLIHLYDVLLERLKANKPH 218          
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Match: D8LQB4_ECTSI (3\'-5\' exonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB4_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.650e-19
Identity = 56/148 (37.84%), Postives = 80/148 (54.05%), Query Frame = 1
Query:    1 EESVFIVDLLILGNSRHVA-ALDAALAPMLGCRETIKLGQSFDADLRQLRAGFPAIRAFRKVEGVVELNALHFHCHGGGGRGAGHGTWKRDMVGLAPLTAIYLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAMRLKIG 441
            EE V ++DLL L +   +  +L  AL+   G    +KLG     DL ++   F       +V GV+ LNAL+    GG     G     RD+ GL  L ++YLGR LSK +Q+S W  RPL+  Q+ YA+ D LV L ++DA+ L +G
Sbjct:   32 EEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLGVGLANDLDEMSFAFEETPFLEQVPGVLNLNALNTKLTGGACNDQGI---PRDL-GLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVFDALLLALG 175          
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Match: A0A2T7NMS5_POMCA (3'-5' exonuclease domain-containing protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NMS5_POMCA)

HSP 1 Score: 74.7 bits (182), Expect = 1.130e-12
Identity = 54/165 (32.73%), Postives = 82/165 (49.70%), Query Frame = 1
Query:    4 ESVFIVDLLILGNSRHVAALDAALAPMLGCRET-IKLGQSFDADLRQLRAGFPAI-RAFRKVEGVVELNAL------HFHCHGGGGRG----AGHGTWKRDMV---GLAPLTAIYLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAMRLKIGEWHL 453
            + VF++D++ L +          LA  + C E+ + LG    +DL+ L   FP +      ++ VV+L  L      +FH    G  G          + DMV   GL+ L   YLG++LSKGEQ+S W  RPLR  Q  YA+LD  V+L +Y  ++ K+  + L
Sbjct:  484 DHVFLIDVINLASILEEKEWKQ-LAAAIFCNESNVTLGYGLHSDLKMLLKSFPCMSEELFNLKRVVDLEQLAKQVSPNFHVEFPGNAGDTAFTSRDVKETDMVDQRGLSALVQQYLGKQLSKGEQMSDWERRPLRPTQKTYAALDAYVLLEIYKQLKTKVQHYGL 647          
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Match: A0A7S4PRF6_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PRF6_GUITH)

HSP 1 Score: 65.5 bits (158), Expect = 1.730e-9
Identity = 40/133 (30.08%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   61 LDAALAPMLGCRETIKLGQSFDADLRQLRAGFPAIRAFRKVEGVVE-----LNALHFHCHGGGGRGAGHGTWKRDMVGLAPLTAIYLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAMRLKIGE 444
            L+  L P L   + +KLG SF+ D++ L + FP +   ++++ +V+     ++  H             G   R   GL+      LG  LSK  QVS+W  RPL ++Q+RYA+ D   ++ LY  +  +I E
Sbjct:  248 LEEILGPFLLREDILKLGFSFEMDMKMLLSSFPRLLFLQQLQRLVDDHHAFVDIKHMVM--------ASGRLSRQNFGLSAACKSLLGHPLSKEMQVSNWNLRPLADEQIRYAATDAQCLVLLYRVLGPEIAE 372          
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Match: A0A6A3CVQ4_HIBSY (Polynucleotidyl transferase isoform 3 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CVQ4_HIBSY)

