mRNA_P-wetherbeei_contig1667.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1667.2.1
Unique NamemRNA_P-wetherbeei_contig1667.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Match: A0A835YGR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGR8_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.260e-36
Identity = 64/139 (46.04%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    1 MVAKTNQLVCRYWEILTDFTLSRFLTARNGNVELAAQLLLDHLEWRVSYKIDG---ILQEDFSDIASEKEFQWFGFDLTGHPCLLWRPSAHV-AAADVGRNVRHFCYLLEKGLREFSPAQTFTLVIDCRGASRKDLDWK 405
            M+     L+ ++   LTD TL RFLTARN +++ A  +LL HLEWRV+Y+++G   ++ EDFS      E  W+GFD  GHPCL+WRP  H  +  D    VR+FC+LLE G R+++PA  F +VIDCR    +++DWK
Sbjct:   44 MLEPKQPLIAQHRPYLTDRTLHRFLTARNNSLQAACDMLLQHLEWRVAYRVEGSPGLVDEDFSLFDELNELYWYGFDREGHPCLVWRPGVHSPSVTDPDNMVRYFCHLLEVGFRKYAPAHKFVMVIDCRDFGHRNMDWK 182          
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.550e-32
Identity = 64/133 (48.12%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   25 VCRYWEILTDFTLSRFLTARNGNVELAAQLLLDHLEWRVSYKIDGILQEDFSDIASEKEFQWFGFDLTGHPCLLWRPSAHVAAADVG------RNVRHFCYLLEKGLREFSPAQTFTLVIDCRGASRKDLDWK 405
            V RY     D  L RF+TARNGNV++A ++LL+HLEWR +YK+D IL ED S      EF W GFD  G PCL++R   H  +   G        VR++C LLE+G R+FSPA  F L++DCRGA    +D K
Sbjct:   43 VLRYRWFTDDRVLHRFITARNGNVDVALKMLLEHLEWRTTYKLDTILDEDLSGTGVSHEFYWSGFDRDGRPCLVFRACEHRKSDSDGGSPTVEEKVRYYCQLLERGFRDFSPAYKFCLILDCRGAGTNVMDRK 175          
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.500e-20
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   25 VCRYWEILTDFTLSRFLTARNGNVELAAQLLLDHLEWRVSYKIDGILQEDFSDIASEKEFQWFGFDLTGHPCLLWRPSAHVAAADVGRN--VRHFCYLLEKGLRE--FSPAQTFTLVIDCRGASRKDLDWKAS 411
            V RY     D  L RF+TARNGNV++A ++LL+HLEWR++YK+D IL ED S      EF W GFD  G PCL++R   H  +   G +  V    + +   + E  F   Q  T V+ C G     + WK S
Sbjct:   43 VLRYRWFTNDRVLHRFITARNGNVDIALKMLLEHLEWRITYKLDTILDEDLSGTGVSHEFYWSGFDRDGRPCLVFRACEHRKSDSDGASPTVEEKLFKVATPIIENNFPETQHATYVLPCNGMIM--MAWKGS 173          
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Match: A0A7S2GJ01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJ01_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.920e-20
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    7 AKTNQLVCRYWEILTDFTLSRFLTARNGNVELAAQLLLDHLEWRVSYKIDGILQEDFSDIASEKEFQWFGFDLTGHPCLLWRPSAH 264
            A   QL+  +W +LT+ TL RF+TA N +++ A   LL HLEWR ++ ++ +LQEDFSD+   +E  W GFDL GHP L+   + H
Sbjct:   18 APEGQLINAHWSLLTEDTLKRFITANNCDIDAAQSQLLSHLEWRDTFGLEQLLQEDFSDMDLRREVYWEGFDLAGHPVLVINAARH 103          
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Match: A0A7S0Y2Z7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y2Z7_HEMAN)

HSP 1 Score: 77.4 bits (189), Expect = 1.870e-14
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   31 RYWEILTD-FTLSRFLTARNGNVELAAQLLLDHLEWRVSYKIDGILQEDFSDIASEKEFQWFGFDLTGHPCLLWRPSAHVAAAD-VGRNVRHFCYLLEKGLREFS--PAQTFTLVID 369
            +Y +I+ +   + RF+++  GNVE A + L  HL+WR  Y++DGI+ EDFSD+ +  E  W G D  G P L W    H A      R VR F + +E G+R     P  TF +++D
Sbjct:   24 QYGDIIANQVAVERFISSSKGNVERAFKDLKAHLKWRHEYRVDGIVDEDFSDLKARNEVYWGGVDKRGVPTLTWILRKHDANNQRPERFVRFFIHQIETGMRASPNYPNTTFNIMVD 140          
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Match: A0A7S1E0E2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E0E2_HEMAN)

