mRNA_P-wetherbeei_contig1682.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1682.1.1
Unique NamemRNA_P-wetherbeei_contig1682.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1682.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1682contigP-wetherbeei_contig1682:3246..3734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size308
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186098.670108-UTR-P-wetherbeei_contig1682:3245..32971683186098.670108-UTR-P-wetherbeei_contig1682:3245..3297Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1682 3246..3297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186098.6808536-CDS-P-wetherbeei_contig1682:3297..34961683186098.6808536-CDS-P-wetherbeei_contig1682:3297..3496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1682 3298..3496 +
1683186098.6909215-CDS-P-wetherbeei_contig1682:3678..37341683186098.6909215-CDS-P-wetherbeei_contig1682:3678..3734Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1682 3679..3734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1682.1.1prot_P-wetherbeei_contig1682.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1682 3298..3734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1682.1.1

>prot_P-wetherbeei_contig1682.1.1 ID=prot_P-wetherbeei_contig1682.1.1|Name=mRNA_P-wetherbeei_contig1682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MANASGKGSSGALYVQAAGIDKIAANLRSLSASNGGGRSLVTATTPRQKA
EVESGADFSSSYGNAQVTQDSVYGDRDGDHGGGIT
back to top

mRNA from alignment at P-wetherbeei_contig1682:3246..3734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1682.1.1 ID=mRNA_P-wetherbeei_contig1682.1.1|Name=mRNA_P-wetherbeei_contig1682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig1682:3246..3734+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCTGCCTTTCGGGCATTTTCCCACCTTTTCAGTCCTCTTAAGGAAGAC
GAATGGCGAATGCTAGTGGCAAGGGCTCTTCGGGCGCCCTTTACGTCCAG
GCGGCAGGAATCGACAAGATTGCGGCGAACCTGCGAAGCTTGAGCGCGAG
CAACGGAGGAGGCCGATCTCTGGTGACCGCAACTACACCACGCCAGAAAG
CCGAGGTTGAGAGCGGTGCCGACTTTTCGTCCAGCTATGGTAATGCGCAA
GGTATGTCTTTTCGCCCTGTGTTTGAGACTGCGACAACAATTCGGCCATG
CTGACTGACTGGAGCCAAAATAACCTCGATGGAACAAACACAGCCGTGAA
CTTTGCTGCTCCTCCGACCTGCTCCACTTTATCTCCATCGCTGCTGTCAC
CGCGCAAAGCCAAATTGGTCAATGGCAAGGCAGTCACGCAAGACAGTGTT
TATGGGGATCGCGATGGCGACCATGGCGGCGGCATCACA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1682:3246..3734+

>mRNA_P-wetherbeei_contig1682.1.1 ID=mRNA_P-wetherbeei_contig1682.1.1|Name=mRNA_P-wetherbeei_contig1682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig1682:3246..3734+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAATGCTAGTGGCAAGGGCTCTTCGGGCGCCCTTTACGTCCAGGC
GGCAGGAATCGACAAGATTGCGGCGAACCTGCGAAGCTTGAGCGCGAGCA
ACGGAGGAGGCCGATCTCTGGTGACCGCAACTACACCACGCCAGAAAGCC
GAGGTTGAGAGCGGTGCCGACTTTTCGTCCAGCTATGGTAATGCGCAAGT
CACGCAAGACAGTGTTTATGGGGATCGCGATGGCGACCATGGCGGCGGCA
TCACA
back to top