mRNA_P-wetherbeei_contig1656.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1656.5.1
Unique NamemRNA_P-wetherbeei_contig1656.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Match: A0A835Z6H3_9STRA (3-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H3_9STRA)

HSP 1 Score: 179 bits (454), Expect = 8.810e-52
Identity = 87/129 (67.44%), Postives = 107/129 (82.95%), Query Frame = 1
Query:   16 ERRVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVKNFDATDFKCQIGSEVLGFSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGLEPAKYGDRCGVMVGSAFGGMETFEKQTLKLAASGPGKAS 402
            ++RVVVTG+GVVSG G  AD+FW+ ++ G+ SI RV+ FD +++KCQIGSEV  F+A DYFT+KK+ KSNDRVTHFAMAA RLA+DDAG++    GDR GVMVGSAFGGM+TFEKQ LKLA+SGP K S
Sbjct:   49 KKRVVVTGMGVVSGCGKDADSFWEFLLAGKSSIARVEAFDVSEYKCQIGSEVRDFTAADYFTDKKSAKSNDRVTHFAMAAARLAIDDAGIDIRACGDRAGVMVGSAFGGMDTFEKQVLKLASSGPSKVS 177          
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Match: D8LBL8_ECTSI (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL8_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.480e-47
Identity = 81/129 (62.79%), Postives = 101/129 (78.29%), Query Frame = 1
Query:    1 MAAKSERRVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVKNFDATDFKCQIGSEVLGFSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGLEPAKYGDRCGVMVGSAFGGMETFEKQTLKLAASG 387
            M+A     VVVTGLGVVSG GTG DAFW+ ++ G  SI+RV+ FD   FKCQIGSEV  F A  YF+ +K++++NDRVTHFA+AAT+LA++DAG++ A  G+RCGVMVGSAFGGM+TFEKQTL L   G
Sbjct:    1 MSAGGTDTVVVTGLGVVSGVGTGVDAFWEGLLKGESSINRVEGFDPERFKCQIGSEVKDFDASKYFSARKSMRNNDRVTHFAVAATKLAIEDAGVDVAASGERCGVMVGSAFGGMDTFEKQTLNLENKG 129          
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Match: A0A7S3P9I8_9STRA (3-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P9I8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.470e-42
Identity = 85/132 (64.39%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    7 AKSERRVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVKNFDATDFKCQIGSEVLG--FSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGL----EPAKYGDRCGVMVGSAFGGMETFEKQTLKLAAS 384
            A   +RVVVTGLGV+SG G GADAF+DA+V G+ SIDRVK FD     CQI SEV    F A D+F N KN KSNDR THFA+AA R AL DAGL    E  K  +R GVMVGSAFGGMETFE+QTLKLA++
Sbjct:   38 ADDSKRVVVTGLGVISGCGIGADAFFDAIVEGKSSIDRVKRFDIQYMPCQIASEVPDEMFDANDHFVNPKNAKSNDRFTHFAVAAARQALKDAGLGDTPETLKNPERVGVMVGSAFGGMETFEQQTLKLASN 169          
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Match: L1K1Y4_GUITC (3-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K1Y4_GUITC)

HSP 1 Score: 149 bits (377), Expect = 8.320e-41
Identity = 79/135 (58.52%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    1 MAAKSERRVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVKNFDATDFKCQIGSEVLGFSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGLEPAKYG-DRCGVMVGSAFGGMETFEKQTLKLAASGPGKAS 402
            M+A  ++RVVVTGLGV+SG G     FW  +V G+ SI RV +FD +D+ CQI S+V  F+ GD+FTN K  KSNDR TH A+AA R A+ DAGL+  K    R GVMVGSAFGGM TFE+QTLKL+A GP K S
Sbjct:    1 MSADPKKRVVVTGLGVMSGLGQELGEFWSNLVEGKTSIARVSHFDPSDYTCQIASQVGDFTPGDFFTNAKTAKSNDRFTHLAVAAARRAVGDAGLDLGKVDKSRMGVMVGSAFGGMATFEEQTLKLSAGGPKKVS 135          
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Match: A0A1Z5K979_FISSO (3-oxoacyl-[acyl-carrier-protein] synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K979_FISSO)

HSP 1 Score: 147 bits (371), Expect = 1.300e-39
Identity = 76/128 (59.38%), Postives = 95/128 (74.22%), Query Frame = 1
Query:    7 AKSERRVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVKNFDATDFKCQIGSEVLGFSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGL----EPAKYGDRCGVMVGSAFGGMETFEKQTLKLA 378
            A  +RRVVVTGLGV+SG GT  D F+ A + G+ S+ +V+ FDA+ + CQI SEV  F+  DYF N KNVKSNDR THFA+A+ R+AL DAGL    E  ++ DR GVMVG+AFGG ETFE++TLKLA
Sbjct:   41 ADEKRRVVVTGLGVISGCGTNPDDFFQACLEGKSSLGKVQRFDASAYPCQIASEVHDFNPEDYFINPKNVKSNDRFTHFAVASARMALKDAGLGDTPETLQHADRVGVMVGTAFGGAETFEQETLKLA 168          
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Match: K0SJT3_THAOC (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJT3_THAOC)

