mRNA_P-wetherbeei_contig16924.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16924.2.1
Unique NamemRNA_P-wetherbeei_contig16924.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Match: A0A835YPU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU5_9STRA)

HSP 1 Score: 230 bits (587), Expect = 8.560e-72
Identity = 105/131 (80.15%), Postives = 120/131 (91.60%), Query Frame = 1 
Query:    1 MSAAIEQRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTGQHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGANLFVGQLDPDVDEKLLYDTFSAFGFVVTQPKV 393
            MSAAIEQRNQDATCYCG +DE  TE++LWELM+QAGPVV+VHMPKDKVT  HQGYGF EFR+EEDA+YAIK++NMVKLFGKP+RVNKAS D+K+ DVGANLF+GQLDP+VDEKLLYDTFSAFGF+   PKV
Sbjct:    1 MSAAIEQRNQDATCYCGNLDEAATEELLWELMIQAGPVVNVHMPKDKVTNTHQGYGFVEFRSEEDAEYAIKILNMVKLFGKPLRVNKASSDRKAQDVGANLFIGQLDPEVDEKLLYDTFSAFGFITNTPKV 131
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BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Match: A0A7S2SH37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SH37_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.260e-71
Identity = 105/131 (80.15%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 MSAAIEQRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTGQHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGANLFVGQLDPDVDEKLLYDTFSAFGFVVTQPKV 393
            MSAAIEQRNQDATCYCG +D++V E++LWELM+QAGPVVS+HMPKDKVT  HQG+GF EFR+EEDADYAIK+MNMVKLF KPIRVNKASQD+K+MDVGANLF+G LD  VDEKLLYDTFSAFG +  QPKV
Sbjct:    1 MSAAIEQRNQDATCYCGNLDDQVEEELLWELMLQAGPVVSLHMPKDKVTNSHQGFGFVEFRSEEDADYAIKIMNMVKLFDKPIRVNKASQDRKTMDVGANLFIGNLDAQVDEKLLYDTFSAFGGLTDQPKV 131
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BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Match: A0A7S1XM10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM10_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.630e-70
Identity = 101/130 (77.69%), Postives = 118/130 (90.77%), Query Frame = 1 
Query:    4 SAAIEQRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTGQHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGANLFVGQLDPDVDEKLLYDTFSAFGFVVTQPKV 393
            SA +E RNQDATCYCG +DEKVTE+ILWELM+QAGP+ S++MPKDKV+G HQGYGF EFR  +DADYA KVMNMVK++GKPIRVNKASQD+KSM+VGANLF+G LDPDVDEKLLYDTFSAFG ++T PK+
Sbjct:    3 SANLEHRNQDATCYCGNLDEKVTEEILWELMLQAGPIQSIYMPKDKVSGNHQGYGFVEFRGTDDADYAHKVMNMVKVYGKPIRVNKASQDRKSMEVGANLFIGGLDPDVDEKLLYDTFSAFGGIITTPKI 132
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BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Match: A0A6H5KI11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI11_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 7.950e-70
Identity = 102/131 (77.86%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 MSAAIEQRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTGQHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGANLFVGQLDPDVDEKLLYDTFSAFGFVVTQPKV 393
            MSA+IEQRNQDATCY G +D  VTE +LWELM+QAGPV +VHMPKDK+TG HQG+GF EFR+E+DA+YAIK+MNMVKLFGKP+RVNKASQD+K+ DVGANLF+GQLDPDVDEK+LYDTFSAFGF+   PKV
Sbjct:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKV 131
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BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Match: D8LT41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT41_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 2.210e-68
Identity = 102/131 (77.86%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 MSAAIEQRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTGQHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGANLFVGQLDPDVDEKLLYDTFSAFGFVVTQPKV 393
            MSA+IEQRNQDATCY G +D  VTE +LWELM+QAGPV +VHMPKDK+TG HQG+GF EFR+E+DA+YAIK+MNMVKLFGKP+RVNKASQD+K+ DVGANLF+GQLDPDVDEK+LYDTFSAFGF+   PKV
Sbjct:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKV 131
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BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Match: A0A7S2APL4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APL4_9STRA)

HSP 1 Score: 230 bits (586), Expect = 2.770e-67
Identity = 109/131 (83.21%), Postives = 120/131 (91.60%), Query Frame = 1 
Query:    1 MSAAIEQRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTGQHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGANLFVGQLDPDVDEKLLYDTFSAFGFVVTQPKV 393
            MSAAIEQRNQDATCYCG +DE+V E++LWELM+QAGPVVS+HMPKDKVT  HQGYGF EFR+EEDADYAIKVMNMVKLFGKPIRVNKASQDKK++DVGANLF+G LD DVDEKLLYDTFSAFG +   PKV
Sbjct:    1 MSAAIEQRNQDATCYCGNLDEQVDEELLWELMLQAGPVVSLHMPKDKVTASHQGYGFVEFRSEEDADYAIKVMNMVKLFGKPIRVNKASQDKKTLDVGANLFIGNLDSDVDEKLLYDTFSAFGGITHTPKV 131
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BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Match: A0A5B6YLX9_DAVIN (Putative splicing factor 3B subunit 4 (Fragment) n=2 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YLX9_DAVIN)