HSP 1 Score: 77.4 bits (189), Expect = 3.730e-14
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   31 RYWEILTD-FTLSRFLTARNGNVELAAQLLLDHLEWRVSYKIDGILQEDFSDIASEKEFQWFGFDLTGHPCLLWRPSAHVAAAD-VGRNVRHFCYLLEKGLREFS--PAQTFTLVID 369
            +Y +I+ +   + RF+++  GNVE A + L  HL+WR  Y++DGI+ EDFSD+ +  E  W G D  G P L W    H A      R VR F + +E G+R     P  TF +++D
Sbjct:   87 QYGDIIANQVAVERFISSSKGNVERAFKDLKAHLKWRHEYRVDGIVDEDFSDLKARNEVYWGGVDKRGVPTLTWILRKHDANNQRPERFVRFFIHQIETGMRASPNYPNTTFNIMVD 203          
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Match: A0A7S0Z4L5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z4L5_9CRYP)

HSP 1 Score: 72.4 bits (176), Expect = 4.320e-13
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   76 TARNGNVELAAQLLLDHLEWRVSYKIDGILQEDFSDIASEKEFQWFGFDLTGHPCLLWRPSAHVAAAD-VGRNVRHFCYLLEKGLREFS--PAQTFTLVIDCRGASRKDLD 399
            TA  GNV+ A + +  +L+WR  Y++DGI+ EDFSD+ + +E  W G D  G P L+W    H A      R VR F + +E G+R     P  TF +++D      ++ D
Sbjct:    1 TAVKGNVDRAVKDMKGYLKWRHEYRVDGIVDEDFSDLKARQEVYWGGVDKKGVPTLIWILRKHDANNQRPERFVRFFIHQIESGMRASPNYPNTTFNIMVDLEDVGLQNND 111          
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Match: A0A7S0N4T9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N4T9_9CRYP)

HSP 1 Score: 67.8 bits (164), Expect = 9.090e-11
Identity = 39/132 (29.55%), Postives = 64/132 (48.48%), Query Frame = 1
Query:    7 AKTNQLVCRYWEILTDFTLSRFLTARNGNVELAAQLLLDHLEWRVSYKIDGILQEDFSDIASEKEFQWFGFDLTGHPCLLWRPSAHVAAADVGRNVRHFCYLLEKGLR---EFSPAQTFTLVIDCRGASRKD 393
            A+   L C      +DFTL R+L ARN N++ A  +L + L+WR+ ++ D I      +     +    G DL G P L  RP+   +  D   N+RH  Y +++ +R   E +      +V+DC   S ++
Sbjct:   67 AEAQMLFC------SDFTLRRYLAARNWNLDKAKNMLRETLDWRIKFQADEISGASVFENGKTGKVFVSGLDLQGRPVLYMRPAMENSQMDHDGNLRHLVYNMDRAVRCMDEVNGVGKMVVVLDCHNYSARN 192          
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Match: A0A507FI98_9FUNG (CRAL-TRIO domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FI98_9FUNG)

HSP 1 Score: 65.5 bits (158), Expect = 9.500e-10
Identity = 40/123 (32.52%), Postives = 59/123 (47.97%), Query Frame = 1
Query:   40 EILTDFTLSRFLTARNGNVELAAQLLLDHLEWRVSYKIDGILQEDFSDIASEKEFQWFGFDLTGHPCLLWRPSAHVAAADVG---RNVRHFCYLLEKGLREFSPAQTFTLVIDCRGASRKDLD 399
            + L D  L +FL A + +V  A   L D L WR +YK+ GIL+EDF D+      Q+ G    G P L+   S H +  D     R VR+  YL+E+   E       T+++D    +   +D
Sbjct:   69 DCLNDLELLKFLKANDHHVGKALGALSDSLTWRTTYKLHGILEEDFQDLDDTGMAQFIGKTRVGVPILVLNNSRHRSPKDAAGRERMVRYGIYLIERAKSEGVLVDKLTVILDRFNTTTAQMD 191          
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Match: A0A1D2MFL9_ORCCI (SEC14-like protein 2 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MFL9_ORCCI)