HSP 1 Score: 143 bits (361), Expect = 4.120e-38
Identity = 78/126 (61.90%), Postives = 92/126 (73.02%), Query Frame = 1
Query:   16 ERRVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVKNFDATDFKCQIGSEVLG--FSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGL----EPAKYGDRCGVMVGSAFGGMETFEKQTLKL 375
            ++RVVVTGLGVVSG G G + F+D VVNG  S+DR+  FD T + CQIGSEV    F   D+F N KN KSNDR THFA+AA+RLAL DA L    E  +  D+ GVMVGSAFGGMETFE++TLKL
Sbjct:   47 KKRVVVTGLGVVSGCGVGHETFFDNVVNGVSSLDRITRFDVTHYPCQIGSEVPDSMFDPKDHFANPKNAKSNDRFTHFAVAASRLALKDAKLGDTPETLENPDKIGVMVGSAFGGMETFERETLKL 172          
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Match: A0A7S1U7G8_9STRA (3-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7G8_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.100e-36
Identity = 81/139 (58.27%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    4 AAKSERRVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVK-NFDATDFKCQIGSEVLG--FSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGL-EPAKYG--DRCGVMVGSAFGGMETFEKQTLKLAASGPGKAS 402
            AA ++RRVVVTGLG VSG G G + F D ++ G+ S+ R++ NFD +DF CQIGSEV    F+  +YF  KKNV+SNDR THFAMAA +LAL DA L E A  G  D+ GV++GSAFGGM TFE+QTL L  SGP   S
Sbjct:   17 AADAKRRVVVTGLGPVSGCGIGQEDFMDFLLAGKSSLGRIEENFDCSDFACQIGSEVPSSMFNPAEYFKVKKNVRSNDRYTHFAMAAAKLALKDAALDEDALSGNADKFGVVIGSAFGGMATFEQQTLNLQESGPRAVS 155          
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Match: A0A7S4W2J6_9STRA (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W2J6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.250e-36
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = 1
Query:    1 MAAKSER-RVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVKNFDATDFKCQIGSEVLG--FSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGL----EPAKYGDRCGVMVGSAFGGMETFEKQTLKLAA 381
            M+A+S++ RVVVTGLGV+SG G G   F+ + ++G+ S+  V  FDA+ + C IGSEV    F   D+FTN KNVK+NDR THFA+AA RLAL DAG+    E  +  DR GVM+G+AFGGMETFE++TLKLAA
Sbjct:   41 MSAESDKTRVVVTGLGVISGCGIGHSDFFQSCLDGKSSLGTVTRFDASKYPCSIGSEVPDEMFDPNDHFTNPKNVKTNDRYTHFAVAAARLALKDAGVGDTPETLENPDRIGVMIGTAFGGMETFERETLKLAA 174          
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Match: A0A7S2H6S7_9STRA (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H6S7_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.250e-36
Identity = 75/134 (55.97%), Postives = 100/134 (74.63%), Query Frame = 1
Query:    1 MAAKSER-RVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVKNFDATDFKCQIGSEVLG--FSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGL----EPAKYGDRCGVMVGSAFGGMETFEKQTLKLAA 381
            M+A+S++ RVVVTGLGVVSG G G   F+ A ++G+ S+D VK FDA+ + CQIGSEV    F   D+F+N KN+++NDR THFA+AA R+AL D G+    E  +  +R GVMVG+AFGGMETFE++TLKLA+
Sbjct:   41 MSAESDKTRVVVTGLGVVSGCGMGHGDFFQACIDGKSSLDTVKRFDASKYTCQIGSEVPDEMFDPKDHFSNPKNIRTNDRFTHFAVAAARMALKDGGVGDVAETMENPERIGVMVGTAFGGMETFEQETLKLAS 174          
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Match: A0A7S2S6B7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S6B7_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.770e-36
Identity = 70/128 (54.69%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   10 KSERRVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVKNFDATDFKCQIGSEVLG--FSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGL----EPAKYGDRCGVMVGSAFGGMETFEKQTLKL 375
            + ++RVVVTGLGVVSG G G + F+ + V+G  S+DR++ FD +++ CQIGSEV    F   DYF N KNV+SNDR THFA+AA RLA+ DA L    E     +R GVMVG+AFGG+ET EK+ +KL
Sbjct:   48 EDDKRVVVTGLGVVSGCGIGQEDFFQSCVDGVSSLDRIQRFDISNYPCQIGSEVPDSMFDPADYFINHKNVRSNDRFTHFAVAAARLAMKDAELNDVPETLSNPERIGVMVGTAFGGLETIEKEHIKL 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1656.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6H3_9STRA8.810e-5267.443-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=... [more]
D8LBL8_ECTSI1.480e-4762.79Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S3P9I8_9STRA4.470e-4264.393-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=... [more]
L1K1Y4_GUITC8.320e-4158.523-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=... [more]
A0A1Z5K979_FISSO1.300e-3959.383-oxoacyl-[acyl-carrier-protein] synthase n=2 Tax=... [more]
K0SJT3_THAOC4.120e-3861.90Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S1U7G8_9STRA1.100e-3658.273-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=... [more]
A0A7S4W2J6_9STRA3.250e-3656.72Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S2H6S7_9STRA3.250e-3655.97Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S2S6B7_9STRA4.770e-3654.69Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1656contigP-wetherbeei_contig1656:4150..4956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog55529.EKX54826
PFAMsKetoacyl-synt_C,ketoacyl-synt
Model size414
Max annot lvl2759|Eukaryota
KEGG rclassRC00039,RC02728,RC02729,RC02888
KEGG koko:K09458
KEGG ReactionR04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119
KEGG Pathwayko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.36e-41
EggNOG OGsCOG0304@1|root,KOG1394@2759|Eukaryota
EC2.3.1.179
Description3-oxoacyl-[acyl-carrier-protein] synthase activity
Cds size414
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186090.6024072-CDS-P-wetherbeei_contig1656:4149..43931683186090.6024072-CDS-P-wetherbeei_contig1656:4149..4393Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1656 4150..4393 +
1683186090.61176-CDS-P-wetherbeei_contig1656:4786..49561683186090.61176-CDS-P-wetherbeei_contig1656:4786..4956Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1656 4787..4956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1656.5.1prot_P-wetherbeei_contig1656.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1656 4150..4956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1656.5.1