HSP 1 Score: 211 bits (538), Expect = 3.600e-67
Identity = 97/125 (77.60%), Postives = 114/125 (91.20%), Query Frame = 1 
Query:   19 QRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTGQHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGANLFVGQLDPDVDEKLLYDTFSAFGFVVTQPKV 393
            +RNQDAT Y G +D ++TE++LWEL VQAGPVV+V++PKD+VT  HQGYGF EFR+EEDADYAIKV+NM+KL+GKPIRVNKASQDKKS+DVGANLFVG LDPDVDEKLLYDTFSAFG +VT PK+
Sbjct:   28 ERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKI 152
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BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Match: A0A7S3MGC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGC9_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.320e-66
Identity = 95/131 (72.52%), Postives = 117/131 (89.31%), Query Frame = 1 
Query:    1 MSAAIEQRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTGQHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGANLFVGQLDPDVDEKLLYDTFSAFGFVVTQPKV 393
            MSAAIEQRNQ+ATCY G +DEKV E++LWE M+Q GPVV+V MPKDKV+G++ GYGF E+R+E+DADYAIKV+NMVKL+ KP++VNKASQDKK+++VGANLF+G LDPDVDEKLLYDTFSAFG +   PK+
Sbjct:    1 MSAAIEQRNQEATCYVGNLDEKVNEELLWEFMLQVGPVVNVFMPKDKVSGKYLGYGFVEYRSEDDADYAIKVLNMVKLYFKPVKVNKASQDKKNIEVGANLFIGNLDPDVDEKLLYDTFSAFGGITQTPKI 131
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BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Match: A0A2H5NRF6_CITUN (Uncharacterized protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5NRF6_CITUN)

HSP 1 Score: 211 bits (538), Expect = 2.680e-66
Identity = 97/125 (77.60%), Postives = 114/125 (91.20%), Query Frame = 1 
Query:   19 QRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTGQHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGANLFVGQLDPDVDEKLLYDTFSAFGFVVTQPKV 393
            +RNQDAT Y G +D +VTE++LWEL VQAGPVV+V++PKD+VT  HQGYGF EFR+EEDADYAIKV+NM+KL+GKPIRVNKASQDKKS+DVGANLF+G LDPDVDEKLLYDTFSAFG +VT PK+
Sbjct:   20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
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BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Match: A0A5B6YN42_DAVIN (Putative splicing factor 3B subunit 4 n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YN42_DAVIN)

HSP 1 Score: 211 bits (538), Expect = 3.310e-66
Identity = 97/125 (77.60%), Postives = 114/125 (91.20%), Query Frame = 1 
Query:   19 QRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTGQHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGANLFVGQLDPDVDEKLLYDTFSAFGFVVTQPKV 393
            +RNQDAT Y G +D ++TE++LWEL VQAGPVV+V++PKD+VT  HQGYGF EFR+EEDADYAIKV+NM+KL+GKPIRVNKASQDKKS+DVGANLFVG LDPDVDEKLLYDTFSAFG +VT PK+
Sbjct:   20 ERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16924.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YPU5_9STRA8.560e-7280.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SH37_9STRA2.260e-7180.15Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1XM10_9STRA1.630e-7077.69Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6H5KI11_9PHAE7.950e-7077.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT41_ECTSI2.210e-6877.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2APL4_9STRA2.770e-6783.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5B6YLX9_DAVIN3.600e-6777.60Putative splicing factor 3B subunit 4 (Fragment) n... [more]
A0A7S3MGC9_9STRA1.320e-6672.52Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2H5NRF6_CITUN2.680e-6677.60Uncharacterized protein n=1 Tax=Citrus unshiu TaxI... [more]
A0A5B6YN42_DAVIN3.310e-6677.60Putative splicing factor 3B subunit 4 n=1 Tax=Davi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16924contigP-wetherbeei_contig16924:452..1320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LT41
Preferred nameSF3B4
PFAMsRRM_1
Model size417
Max annot lvl2759|Eukaryota
KEGG koko:K07951,ko:K12831
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032991,GO:0033120,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0045935,GO:0046483,GO:0048024,GO:0048026,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1903313,GO:1990904
Exons3
Evalue3.62e-69
EggNOG OGsKOG0131@1|root,KOG0131@2759|Eukaryota
DescriptionRNA splicing
Cds size417
COG categoryS
BRITEko00000,ko00001,ko00002,ko03036,ko03041,ko04031,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186102.2240655-CDS-P-wetherbeei_contig16924:451..5171683186102.2240655-CDS-P-wetherbeei_contig16924:451..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16924 452..517 +
1683186102.235828-CDS-P-wetherbeei_contig16924:641..7881683186102.235828-CDS-P-wetherbeei_contig16924:641..788Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16924 642..788 +
1683186102.2460375-CDS-P-wetherbeei_contig16924:1116..13201683186102.2460375-CDS-P-wetherbeei_contig16924:1116..1320Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16924 1117..1320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16924.2.1prot_P-wetherbeei_contig16924.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16924 452..1320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16924.2.1