HSP 1 Score: 65.1 bits (157), Expect = 2.340e-9
Identity = 43/143 (30.07%), Postives = 68/143 (47.55%), Query Frame = 1
Query:    1 EESVFIVDLLILGNSRHVAALDAALAPMLGCRETIKLGQSFDADLRQLRAGFPAIRAFRKVEGVVELNALHFHCHGGGGRGAGHGTWKRDMVGLAPLTAIYLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAMR 429
            ++ VFI DL+ L        LD  L  +L     +KLG SF  D++QL   +  ++ F+    ++++  L                +K    GL+ L    LG  L+K  + S+W  RPL + QL YASLD  V++ L+  +R
Sbjct:  405 DKKVFIFDLIKLYEDVP-DVLDNCLTRILQSPRILKLGYSFQCDIKQLAQSYGDLKCFKSYNMLLDIQKL----------------FKDPRGGLSGLAEKILGAGLNKTRRNSNWEQRPLTQNQLEYASLDAAVLVELFYRVR 530          
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Match: A0A524NT85_9BACT (3'-5' exonuclease domain-containing protein 2 n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=A0A524NT85_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 6.650e-9
Identity = 40/117 (34.19%), Postives = 59/117 (50.43%), Query Frame = 1
Query:   82 MLGCRETIKLGQSFDADLRQLRAGFP-AIRAFRKVEGVVELNALHFHCHGGGGRGAGHGTWKRDMVGLAPLTAIYLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAMR 429
            +L     +K+G S   DLR+LR+ F    + F  ++  VE                    ++ +  GL  L+AI LGRR+SK +QVS+W A  L E QLRYA+ D  + L +Y  +R
Sbjct:   91 LLSRENPLKVGVSLHDDLRRLRSDFQFEPQGFLDLQQYVE-------------------AFRIEEKGLKKLSAIVLGRRISKSQQVSNWDADLLTEAQLRYAATDAWICLKIYYKLR 188          
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Match: A0A1Y4AKM2_9BACT (3'-5' exonuclease n=1 Tax=Alistipes sp. An31A TaxID=1965631 RepID=A0A1Y4AKM2_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 7.590e-9
Identity = 42/123 (34.15%), Postives = 61/123 (49.59%), Query Frame = 1
Query:   61 LDAALAPMLGCRETIKLGQSFDADLRQLRAGFPAIRAFRKVEGVVELNALHFHCHGGGGRGAGHGTWKRDMVGLAPLTAIYLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAMR 429
            L A L  +LG  +  K+G     DLR LR     +R FR   G V+L A+                W  +   L  L+AI LG+R+SK +++S+W A  L +KQL YA+ D  V   +YD ++
Sbjct:   89 LAAPLLHLLGSAKVQKVGADVAGDLRSLRQ----LRHFRDG-GFVDLQAIA-------------PDWGIEEKSLRKLSAIVLGKRVSKAQRLSNWEAAQLTDKQLLYAATDAWVCTEIYDKLQ 193          
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Match: A0A813M426_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813M426_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 1.120e-8
Identity = 47/148 (31.76%), Postives = 72/148 (48.65%), Query Frame = 1
Query:   10 VFIVDLLILGNSRHVAALDAALAPMLGCRETIKLGQSFDADLRQLRAGFPAIR-AFRKV-EGVVELNALHFHCHGGGGRGAGHGTWKRDMV-GLAPLTAIYLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAMRLKIGE 444
            VF+VD   L +      +D     +L   + IKLG  FD D ++L   FP  +  F +  + V+ +N +            G    K     GL+ LT    G+ L K E +S+W  RPLR  Q+RYASLD  V++ ++D ++ +I E
Sbjct:  527 VFVVDSRFLVDQLEEVDIDRFGNLVLFSEKIIKLGYDFDQDSKKLFHSFPKFKHVFSEFSDHVINVNQVISDFEKKYPLFTGMDQSKPVKTKGLSKLTECVFGKPLDKSECMSNWQNRPLRNDQIRYASLDAYVLIEIHDFLQKRIKE 674          
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Match: A0A7S0DV66_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DV66_9CRYP)

HSP 1 Score: 62.0 bits (149), Expect = 2.300e-8
Identity = 40/133 (30.08%), Postives = 63/133 (47.37%), Query Frame = 1
Query:   61 LDAALAPMLGCRETIKLGQSFDADLRQLRAGFPAIRAFRKVEGVVE-----LNALHFHCHGGGGRGAGHGTWKRDMVGLAPLTAIYLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAMRLKIGE 444
            LD  L   L   + +KLG SF+ D++ L A FP +   ++++ +V+     ++  H             G       GL+      LG  LSK  QVS+W  RPL E+Q+RYA+ D   ++ LY  +   + E
Sbjct:  194 LDEILGSFLVREDILKLGFSFEMDMKMLLASFPRLLFLQELQRLVDQHHAFVDIKHMVI--------ASGRMNNQGFGLSAACKNLLGNPLSKEMQVSNWKLRPLSEEQIRYAATDAQCLVLLYRCLGPDLAE 318          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17061.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAR5_9STRA1.310e-1936.73Ribonuclease H-like domain-containing protein (Fra... [more]
A0A2D4BG54_PYTIN3.470e-1935.533'-5' exonuclease domain-containing protein n=1 Ta... [more]
D8LQB4_ECTSI3.650e-1937.843\'-5\' exonuclease family protein n=1 Tax=Ectocar... [more]
A0A2T7NMS5_POMCA1.130e-1232.733'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A7S4PRF6_GUITH1.730e-930.08Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A6A3CVQ4_HIBSY2.340e-930.07Polynucleotidyl transferase isoform 3 n=2 Tax=Hibi... [more]
A0A524NT85_9BACT6.650e-934.193'-5' exonuclease domain-containing protein 2 n=1 ... [more]
A0A1Y4AKM2_9BACT7.590e-934.153'-5' exonuclease n=1 Tax=Alistipes sp. An31A TaxI... [more]
A0A813M426_9BILA1.120e-831.76Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A7S0DV66_9CRYP2.300e-830.08Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17061contigP-wetherbeei_contig17061:603..1397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36331.EPrPI00000017511
PFAMsDNA_pol_A_exo1
Model size468
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.88e-19
EggNOG OGsKOG2207@1|root,KOG2207@2759|Eukaryota,1MDC5@121069|Pythiales
Description3'-5' exonuclease
Cds size468
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186106.5912943-CDS-P-wetherbeei_contig17061:602..6931683186106.5912943-CDS-P-wetherbeei_contig17061:602..693Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17061 603..693 -
1683186106.6046543-CDS-P-wetherbeei_contig17061:1020..13971683186106.6046543-CDS-P-wetherbeei_contig17061:1020..1397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17061 1021..1397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17061.1.1prot_P-wetherbeei_contig17061.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17061 603..1397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17061.1.1

