mRNA_P-wetherbeei_contig10504.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10504.2.1
Unique NamemRNA_P-wetherbeei_contig10504.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10504.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10504contigP-wetherbeei_contig10504:829..2027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1199
Hectar predicted targeting categoryother localisation
Exons1
Cds size978
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.842047-UTR-P-wetherbeei_contig10504:828..10491683185872.842047-UTR-P-wetherbeei_contig10504:828..1049Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10504 829..1049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.8540413-CDS-P-wetherbeei_contig10504:1049..20271683185872.8540413-CDS-P-wetherbeei_contig10504:1049..2027Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10504 1050..2027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10504.2.1prot_P-wetherbeei_contig10504.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10504 1050..2027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10504.2.1

>prot_P-wetherbeei_contig10504.2.1 ID=prot_P-wetherbeei_contig10504.2.1|Name=mRNA_P-wetherbeei_contig10504.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=326bp
MGGRDGKGRDRHRGKEKSRERDKDRYSSHRSKEKSSRTSSTDRDRSERDS
SKRHGSDKRGGYDRDESRRGSSRDGGRRSGSRSEKDDRRDCYAERSRARS
RERSRDRSRDRSRDRSRDRRSDRSRDRSRDRSRERSRERDRRERSKARNR
SYSRSRSVSRSRDAGRTSRGGSYGRSSRASPREEERPPKGREQERDGCGG
GGGGGGGGRSTRRRADSSDESPPRTSGKSSKEAAAAAAMTSPREDNESTA
GSSRPTRRCGRSRREGKPAINSDKRTPRRDDETPLPEVGTPVPDGESSGW
SSARPGPASAAPSPAAAGAERYASSV
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mRNA from alignment at P-wetherbeei_contig10504:829..2027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10504.2.1 ID=mRNA_P-wetherbeei_contig10504.2.1|Name=mRNA_P-wetherbeei_contig10504.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1199bp|location=Sequence derived from alignment at P-wetherbeei_contig10504:829..2027+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCACGGGTCCTCGCAGGGCGCTTTGACTTTCCTTGTGCATCCTAAACC
GTCCGGTCCCGCGCAAAGTTAAGAAACAGGAAAACAGGACAGAACGTAGA
GGGCACACCACGCACGCCACCATAAACTACATACGAGCTGGCAGCGTTAC
AGGAGACGGCTGTCTCTGCAGCCGCAATCGACGCCTGATACTTCGTTTTT
CCTTGACGAGGGAAGACGGGGATGGGCGGGCGCGATGGCAAGGGCAGAGA
CCGGCATCGGGGCAAGGAAAAGTCGCGAGAACGTGACAAAGACCGGTATA
GCAGCCACCGGAGCAAGGAGAAGTCGAGCCGCACGTCAAGCACAGACCGC
GATCGTAGCGAAAGAGATTCTTCAAAGCGCCATGGTAGCGACAAGCGCGG
CGGGTATGACCGTGACGAGTCTCGCCGGGGTTCGTCGCGAGATGGCGGGC
GTAGGAGCGGCAGCCGCTCCGAGAAAGACGACAGGAGAGATTGCTATGCC
GAACGCAGTCGGGCCCGGAGCCGCGAACGCAGCCGCGACCGGAGCCGTGA
CCGCAGCCGTGACCGCAGCCGCGACCGGAGAAGCGACCGGAGCCGCGACC
GGAGCCGCGACCGAAGCCGTGAACGCAGCCGCGAACGGGACCGCAGAGAA
CGCAGCAAGGCACGGAACCGCAGCTATAGCCGGAGCCGCAGCGTGAGCCG
CAGCCGGGACGCCGGTCGCACCAGCCGGGGAGGGAGCTACGGCCGCAGTT
CGCGAGCGTCGCCCCGTGAGGAAGAGCGCCCGCCGAAGGGCCGCGAGCAG
GAGCGCGATGGTTGCGGCGGAGGCGGAGGAGGCGGCGGCGGCGGGCGCAG
CACGCGGCGACGGGCGGACAGCAGCGATGAGAGTCCTCCCAGGACGTCCG
GCAAGAGCAGCAAAGAAGCCGCGGCGGCAGCGGCCATGACGTCGCCGCGA
GAGGACAATGAATCTACTGCCGGCAGCAGCCGGCCCACGCGGCGCTGCGG
CAGGTCGCGGCGCGAGGGCAAGCCAGCGATCAACAGCGACAAGCGGACGC
CGCGCCGCGACGATGAAACGCCGTTGCCGGAAGTAGGAACGCCGGTCCCG
GACGGCGAGTCTTCAGGATGGTCGTCGGCTCGGCCGGGCCCCGCGAGCGC
CGCGCCGTCGCCCGCCGCCGCCGGAGCGGAGCGCTACGCCTCGTCGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10504:829..2027+

>mRNA_P-wetherbeei_contig10504.2.1 ID=mRNA_P-wetherbeei_contig10504.2.1|Name=mRNA_P-wetherbeei_contig10504.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=978bp|location=Sequence derived from alignment at P-wetherbeei_contig10504:829..2027+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGGGCGCGATGGCAAGGGCAGAGACCGGCATCGGGGCAAGGAAAA
GTCGCGAGAACGTGACAAAGACCGGTATAGCAGCCACCGGAGCAAGGAGA
AGTCGAGCCGCACGTCAAGCACAGACCGCGATCGTAGCGAAAGAGATTCT
TCAAAGCGCCATGGTAGCGACAAGCGCGGCGGGTATGACCGTGACGAGTC
TCGCCGGGGTTCGTCGCGAGATGGCGGGCGTAGGAGCGGCAGCCGCTCCG
AGAAAGACGACAGGAGAGATTGCTATGCCGAACGCAGTCGGGCCCGGAGC
CGCGAACGCAGCCGCGACCGGAGCCGTGACCGCAGCCGTGACCGCAGCCG
CGACCGGAGAAGCGACCGGAGCCGCGACCGGAGCCGCGACCGAAGCCGTG
AACGCAGCCGCGAACGGGACCGCAGAGAACGCAGCAAGGCACGGAACCGC
AGCTATAGCCGGAGCCGCAGCGTGAGCCGCAGCCGGGACGCCGGTCGCAC
CAGCCGGGGAGGGAGCTACGGCCGCAGTTCGCGAGCGTCGCCCCGTGAGG
AAGAGCGCCCGCCGAAGGGCCGCGAGCAGGAGCGCGATGGTTGCGGCGGA
GGCGGAGGAGGCGGCGGCGGCGGGCGCAGCACGCGGCGACGGGCGGACAG
CAGCGATGAGAGTCCTCCCAGGACGTCCGGCAAGAGCAGCAAAGAAGCCG
CGGCGGCAGCGGCCATGACGTCGCCGCGAGAGGACAATGAATCTACTGCC
GGCAGCAGCCGGCCCACGCGGCGCTGCGGCAGGTCGCGGCGCGAGGGCAA
GCCAGCGATCAACAGCGACAAGCGGACGCCGCGCCGCGACGATGAAACGC
CGTTGCCGGAAGTAGGAACGCCGGTCCCGGACGGCGAGTCTTCAGGATGG
TCGTCGGCTCGGCCGGGCCCCGCGAGCGCCGCGCCGTCGCCCGCCGCCGC
CGGAGCGGAGCGCTACGCCTCGTCGGTC
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