>prot_P-wetherbeei_contig16924.2.1 ID=prot_P-wetherbeei_contig16924.2.1|Name=mRNA_P-wetherbeei_contig16924.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MSAAIEQRNQDATCYCGGMDEKVTEDILWELMVQAGPVVSVHMPKDKVTG
QHQGYGFTEFRTEEDADYAIKVMNMVKLFGKPIRVNKASQDKKSMDVGAN
LFVGQLDPDVDEKLLYDTFSAFGFVVTQPKVGYSQQRS*
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mRNA from alignment at P-wetherbeei_contig16924:452..1320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16924.2.1 ID=mRNA_P-wetherbeei_contig16924.2.1|Name=mRNA_P-wetherbeei_contig16924.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=869bp|location=Sequence derived from alignment at P-wetherbeei_contig16924:452..1320+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCAGCCATAGAGCAAAGAAACCAAGATGCCACCTGTTATTGCGG
TGGCATGGACGAGAAGGTGAGAAAATGCGCAAGCTTCTCCGAGTCCACTG
GATATTTCTCTGGGATCCATCGCAACGCAAAGTAACATTTTCGCCTTGAG
TAACAATCACCACCTATGCCCTCCGGCTCCTCGTTACCAGGTCACCGAGG
ACATCCTCTGGGAACTGATGGTGCAGGCCGGCCCCGTCGTTAGCGTACAC
ATGCCCAAGGACAAGGTGACGGGCCAGCATCAGGGCTATGGCTTCACTGA
GTTCCGAACGGAGGAGGACGCCGACTACGCCATCAAGGTTAGCCGCTTTC
CGTGCGATAATTATTACCCTCCGTTGCTCTAGCAGCAGCAACTATCCTGT
TGTACTTTGGGTTGCCGTTGGAAAGATATTTATTTGACTGGAAGAATCTT
GGAAACGGCTCCAAGGTGCTCAGCCTCTTTTCGTGCATTTTTCGTTGCCA
CCCTGTCCTCCATTCAGTCCAAAGTACCATTCGCGATTCCGAAAGTTGAC
TCTGATTTTTCTAACCGTTTCTACCAACGCCAACAAACTGCGATGGCATC
ATCGGCGCCGCCACCGGAGACCACAAACCGACCGCATTGCGTGCCAAACG
CCACACACACGACAGGTGATGAACATGGTGAAGCTGTTTGGCAAGCCGAT
CCGAGTCAACAAGGCGTCGCAGGACAAGAAGTCGATGGACGTCGGCGCCA
ACCTCTTTGTGGGGCAGCTTGACCCGGACGTCGACGAAAAGCTCCTTTAT
GACACCTTCAGCGCCTTCGGGTTCGTCGTCACGCAGCCCAAGGTCGGTTA
CAGTCAGCAACGGTCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16924:452..1320+

>mRNA_P-wetherbeei_contig16924.2.1 ID=mRNA_P-wetherbeei_contig16924.2.1|Name=mRNA_P-wetherbeei_contig16924.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig16924:452..1320+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCAGCCATAGAGCAAAGAAACCAAGATGCCACCTGTTATTGCGG
TGGCATGGACGAGAAGGTCACCGAGGACATCCTCTGGGAACTGATGGTGC
AGGCCGGCCCCGTCGTTAGCGTACACATGCCCAAGGACAAGGTGACGGGC
CAGCATCAGGGCTATGGCTTCACTGAGTTCCGAACGGAGGAGGACGCCGA
CTACGCCATCAAGGTGATGAACATGGTGAAGCTGTTTGGCAAGCCGATCC
GAGTCAACAAGGCGTCGCAGGACAAGAAGTCGATGGACGTCGGCGCCAAC
CTCTTTGTGGGGCAGCTTGACCCGGACGTCGACGAAAAGCTCCTTTATGA
CACCTTCAGCGCCTTCGGGTTCGTCGTCACGCAGCCCAAGGTCGGTTACA
GTCAGCAACGGTCATGA
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