mRNA_P-wetherbeei_contig16647.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16647.1.1
Unique NamemRNA_P-wetherbeei_contig16647.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16647.1.1 vs. uniprot
Match: T0QUY7_SAPDV (Kinesin-like protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QUY7_SAPDV)

HSP 1 Score: 53.1 bits (126), Expect = 1.500e-5
Identity = 42/116 (36.21%), Postives = 56/116 (48.28%), Query Frame = 2 
Query:   53 AEMLAETVRVYCRLRPSLPEHKEGSGPNRRNHATLITEVA----GAGADVSSC-IEAWDEKGGFTYRRVPGEPSKTFRFTGFLPPTATQDAVFNAAARRVVDGVAVGLNGTILAYG 385
            A ++ E V+VYCRLRP L      +     + +T +T  A    G GA V+    E+         +     P K F F G     ATQDAV+ A AR +V  V +G N TI+AYG
Sbjct:    2 AGVVCERVKVYCRLRPQLV-----AAAPEDDGSTFVTGGASHCVGGGAAVTIAGTESHPLPKRLVLKDTNASP-KDFEFDGCFRQDATQDAVYAAVARDLVQSVLLGYNATIMAYG 111
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BLAST of mRNA_P-wetherbeei_contig16647.1.1 vs. uniprot
Match: A0A024UDT1_9STRA (Kinesin-like protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UDT1_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.810e-5
Identity = 36/113 (31.86%), Postives = 54/113 (47.79%), Query Frame = 2 
Query:   47 AKAEMLAETVRVYCRLRPSLPEHKEGSGPNRRNHATLITEVAGAGADVSSCIEAWDEKGGFTYRRVPGEPSKTFRFTGFLPPTATQDAVFNAAARRVVDGVAVGLNGTILAYG 385
            A A  LAE V VYCR+RP +   +    P     +T +T  + +   V  C+++       +        +K F F       A+Q+AV+NA A+ +V  V  G N TI+AYG
Sbjct:    3 ATAPALAERVHVYCRIRPYVASAR----PEADGDSTFVTGTSSSTRRV--CVQSTST----STLSFQDSDTKEFGFDQCFADDASQEAVYNAVAKDLVQSVLDGYNATIMAYG 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16647.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
T0QUY7_SAPDV1.500e-536.21Kinesin-like protein n=2 Tax=Saprolegnia TaxID=476... [more]
A0A024UDT1_9STRA3.810e-531.86Kinesin-like protein n=2 Tax=Aphanomyces invadans ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16647contigP-wetherbeei_contig16647:289..675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size387
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.9956152-CDS-P-wetherbeei_contig16647:288..6751683186092.9956152-CDS-P-wetherbeei_contig16647:288..675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16647 289..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16647.1.1prot_P-wetherbeei_contig16647.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16647 289..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16647.1.1

>prot_P-wetherbeei_contig16647.1.1 ID=prot_P-wetherbeei_contig16647.1.1|Name=mRNA_P-wetherbeei_contig16647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
RQTGVTDGFPKDTCLCKSRNAGRNRPRLLPATAFPPGAQRGQRPEQEEPR
NTDNGSGRRWRRRFVLHRSMGRKGWLHLPPRPRRALQDLSLHGIFASYSD
AGRCLQCSGAPRRRRGCGRTQWHHSSIWA
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mRNA from alignment at P-wetherbeei_contig16647:289..675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16647.1.1 ID=mRNA_P-wetherbeei_contig16647.1.1|Name=mRNA_P-wetherbeei_contig16647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig16647:289..675+ (Phaeothamnion wetherbeei SAG_119_79)
CGACAGACAGGTGTAACTGACGGCTTCCCAAAAGATACTTGCCTTTGCAA
AAGCAGAAATGCTGGCAGAAACCGTCCGCGTTTACTGCCGGCTACGGCCT
TCCCTCCCGGAGCACAAAGAGGGCAGCGGCCCGAACAGGAGGAACCACGC
AACACTGATAACGGAAGTGGCCGGCGCTGGCGCCGACGTTTCGTCCTGCA
TCGAAGCATGGGACGAAAAGGGTGGCTTCACCTACCGCCGCGTCCCCGGA
GAGCCCTCCAAGACCTTTCGCTTCACGGGATTTTTGCCTCCTACAGCGAC
GCAGGACGCTGTCTTCAATGCAGCGGCGCGCCGCGTCGTCGACGGGGTTG
CGGTAGGACTCAATGGCACCATTCTAGCATATGGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16647:289..675+

>mRNA_P-wetherbeei_contig16647.1.1 ID=mRNA_P-wetherbeei_contig16647.1.1|Name=mRNA_P-wetherbeei_contig16647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig16647:289..675+ (Phaeothamnion wetherbeei SAG_119_79)
CGACAGACAGGTGTAACTGACGGCTTCCCAAAAGATACTTGCCTTTGCAA
AAGCAGAAATGCTGGCAGAAACCGTCCGCGTTTACTGCCGGCTACGGCCT
TCCCTCCCGGAGCACAAAGAGGGCAGCGGCCCGAACAGGAGGAACCACGC
AACACTGATAACGGAAGTGGCCGGCGCTGGCGCCGACGTTTCGTCCTGCA
TCGAAGCATGGGACGAAAAGGGTGGCTTCACCTACCGCCGCGTCCCCGGA
GAGCCCTCCAAGACCTTTCGCTTCACGGGATTTTTGCCTCCTACAGCGAC
GCAGGACGCTGTCTTCAATGCAGCGGCGCGCCGCGTCGTCGACGGGGTTG
CGGTAGGACTCAATGGCACCATTCTAGCATATGGGCA
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