mRNA_P-wetherbeei_contig1657.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1657.3.1
Unique NamemRNA_P-wetherbeei_contig1657.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1657.3.1 vs. uniprot
Match: A0A7S3XJQ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJQ2_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 5.860e-16
Identity = 37/76 (48.68%), Postives = 57/76 (75.00%), Query Frame = 2
Query:    2 HHSLLGRFLLEMYVPTEQVGIIVGKAGAMVQNISRETDTK-IVTPRSEGLLWSKVLIKGDPTGTFEAFERIEGMVD 226
            H S+ G+F L ++VP E+ G+I+GK GAM+ +I RE++TK I+ P+ E  LWS ++IKGDP+GTF A++ I  +V+
Sbjct:   38 HPSIRGKFTLSIWVPAEKCGMIIGKRGAMITHIQRESNTKLIIPPQIEESLWSPIVIKGDPSGTFGAYKLISDLVE 113          
BLAST of mRNA_P-wetherbeei_contig1657.3.1 vs. uniprot
Match: A0A6H5L596_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L596_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.800e-9
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 2
Query:    2 HHSLLGRFLLEMYVPTEQVGIIVGKAGAMVQNIS-RETDTKIVTPRSEGLLWSKVLIKGDPTGTFEAFERIEGMVDGEV 235
            H  L GRF L +++P EQ  +++GK G + Q +  +  D  +  P   GLLWS V+I GDPT +F+A++ I  +V+G +
Sbjct:   14 HPHLKGRFTLRIWIPVEQTAMVIGKCGQIKQELGVKSIDCPVAPP---GLLWSPVVITGDPTSSFKAYKAIAEIVEGAI 89          
BLAST of mRNA_P-wetherbeei_contig1657.3.1 vs. uniprot
Match: A0A7S1UIG6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIG6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-8
Identity = 28/67 (41.79%), Postives = 47/67 (70.15%), Query Frame = 2
Query:   29 LEMYVPTEQVGIIVGKAGAMVQNISRETDTKI-VTPRSEGLLWSKVLIKGDPTGTFEAFERIEGMVD 226
            L ++VP EQVG+I+GK GAMV +I R++ T+I V P+S+   W+ + +KG   G F A++ ++ +V+
Sbjct:   38 LSLWVPFEQVGLIIGKKGAMVNHIQRDSRTQITVPPQSKPSAWAPITVKGSGLGAFAAYQMLKALVE 104          
BLAST of mRNA_P-wetherbeei_contig1657.3.1 vs. uniprot
Match: A0A7R9U8S6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8S6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.090e-7
Identity = 25/67 (37.31%), Postives = 46/67 (68.66%), Query Frame = 2
Query:   29 LEMYVPTEQVGIIVGKAGAMVQNISRETDTKI-VTPRSEGLLWSKVLIKGDPTGTFEAFERIEGMVD 226
            L ++VP EQVG+I+G+ G MV +I R++ T+I + P+S+   W+ + ++G   G F A++ ++ +VD
Sbjct:   55 LSLWVPNEQVGMIIGRKGGMVTHIQRDSGTQITIPPQSKPSAWAPIAVRGSAAGAFAAYQMLKALVD 121          
BLAST of mRNA_P-wetherbeei_contig1657.3.1 vs. uniprot
Match: A0A8J2S6H3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6H3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.190e-6
Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 2
Query:   23 FLLEMYVPTEQVGIIVGKAGAMVQNISRETDTKI-VTPRSEGLLWSKVLIKGDPTGTFEAFERIEGMVDGEVWACGCTCFHLPQPAEEVGCHGFSLLVAVATPVSVWKLGTSNAILRSHIGSLKHAIAPTIP 415
            F L +++P EQVGI++G++G  +  I   T +++ V P  +   W+ V I+G P G F A +++  +VD EV  C    FHL       G  G +LL    +       G SN  L +   S  H +   IP
Sbjct:  574 FKLTLWIPVEQVGIVIGRSGQTINKIQGGTSSRLNVVPDQDASAWAPVYIRGAPDGVFAAAQQVVELVD-EVDDCVAE-FHL-------GGRGRTLLRDENS-------GPSNLTLETKKVSADHKVRILIP 689          
BLAST of mRNA_P-wetherbeei_contig1657.3.1 vs. uniprot
Match: F0Y7C5_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7C5_AURAN)