>prot_P-wetherbeei_contig1656.5.1 ID=prot_P-wetherbeei_contig1656.5.1|Name=mRNA_P-wetherbeei_contig1656.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MAAKSERRVVVTGLGVVSGTGTGADAFWDAVVNGRCSIDRVKNFDATDFK
CQIGSEVLGFSAGDYFTNKKNVKSNDRVTHFAMAATRLALDDAGLEPAKY
GDRCGVMVGSAFGGMETFEKQTLKLAASGPGKASYHK*
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mRNA from alignment at P-wetherbeei_contig1656:4150..4956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1656.5.1 ID=mRNA_P-wetherbeei_contig1656.5.1|Name=mRNA_P-wetherbeei_contig1656.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig1656:4150..4956+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGAAGTCGGAGCGACGAGTCGTTGTGACAGGCTTGGGCGTGGT ATCCGGAACGGGTACGGGAGCCGACGCGTTCTGGGACGCTGTGGTCAACG GCCGTTGCTCGATTGATCGCGTGAAAAACTTCGACGCGACAGACTTTAAA TGCCAAATCGGCAGCGAGGTCCTCGGCTTTAGCGCTGGCGATTACTTTAC GAACAAGAAGAACGTAAAGTCAAACGATCGAGTGACGCACTTTGGTGAGT GTCTTTCTTTGCGTTGTCTCGCTGAAAAGGGTTGAAGTCTAGTCTAGAAC TTCCCTTAGTAAGCCAGCGCGAGTGTAGTTCAACCATGTTATACGTCGCT GAGACACGCAATTCCCTCGCTTTGGCAACCAGATGGTCAACCGTTGCTGC AGAAAACAGTTATCGAGCGACATCGCAGCGTAGCATTTTCTTGCTTTCCG CTCCTTTTCGTGTCTGGAAACGGGCCTTAACCTGCTTTGCCCTCTGCCTC ACCGCCGTTCCACACGGCTCCATCGGCGCCGCCGCCATCACTGTTTCCTG CCATTGCACTCACGATTCACTGATCAATCGATGCATCGCCGCCGCGGCGC TTACCGCCGTCGGCCCACCCCGCCCGGCCCGGAGCAGCGATGGCGGCAAC GCGGCTGGCGCTGGACGACGCGGGGCTCGAGCCCGCAAAATACGGCGACC GCTGCGGCGTGATGGTTGGGTCGGCCTTCGGGGGTATGGAGACGTTTGAG AAACAGACGCTTAAGCTGGCGGCGAGCGGACCCGGAAAGGCGAGTTATCA TAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1656:4150..4956+

>mRNA_P-wetherbeei_contig1656.5.1 ID=mRNA_P-wetherbeei_contig1656.5.1|Name=mRNA_P-wetherbeei_contig1656.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig1656:4150..4956+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGAAGTCGGAGCGACGAGTCGTTGTGACAGGCTTGGGCGTGGT
ATCCGGAACGGGTACGGGAGCCGACGCGTTCTGGGACGCTGTGGTCAACG
GCCGTTGCTCGATTGATCGCGTGAAAAACTTCGACGCGACAGACTTTAAA
TGCCAAATCGGCAGCGAGGTCCTCGGCTTTAGCGCTGGCGATTACTTTAC
GAACAAGAAGAACGTAAAGTCAAACGATCGAGTGACGCACTTTGCGATGG
CGGCAACGCGGCTGGCGCTGGACGACGCGGGGCTCGAGCCCGCAAAATAC
GGCGACCGCTGCGGCGTGATGGTTGGGTCGGCCTTCGGGGGTATGGAGAC
GTTTGAGAAACAGACGCTTAAGCTGGCGGCGAGCGGACCCGGAAAGGCGA
GTTATCATAAATGA
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