>prot_P-wetherbeei_contig17061.1.1 ID=prot_P-wetherbeei_contig17061.1.1|Name=mRNA_P-wetherbeei_contig17061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
EESVFIVDLLILGNSRHVAALDAALAPMLGCRETIKLGQSFDADLRQLRA
GFPAIRAFRKVEGVVELNALHFHCHGGGGRGAGHGTWKRDMVGLAPLTAI
YLGRRLSKGEQVSSWGARPLREKQLRYASLDVLVMLHLYDAMRLKIGEWH
LLESAR
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mRNA from alignment at P-wetherbeei_contig17061:603..1397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17061.1.1 ID=mRNA_P-wetherbeei_contig17061.1.1|Name=mRNA_P-wetherbeei_contig17061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig17061:603..1397- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAAAGCGTTTTTATCGTCGACCTTTTGATCCTCGGAAACAGCCGCCA TGTCGCCGCCCTTGACGCCGCCCTGGCGCCCATGCTGGGATGCCGCGAAA CGATCAAGCTCGGGCAGTCCTTCGACGCCGACCTCCGGCAGTTGCGGGCG GGCTTTCCGGCCATTCGAGCGTTTCGGAAGGTGGAAGGAGTAGTGGAACT GAACGCGCTGCATTTTCACTGCCATGGCGGCGGCGGCAGGGGGGCCGGTC ACGGCACCTGGAAGCGGGACATGGTGGGGCTGGCGCCGTTGACGGCCATA TATCTTGGGCGGCGGCTGAGCAAGGGGGAGCAAGTGAGCAGCTGGGGCGC GCGGCCTCTCCGCGAGAAACAGCTCAGGTGAGGAGGAAAGCGGGACAGAC ATGGTTTCATCGTGGTTTCAGCTCTTATTTCCAGGGTTGTGCACGCGTTT CTGAAAGGTCGCGGTTGTGCTGTTGGATAAAAAAAGGTCCCCCCGACTTG GTTTTGTGCTGGGGCAGACTTCCGTCATTTGCGTTGGCAAGCAACAGTGG GAGACCAGGTGGGCGGCAAAAATTCCCTTAGATCATGAAGCGGACTGCCG CCACCGCTGCTGCACTTTAATCGGCCTGCCGCGGCTGCGGCGTTTGACTG ATACTGCCCCGTAATATCGCCCTTCTTCACCGCCCGCAACGTCCGGAAAA CTAGATACGCTTCGCTCGATGTATTAGTGATGCTGCACCTTTACGACGCG ATGCGATTGAAGATCGGCGAGTGGCATCTGCTCGAGAGCGCCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17061:603..1397-

>mRNA_P-wetherbeei_contig17061.1.1 ID=mRNA_P-wetherbeei_contig17061.1.1|Name=mRNA_P-wetherbeei_contig17061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig17061:603..1397- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAAAGCGTTTTTATCGTCGACCTTTTGATCCTCGGAAACAGCCGCCA
TGTCGCCGCCCTTGACGCCGCCCTGGCGCCCATGCTGGGATGCCGCGAAA
CGATCAAGCTCGGGCAGTCCTTCGACGCCGACCTCCGGCAGTTGCGGGCG
GGCTTTCCGGCCATTCGAGCGTTTCGGAAGGTGGAAGGAGTAGTGGAACT
GAACGCGCTGCATTTTCACTGCCATGGCGGCGGCGGCAGGGGGGCCGGTC
ACGGCACCTGGAAGCGGGACATGGTGGGGCTGGCGCCGTTGACGGCCATA
TATCTTGGGCGGCGGCTGAGCAAGGGGGAGCAAGTGAGCAGCTGGGGCGC
GCGGCCTCTCCGCGAGAAACAGCTCAGATACGCTTCGCTCGATGTATTAG
TGATGCTGCACCTTTACGACGCGATGCGATTGAAGATCGGCGAGTGGCAT
CTGCTCGAGAGCGCCCGC
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