HSP 1 Score: 56.6 bits (135), Expect = 8.800e-7
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   49 TDFTLSRFLTARNGNVELAAQLLLDHLEWRVSYKIDGILQEDFSDIASEKEFQWFGFDLTGHPCLL-----WRPSAHVAAADVGRNVRHFCYLLE 318
            TD  L R+L A+N N+  A  +L+++L+WR  Y +DGI  ED+SD+  +  +    +DL G P        W     +AA   G+ VR F Y+++
Sbjct:   66 TDIYLIRWLRAKNLNIRQAENMLMENLKWRKQYNLDGIHNEDWSDMFLDYPYTNDTYDLAGRPIGAFSLSDWDFRKAIAA---GKQVRLFRYMIK 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1667.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A835YGR8_9STRA4.260e-3646.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FK06_ECTSI2.550e-3248.12CRAL/TRIO domain containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAS6_9PHAE2.500e-2040.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GJ01_9STRA2.920e-2045.35Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0Y2Z7_HEMAN1.870e-1437.61Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1E0E2_HEMAN3.730e-1437.61Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0Z4L5_9CRYP4.320e-1336.04Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0N4T9_9CRYP9.090e-1129.55Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A507FI98_9FUNG9.500e-1032.52CRAL-TRIO domain-containing protein n=1 Tax=Chytri... [more]
A0A1D2MFL9_ORCCI8.800e-734.74SEC14-like protein 2 n=1 Tax=Orchesella cincta Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1667contigP-wetherbeei_contig1667:5963..6472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FK06
PFAMsCRAL_TRIO,VIT,VWA
Model size411
Max annot lvl2759|Eukaryota
KEGG koko:K15335,ko:K19625
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.17e-33
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-18_002930.1
EC2.1.1.203
Descriptionmacromolecule localization
Cds size411
COG categoryS
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186093.7865355-CDS-P-wetherbeei_contig1667:5962..60911683186093.7865355-CDS-P-wetherbeei_contig1667:5962..6091Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1667 5963..6091 +
1683186093.8008053-CDS-P-wetherbeei_contig1667:6190..64721683186093.8008053-CDS-P-wetherbeei_contig1667:6190..6472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1667 6191..6472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1667.2.1prot_P-wetherbeei_contig1667.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1667 5963..6472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1667.2.1

>prot_P-wetherbeei_contig1667.2.1 ID=prot_P-wetherbeei_contig1667.2.1|Name=mRNA_P-wetherbeei_contig1667.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MVAKTNQLVCRYWEILTDFTLSRFLTARNGNVELAAQLLLDHLEWRVSYK
IDGILQEDFSDIASEKEFQWFGFDLTGHPCLLWRPSAHVAAADVGRNVRH
FCYLLEKGLREFSPAQTFTLVIDCRGASRKDLDWKAS
back to top

mRNA from alignment at P-wetherbeei_contig1667:5963..6472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1667.2.1 ID=mRNA_P-wetherbeei_contig1667.2.1|Name=mRNA_P-wetherbeei_contig1667.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig1667:5963..6472+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGAAAACGAACCAACTCGTGTGCCGCTATTGGGAAATCCTCAC AGATTTCACGCTTTCGCGGTTCCTGACGGCAAGAAATGGCAATGTGGAGC TCGCCGCGCAGTTGCTGCTGGACCATCTGGTGCGTTTTTGCCTAGTTCAA GGAAGCCTTGGCTTTGCCCACACTCGATCGCTAAATTGATTAATCAAACG ACGCCTCATTCACCGTGAAAACGTACAGGAATGGCGCGTCTCATACAAAA TTGACGGCATTCTGCAAGAGGACTTCAGCGACATTGCGAGCGAGAAGGAG TTTCAGTGGTTTGGTTTCGACCTCACGGGGCATCCGTGCCTCCTTTGGCG CCCGAGCGCCCACGTCGCCGCCGCGGACGTCGGGCGGAATGTCCGACACT TTTGCTACCTCCTGGAGAAGGGCCTTCGGGAGTTTTCGCCCGCACAAACC TTTACACTCGTCATCGACTGCCGCGGCGCTTCGCGAAAGGACCTCGACTG GAAGGCGAGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1667:5963..6472+

>mRNA_P-wetherbeei_contig1667.2.1 ID=mRNA_P-wetherbeei_contig1667.2.1|Name=mRNA_P-wetherbeei_contig1667.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig1667:5963..6472+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGAAAACGAACCAACTCGTGTGCCGCTATTGGGAAATCCTCAC
AGATTTCACGCTTTCGCGGTTCCTGACGGCAAGAAATGGCAATGTGGAGC
TCGCCGCGCAGTTGCTGCTGGACCATCTGGAATGGCGCGTCTCATACAAA
ATTGACGGCATTCTGCAAGAGGACTTCAGCGACATTGCGAGCGAGAAGGA
GTTTCAGTGGTTTGGTTTCGACCTCACGGGGCATCCGTGCCTCCTTTGGC
GCCCGAGCGCCCACGTCGCCGCCGCGGACGTCGGGCGGAATGTCCGACAC
TTTTGCTACCTCCTGGAGAAGGGCCTTCGGGAGTTTTCGCCCGCACAAAC
CTTTACACTCGTCATCGACTGCCGCGGCGCTTCGCGAAAGGACCTCGACT
GGAAGGCGAGT
back to top