HSP 1 Score: 55.1 bits (131), Expect = 8.260e-6
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 2
Query:   23 FLLEMYVPTEQVGIIVGKAGAMVQNISRETDTKI-VTPRSEGLLWSKVLIKGDPTGTFEAFERIEGMVD 226
            F L +++P EQVGI++G++GA +  I   + +++ V P  E   W+ V IKG P G F A + +  +V+
Sbjct:    6 FKLTIWIPVEQVGIVIGRSGATISRIQSSSSSRLNVVPDPEASPWAPVYIKGAPDGVFMAAKLVSDLVE 74          
BLAST of mRNA_P-wetherbeei_contig1657.3.1 vs. uniprot
Match: A0A7S2GUZ9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUZ9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.810e-6
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 2
Query:   20 RFLLEMYVPTEQVGIIVGKAGAMVQNISRETDTKI-VTPRS---EGLLWSKVLIKGDPTGTFEAFERIEGMVD 226
            RF + ++VP EQVG+++GK G M+ +I RET+T I + P++   E  LW+ V I+G P     A   +  +VD
Sbjct:   51 RFSITLWVPDEQVGMVIGKGGNMIGHIRRETNTTIQILPQTDDGEKSLWAPVSIRGHPNSARAAISMVVKLVD 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1657.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S3XJQ2_HETAK5.860e-1648.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5L596_9PHAE1.800e-939.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1UIG6_9STRA1.140e-841.79Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7R9U8S6_9STRA1.090e-737.31Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8J2S6H3_9STRA5.190e-631.82Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0Y7C5_AURAN8.260e-636.23Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A7S2GUZ9_9STRA8.810e-639.73Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1657contigP-wetherbeei_contig1657:2856..3390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size535
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186090.8128812-UTR-P-wetherbeei_contig1657:2855..28891683186090.8128812-UTR-P-wetherbeei_contig1657:2855..2889Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1657 2856..2889 +
1683186090.8314211-UTR-P-wetherbeei_contig1657:3303..33901683186090.8314211-UTR-P-wetherbeei_contig1657:3303..3390Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1657 3304..3390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186090.8209333-CDS-P-wetherbeei_contig1657:2889..33031683186090.8209333-CDS-P-wetherbeei_contig1657:2889..3303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1657 2890..3303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1657.3.1prot_P-wetherbeei_contig1657.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1657 2890..3303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1657.3.1

>prot_P-wetherbeei_contig1657.3.1 ID=prot_P-wetherbeei_contig1657.3.1|Name=mRNA_P-wetherbeei_contig1657.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MYVPTEQVGIIVGKAGAMVQNISRETDTKIVTPRSEGLLWSKVLIKGDPT
GTFEAFERIEGMVDGEVWACGCTCFHLPQPAEEVGCHGFSLLVAVATPVS
VWKLGTSNAILRSHIGSLKHAIAPTIPLLLNILCHIF*
back to top

mRNA from alignment at P-wetherbeei_contig1657:2856..3390+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1657.3.1 ID=mRNA_P-wetherbeei_contig1657.3.1|Name=mRNA_P-wetherbeei_contig1657.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=535bp|location=Sequence derived from alignment at P-wetherbeei_contig1657:2856..3390+ (Phaeothamnion wetherbeei SAG_119_79)
CCATCACTCTCTCTTGGGCCGGTTCTTGCTCGAGATGTATGTGCCCACAG AGCAAGTGGGGATCATCGTTGGCAAGGCTGGCGCTATGGTCCAGAACATC TCCCGAGAGACCGACACGAAGATTGTGACGCCCCGCAGTGAGGGCCTGCT CTGGTCGAAGGTGCTCATCAAGGGCGACCCGACGGGCACCTTTGAAGCCT TTGAGCGCATCGAAGGCATGGTCGACGGTGAGGTTTGGGCGTGCGGTTGC ACATGTTTTCACCTGCCACAACCTGCTGAGGAAGTAGGATGTCATGGATT TTCTCTCCTTGTAGCAGTTGCAACTCCTGTGAGCGTCTGGAAGTTAGGAA CTTCCAATGCAATCCTAAGGAGCCACATCGGGTCTTTAAAGCATGCCATT GCCCCAACTATCCCCTTACTCTTAAACATTCTTTGCCATATTTTTTAGAG GTGGACGAGGGCGTGGCAGACTTCCCCATCCCTTCCAAGCTCCACACGGC CATCATCGGCCCCGACGGCCAAACCATCCGTCGCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1657:2856..3390+

>mRNA_P-wetherbeei_contig1657.3.1 ID=mRNA_P-wetherbeei_contig1657.3.1|Name=mRNA_P-wetherbeei_contig1657.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig1657:2856..3390+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTATGTGCCCACAGAGCAAGTGGGGATCATCGTTGGCAAGGCTGGCGC
TATGGTCCAGAACATCTCCCGAGAGACCGACACGAAGATTGTGACGCCCC
GCAGTGAGGGCCTGCTCTGGTCGAAGGTGCTCATCAAGGGCGACCCGACG
GGCACCTTTGAAGCCTTTGAGCGCATCGAAGGCATGGTCGACGGTGAGGT
TTGGGCGTGCGGTTGCACATGTTTTCACCTGCCACAACCTGCTGAGGAAG
TAGGATGTCATGGATTTTCTCTCCTTGTAGCAGTTGCAACTCCTGTGAGC
GTCTGGAAGTTAGGAACTTCCAATGCAATCCTAAGGAGCCACATCGGGTC
TTTAAAGCATGCCATTGCCCCAACTATCCCCTTACTCTTAAACATTCTTT
GCCATATTTTTTAG
back to top