mRNA_P-wetherbeei_contig16684.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16684.1.1
Unique NamemRNA_P-wetherbeei_contig16684.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16684.1.1 vs. uniprot
Match: D8LIK5_ECTSI (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK5_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.970e-8
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   10 QVNKHKRHLDMGASKEFWRLLDEFMLVHKSYLM 108
            ++NKHKRHLD GA  EFWRLLDEFML++K  +M
Sbjct:  437 EINKHKRHLDKGALLEFWRLLDEFMLLNKPEMM 469
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BLAST of mRNA_P-wetherbeei_contig16684.1.1 vs. uniprot
Match: A0A835YIM7_9STRA (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM7_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.080e-5
Identity = 17/33 (51.52%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   13 VNKHKRHLDMGASKEFWRLLDEFMLVHKSYLMR 111
            +NKHKR+LD GAS   WR++D+F+ VHK ++++
Sbjct:  451 INKHKRYLDKGASLALWRMIDDFVHVHKPHMIK 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16684.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIK5_ECTSI3.970e-869.70RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A835YIM7_9STRA2.080e-551.52RNA pol II accessory factor, Cdc73 family protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16684contigP-wetherbeei_contig16684:836..949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LIK5
PFAMsCDC73_C,CDC73_N,Guanylate_cyc
Model size114
Max annot lvl2759|Eukaryota
KEGG koko:K15175
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0008023,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016591,GO:0016593,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034402,GO:0034622,GO:0034641,GO:0036211,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0140110,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue6.51e-09
EggNOG OGsCOG5157@1|root,KOG3786@2759|Eukaryota
Descriptionrecruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
Cds size114
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186094.231328-CDS-P-wetherbeei_contig16684:835..9491683186094.231328-CDS-P-wetherbeei_contig16684:835..949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16684 836..949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16684.1.1prot_P-wetherbeei_contig16684.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16684 836..949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16684.1.1

>prot_P-wetherbeei_contig16684.1.1 ID=prot_P-wetherbeei_contig16684.1.1|Name=mRNA_P-wetherbeei_contig16684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=38bp
TAWQVNKHKRHLDMGASKEFWRLLDEFMLVHKSYLMR*
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mRNA from alignment at P-wetherbeei_contig16684:836..949-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16684.1.1 ID=mRNA_P-wetherbeei_contig16684.1.1|Name=mRNA_P-wetherbeei_contig16684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=114bp|location=Sequence derived from alignment at P-wetherbeei_contig16684:836..949- (Phaeothamnion wetherbeei SAG_119_79)
ACGGCCTGGCAGGTGAACAAGCACAAGCGCCACCTGGACATGGGGGCTAG
CAAAGAGTTTTGGCGCCTCCTCGATGAGTTCATGCTCGTCCACAAGAGCT
ACCTCATGCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16684:836..949-

>mRNA_P-wetherbeei_contig16684.1.1 ID=mRNA_P-wetherbeei_contig16684.1.1|Name=mRNA_P-wetherbeei_contig16684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=114bp|location=Sequence derived from alignment at P-wetherbeei_contig16684:836..949- (Phaeothamnion wetherbeei SAG_119_79)
ACGGCCTGGCAGGTGAACAAGCACAAGCGCCACCTGGACATGGGGGCTAG
CAAAGAGTTTTGGCGCCTCCTCGATGAGTTCATGCTCGTCCACAAGAGCT
ACCTCATGCGATGA
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