mRNA_P-wetherbeei_contig1684.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1684.4.1
Unique NamemRNA_P-wetherbeei_contig1684.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Match: D7FN44_ECTSI (Outer row dynein assembly protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN44_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.150e-20
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    4 MDLTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLWLAG 162
            MDLTKA LKK CR++ LY++PSLND+LYLHYKGIR+I+NLEEYT LRVLWL G
Sbjct:    1 MDLTKAVLKKICRDSGLYSSPSLNDKLYLHYKGIRQIQNLEEYTGLRVLWLEG 53
[Close]
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Match: A0A485KC60_9STRA (Aste57867_4075 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KC60_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.000e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    4 MDLTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLWLAG 162
            M++ KA+L+K C++ DLYTTPS+NDRLYLHYKG RRIENLEEYT L+V+WL G
Sbjct:    1 MEMNKASLRKICKDLDLYTTPSINDRLYLHYKGFRRIENLEEYTNLKVIWLEG 53
[Close]
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Match: G4YN44_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YN44_PHYSP)

HSP 1 Score: 85.9 bits (211), Expect = 2.890e-18
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 MDLTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLWLAG 162
            M++ K  LKK CR+NDLY TPS+ND+LYLHYKG R I+NLEEYT L+VLWL G
Sbjct:    1 MEMEKKLLKKLCRDNDLYVTPSINDKLYLHYKGFRSIKNLEEYTGLKVLWLEG 53
[Close]
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Match: A0A6A5AAK2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AAK2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.070e-18
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    4 MDLTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLWLAG 162
            M++ KA L+K C++ DLY+TPS+NDRLYLHYKG RRIENLEEYT ++V+WL G
Sbjct:    1 MEMNKATLRKICKDLDLYSTPSINDRLYLHYKGFRRIENLEEYTNVKVIWLEG 53
[Close]
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Match: A0A0W8DBV3_PHYNI (Syntaxin-41 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DBV3_PHYNI)

HSP 1 Score: 85.1 bits (209), Expect = 3.620e-18
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 MDLTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLWLAG 162
            M++ K  LKK CR+NDLY TPS+ND+LYLHYKG R I+NLEEYT L+VLWL G
Sbjct:    1 MEMEKKLLKKLCRDNDLYVTPSINDKLYLHYKGFRCIKNLEEYTGLKVLWLEG 53
[Close]
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Match: H3G785_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G785_PHYRM)

HSP 1 Score: 82.4 bits (202), Expect = 5.270e-18
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   10 LTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLWLAG 162
            + K  LKK CR+NDLY TPS+ND+LYLHYKG R I+NL+EYT L+VLWL G
Sbjct:    1 MEKTLLKKLCRDNDLYVTPSINDKLYLHYKGFRSIKNLDEYTGLKVLWLEG 51
[Close]
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Match: A0A024TEQ5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEQ5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.350e-18
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    4 MDLTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLWLAG 162
            M++ KA L+K C++ DLY+TPS+NDRLYLHYKG RRIENLEEYT ++V+WL G
Sbjct:    1 MEMNKATLRKICKDLDLYSTPSINDRLYLHYKGFRRIENLEEYTNVKVIWLEG 53
[Close]
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Match: A0A2D4BT91_PYTIN (Fructose-bisphosphate aldolase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BT91_PYTIN)

HSP 1 Score: 85.9 bits (211), Expect = 5.360e-18
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 IMDLTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLWLAG 162
            ++++ KA LKK CRE+DLY TPS+ND+LYLHYKG R I+NLEEYT L+VLWL G
Sbjct:  379 MVEMEKALLKKLCREHDLYVTPSINDKLYLHYKGFRSIKNLEEYTGLKVLWLEG 432
[Close]
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Match: W2QY44_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QY44_PHYPN)

