mRNA_P-wetherbeei_contig16649.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16649.1.1
Unique NamemRNA_P-wetherbeei_contig16649.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16649.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16649contigP-wetherbeei_contig16649:426..1139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1279009.ADICEAN_00063
PFAMsPKD,SLH,VCBS,fn3
Model size714
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.01e-17
EggNOG OGsCOG4733@1|root,COG4733@2|Bacteria
Descriptioncellulase activity
Cds size714
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186093.0240238-CDS-P-wetherbeei_contig16649:425..11391683186093.0240238-CDS-P-wetherbeei_contig16649:425..1139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16649 426..1139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16649.1.1prot_P-wetherbeei_contig16649.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16649 426..1139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16649.1.1

>prot_P-wetherbeei_contig16649.1.1 ID=prot_P-wetherbeei_contig16649.1.1|Name=mRNA_P-wetherbeei_contig16649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp
ACSDDDGGKDGGGDETAPTITVASPSAGTIGVSDAILAVNSTITDNEELA
SVKVTIGNGDTEVYTETVTTFSNPMSFTYNKNITLPDDAPLGEHTLTILA
KDKDGNEKTSTVALTVLPALEEGKTTVLITSVPEVTGDDAFYAVGQFQGW
NPAIMDNPVTKYTDSEGADSYYILLPNDAGADQGFKFVRGNDWPFGEKDP
DGKEIDNRKFEAGAQFVEVEIAGWRDYNPELVNNSGGT
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mRNA from alignment at P-wetherbeei_contig16649:426..1139-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16649.1.1 ID=mRNA_P-wetherbeei_contig16649.1.1|Name=mRNA_P-wetherbeei_contig16649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig16649:426..1139- (Phaeothamnion wetherbeei SAG_119_79)
GCGTGTAGCGATGATGATGGCGGGAAAGACGGTGGTGGCGATGAAACAGC
CCCAACAATTACAGTTGCTTCACCTTCTGCAGGTACAATTGGCGTTTCAG
ATGCAATTTTGGCAGTAAACTCAACCATTACAGATAATGAGGAGCTTGCT
TCTGTAAAAGTAACTATCGGAAACGGTGACACTGAGGTTTACACTGAAAC
TGTAACTACGTTCAGCAATCCAATGAGCTTTACGTACAATAAGAACATTA
CCCTGCCGGACGATGCACCCCTTGGTGAGCATACACTCACAATTCTTGCA
AAAGATAAAGATGGTAACGAAAAGACTTCAACAGTTGCATTAACCGTGCT
TCCAGCGTTGGAAGAAGGAAAAACTACGGTATTGATTACTTCTGTACCGG
AAGTAACTGGTGACGATGCATTTTATGCTGTTGGCCAGTTTCAAGGTTGG
AATCCAGCAATTATGGATAATCCAGTAACTAAATACACTGATTCTGAAGG
TGCTGACAGTTATTACATCCTACTACCAAATGATGCAGGTGCGGACCAAG
GCTTTAAATTCGTTCGCGGAAATGACTGGCCTTTCGGAGAGAAAGACCCT
GATGGAAAAGAAATTGATAATCGCAAATTCGAAGCTGGGGCTCAGTTTGT
GGAGGTTGAAATTGCAGGCTGGAGAGATTATAATCCTGAACTTGTAAATA
ATTCAGGTGGTACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16649:426..1139-

>mRNA_P-wetherbeei_contig16649.1.1 ID=mRNA_P-wetherbeei_contig16649.1.1|Name=mRNA_P-wetherbeei_contig16649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig16649:426..1139- (Phaeothamnion wetherbeei SAG_119_79)
GCGTGTAGCGATGATGATGGCGGGAAAGACGGTGGTGGCGATGAAACAGC
CCCAACAATTACAGTTGCTTCACCTTCTGCAGGTACAATTGGCGTTTCAG
ATGCAATTTTGGCAGTAAACTCAACCATTACAGATAATGAGGAGCTTGCT
TCTGTAAAAGTAACTATCGGAAACGGTGACACTGAGGTTTACACTGAAAC
TGTAACTACGTTCAGCAATCCAATGAGCTTTACGTACAATAAGAACATTA
CCCTGCCGGACGATGCACCCCTTGGTGAGCATACACTCACAATTCTTGCA
AAAGATAAAGATGGTAACGAAAAGACTTCAACAGTTGCATTAACCGTGCT
TCCAGCGTTGGAAGAAGGAAAAACTACGGTATTGATTACTTCTGTACCGG
AAGTAACTGGTGACGATGCATTTTATGCTGTTGGCCAGTTTCAAGGTTGG
AATCCAGCAATTATGGATAATCCAGTAACTAAATACACTGATTCTGAAGG
TGCTGACAGTTATTACATCCTACTACCAAATGATGCAGGTGCGGACCAAG
GCTTTAAATTCGTTCGCGGAAATGACTGGCCTTTCGGAGAGAAAGACCCT
GATGGAAAAGAAATTGATAATCGCAAATTCGAAGCTGGGGCTCAGTTTGT
GGAGGTTGAAATTGCAGGCTGGAGAGATTATAATCCTGAACTTGTAAATA
ATTCAGGTGGTACT
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