mRNA_P-wetherbeei_contig1659.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1659.3.1
Unique NamemRNA_P-wetherbeei_contig1659.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1659.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1659contigP-wetherbeei_contig1659:5400..6368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size845
Hectar predicted targeting categoryother localisation
Exons2
Cds size789
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.4776661-CDS-P-wetherbeei_contig1659:5399..60381683186091.4776661-CDS-P-wetherbeei_contig1659:5399..6038Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1659 5400..6038 -
1683186091.4974775-CDS-P-wetherbeei_contig1659:6162..63121683186091.4974775-CDS-P-wetherbeei_contig1659:6162..6312Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1659 6163..6312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.5052292-UTR-P-wetherbeei_contig1659:6312..63681683186091.5052292-UTR-P-wetherbeei_contig1659:6312..6368Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1659 6313..6368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1659.3.1prot_P-wetherbeei_contig1659.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1659 5400..6312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1659.3.1

>prot_P-wetherbeei_contig1659.3.1 ID=prot_P-wetherbeei_contig1659.3.1|Name=mRNA_P-wetherbeei_contig1659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=263bp
MMPSLLELSYKELQGLAKKHNLRANKKKDDLLRDLQHAYDAEKASSDAAR
VIEATAPVPKAAKRQASAASARAEGIAATSATATAAGDAAARADARASQL
QSRRASASTPFQSVSHATPIRVTTRRCGKSAAAAAAAATAAAATNGDDSS
GKPPAVDEDAAIELQTARPVSKVPESAKMPLPRTTESNAKTATMSAAAAT
AAAAPASACAPVAEPSTSFMRDRRRGVAATTATGATRTEEDPMTTEDDRS
DEDDSACDDGRSD
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mRNA from alignment at P-wetherbeei_contig1659:5400..6368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1659.3.1 ID=mRNA_P-wetherbeei_contig1659.3.1|Name=mRNA_P-wetherbeei_contig1659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig1659:5400..6368- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGCGCCGCGACGTTGAACAGGCCCTCAAAATCCAGCCGCAGGACAAA
TAGGGAATGATGCCGTCGCTTTTGGAGCTCAGCTACAAGGAACTGCAAGG
CTTGGCGAAAAAGCACAACCTGCGCGCCAACAAGAAGAAAGACGACCTGT
TGAGGGACCTCCAGCATGCCTACGACGCGGAGAAAGCTTCGTCTGATGCG
GCTCGGGTGAGAACTTGAGAACCGTGAGCGCACATTTTTTCCGAAGCCGT
CCGCAACAGACTTCACCGATAATGCCTGCCTCCCACATGAAAACTTCGCC
GTCTTCTCTCTTTTGCCTCGCTTTTCAAAGGTCATTGAAGCGACTGCGCC
TGTCCCTAAGGCCGCGAAACGCCAGGCCAGCGCGGCTTCTGCACGCGCGG
AGGGCATTGCGGCTACGTCTGCTACAGCAACGGCGGCCGGCGACGCCGCA
GCGAGAGCTGACGCGCGCGCCAGCCAACTGCAGAGCCGGCGCGCCTCTGC
CAGCACGCCTTTTCAAAGCGTCTCGCACGCCACACCGATCAGAGTTACAA
CCCGGCGATGCGGGAAGTCAGCGGCGGCAGCAGCGGCGGCGGCAACGGCG
GCGGCGGCGACCAATGGCGATGACAGCAGCGGCAAGCCACCAGCCGTCGA
CGAAGATGCCGCCATAGAGCTGCAGACGGCCCGACCAGTCAGCAAGGTAC
CAGAGTCCGCCAAGATGCCTTTGCCCCGCACCACCGAATCCAATGCCAAG
ACCGCCACCATGAGCGCCGCCGCCGCCACGGCCGCTGCAGCTCCGGCCTC
CGCCTGCGCCCCGGTGGCGGAGCCTTCTACGTCGTTCATGCGCGACCGCC
GTCGTGGCGTTGCCGCCACTACAGCCACCGGCGCCACCCGCACTGAGGAG
GACCCCATGACGACGGAGGACGACAGATCGGACGAGGACGACAGCGCCTG
CGACGACGGCCGAAGTGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1659:5400..6368-

>mRNA_P-wetherbeei_contig1659.3.1 ID=mRNA_P-wetherbeei_contig1659.3.1|Name=mRNA_P-wetherbeei_contig1659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig1659:5400..6368- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCCGTCGCTTTTGGAGCTCAGCTACAAGGAACTGCAAGGCTTGGC
GAAAAAGCACAACCTGCGCGCCAACAAGAAGAAAGACGACCTGTTGAGGG
ACCTCCAGCATGCCTACGACGCGGAGAAAGCTTCGTCTGATGCGGCTCGG
GTCATTGAAGCGACTGCGCCTGTCCCTAAGGCCGCGAAACGCCAGGCCAG
CGCGGCTTCTGCACGCGCGGAGGGCATTGCGGCTACGTCTGCTACAGCAA
CGGCGGCCGGCGACGCCGCAGCGAGAGCTGACGCGCGCGCCAGCCAACTG
CAGAGCCGGCGCGCCTCTGCCAGCACGCCTTTTCAAAGCGTCTCGCACGC
CACACCGATCAGAGTTACAACCCGGCGATGCGGGAAGTCAGCGGCGGCAG
CAGCGGCGGCGGCAACGGCGGCGGCGGCGACCAATGGCGATGACAGCAGC
GGCAAGCCACCAGCCGTCGACGAAGATGCCGCCATAGAGCTGCAGACGGC
CCGACCAGTCAGCAAGGTACCAGAGTCCGCCAAGATGCCTTTGCCCCGCA
CCACCGAATCCAATGCCAAGACCGCCACCATGAGCGCCGCCGCCGCCACG
GCCGCTGCAGCTCCGGCCTCCGCCTGCGCCCCGGTGGCGGAGCCTTCTAC
GTCGTTCATGCGCGACCGCCGTCGTGGCGTTGCCGCCACTACAGCCACCG
GCGCCACCCGCACTGAGGAGGACCCCATGACGACGGAGGACGACAGATCG
GACGAGGACGACAGCGCCTGCGACGACGGCCGAAGTGAC
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