HSP 1 Score: 85.1 bits (209), Expect = 9.450e-18
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 MDLTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLWLAG 162
            M++ K  LKK CR+NDLY TPS+ND+LYLHYKG R I+NLEEYT L+VLWL G
Sbjct:    1 MEMEKKLLKKLCRDNDLYVTPSINDKLYLHYKGFRCIKNLEEYTGLKVLWLEG 53
[Close]
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Match: A0A1V9YZD4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZD4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.580e-18
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 IMDLTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLWLAG 162
            ++++ K +L+K C+E DLYTTP++NDRLYLHYKG RRI+NLE+YT L+VLWL G
Sbjct:    1 MLEMNKESLRKICKELDLYTTPNINDRLYLHYKGFRRIQNLEDYTELKVLWLEG 54
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1684.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN44_ECTSI4.150e-2077.36Outer row dynein assembly protein n=1 Tax=Ectocarp... [more]
A0A485KC60_9STRA4.000e-1971.70Aste57867_4075 protein n=1 Tax=Aphanomyces stellat... [more]
G4YN44_PHYSP2.890e-1869.81Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A5AAK2_9STRA3.070e-1867.92Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A0W8DBV3_PHYNI3.620e-1869.81Syntaxin-41 n=1 Tax=Phytophthora nicotianae TaxID=... [more]
H3G785_PHYRM5.270e-1868.63Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A024TEQ5_9STRA5.350e-1867.92Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A2D4BT91_PYTIN5.360e-1868.52Fructose-bisphosphate aldolase n=1 Tax=Pythium ins... [more]
W2QY44_PHYPN9.450e-1869.81Uncharacterized protein n=8 Tax=Phytophthora paras... [more]
A0A1V9YZD4_9STRA9.580e-1864.81Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1684contigP-wetherbeei_contig1684:6482..6778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FN44
Preferred nameODA7
PFAMsLRR_4,LRR_8,LRR_9
Model size204
Max annot lvl2759|Eukaryota
KEGG koko:K19750
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003341,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008104,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032879,GO:0032886,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0040012,GO:0040017,GO:0043933,GO:0044085,GO:0044297,GO:0044424,GO:0044464,GO:0044782,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051272,GO:0051641,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0120031,GO:0120036,GO:1902019,GO:2000145,GO:2000147,GO:2000155
Exons2
Evalue6.52e-21
EggNOG OGs2CMIN@1|root,2QQFE@2759|Eukaryota
Descriptiondynein complex binding
Cds size201
COG categoryS
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.3835135-UTR-P-wetherbeei_contig1684:6481..64841683186099.3835135-UTR-P-wetherbeei_contig1684:6481..6484Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1684 6482..6484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186099.3951552-CDS-P-wetherbeei_contig1684:6484..65801683186099.3951552-CDS-P-wetherbeei_contig1684:6484..6580Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 6485..6580 +
1683186099.4040701-CDS-P-wetherbeei_contig1684:6673..67781683186099.4040701-CDS-P-wetherbeei_contig1684:6673..6778Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1684 6674..6778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1684.4.1prot_P-wetherbeei_contig1684.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1684 6485..6778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1684.4.1

>prot_P-wetherbeei_contig1684.4.1 ID=prot_P-wetherbeei_contig1684.4.1|Name=mRNA_P-wetherbeei_contig1684.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MDLTKAALKKACRENDLYTTPSLNDRLYLHYKGIRRIENLEEYTALRVLW
LAGRCLARIAALHLQL*
back to top

mRNA from alignment at P-wetherbeei_contig1684:6482..6778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1684.4.1 ID=mRNA_P-wetherbeei_contig1684.4.1|Name=mRNA_P-wetherbeei_contig1684.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig1684:6482..6778+ (Phaeothamnion wetherbeei SAG_119_79)
ATCATGGATCTCACTAAGGCGGCCCTGAAGAAGGCGTGCAGGGAGAACGA
CTTGTATACGACGCCGTCTCTGAACGATAGGCTCTATCTTCACTACAAGG
TGAGAACGACTTTTGTGTCTTCTCCCTCTTTTCCCTCGCCTTCGACGGCA
TCTAATACCCTGCTTCGCCAGTCCCTTCTCCTGTGCACACAGGGCATCCG
GCGCATCGAGAATCTTGAGGAATACACGGCCCTGCGCGTCCTCTGGCTCG
CGGGGCGCTGCTTGGCAAGGATCGCCGCGCTGCACCTGCAGTTGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1684:6482..6778+

>mRNA_P-wetherbeei_contig1684.4.1 ID=mRNA_P-wetherbeei_contig1684.4.1|Name=mRNA_P-wetherbeei_contig1684.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig1684:6482..6778+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCTCACTAAGGCGGCCCTGAAGAAGGCGTGCAGGGAGAACGACTT
GTATACGACGCCGTCTCTGAACGATAGGCTCTATCTTCACTACAAGGGCA
TCCGGCGCATCGAGAATCTTGAGGAATACACGGCCCTGCGCGTCCTCTGG
CTCGCGGGGCGCTGCTTGGCAAGGATCGCCGCGCTGCACCTGCAGTTGTA
G
back to top