mRNA_P-wetherbeei_contig1647.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1647.2.1
Unique NamemRNA_P-wetherbeei_contig1647.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1647.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1647contigP-wetherbeei_contig1647:6200..6845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size648
Hectar predicted targeting categoryother localisation
Exons1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.847727-CDS-P-wetherbeei_contig1647:6199..66551683186087.847727-CDS-P-wetherbeei_contig1647:6199..6655Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1647 6200..6655 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186087.8608463-UTR-P-wetherbeei_contig1647:6655..68451683186087.8608463-UTR-P-wetherbeei_contig1647:6655..6845Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1647 6656..6845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1647.2.1prot_P-wetherbeei_contig1647.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1647 6200..6655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1647.2.1

>prot_P-wetherbeei_contig1647.2.1 ID=prot_P-wetherbeei_contig1647.2.1|Name=mRNA_P-wetherbeei_contig1647.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
QFLGAVSQPHPAPIRLEPSSTCCATRLTCPRLEFPKVYCLPYGIQPPVSN
CWPITNCRTNCNCPGCGNLGDGSPTSRTVAGRSGTEGASPVSPPGAAVMD
LREKASAALVTDATAPAAAGSGGEEVEPAGSCAEGGGIDGTVGSSYVAGQ
L*
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mRNA from alignment at P-wetherbeei_contig1647:6200..6845+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1647.2.1 ID=mRNA_P-wetherbeei_contig1647.2.1|Name=mRNA_P-wetherbeei_contig1647.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=646bp|location=Sequence derived from alignment at P-wetherbeei_contig1647:6200..6845+ (Phaeothamnion wetherbeei SAG_119_79)
CAGTTTTTGGGAGCGGTTTCCCAGCCGCACCCGGCGCCGATTCGCTTGGA
ACCCAGTAGTACATGTTGCGCAACCCGCCTTACATGCCCCCGCCTTGAGT
TTCCAAAAGTTTACTGTTTGCCCTACGGAATCCAACCACCTGTGAGTAAT
TGTTGGCCAATTACTAATTGCAGAACTAATTGTAATTGTCCGGGGTGTGG
AAACCTAGGTGACGGTTCTCCTACTTCGAGAACGGTGGCGGGCCGCAGTG
GGACAGAAGGCGCTTCCCCGGTGTCTCCACCGGGTGCCGCCGTTATGGAC
CTGCGTGAGAAGGCGTCCGCTGCACTAGTGACGGACGCGACGGCCCCAGC
GGCCGCGGGCTCGGGCGGGGAGGAGGTAGAACCGGCCGGGAGCTGCGCGG
AAGGCGGTGGTATCGATGGAACTGTCGGCAGTTCATACGTCGCTGGACAA
CTTTGATGCCGCCGCCAACGTGCTGCAACTTGCGGTGGTGGCCGCCGTTC
CCGGGGGCTTCGTCAAGGCGGGGGCGGTCCGACACGCTCCGACGGAGATG
GGTTTGGCGGCGAACAACGCCCGCGGCCTCAACGTCGGGTAAAAAATGGA
TCGAATGGTTTCGACACCGTCGCCGGCGACAGCGCGTCGCAGGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1647:6200..6845+

>mRNA_P-wetherbeei_contig1647.2.1 ID=mRNA_P-wetherbeei_contig1647.2.1|Name=mRNA_P-wetherbeei_contig1647.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig1647:6200..6845+ (Phaeothamnion wetherbeei SAG_119_79)
CAGTTTTTGGGAGCGGTTTCCCAGCCGCACCCGGCGCCGATTCGCTTGGA
ACCCAGTAGTACATGTTGCGCAACCCGCCTTACATGCCCCCGCCTTGAGT
TTCCAAAAGTTTACTGTTTGCCCTACGGAATCCAACCACCTGTGAGTAAT
TGTTGGCCAATTACTAATTGCAGAACTAATTGTAATTGTCCGGGGTGTGG
AAACCTAGGTGACGGTTCTCCTACTTCGAGAACGGTGGCGGGCCGCAGTG
GGACAGAAGGCGCTTCCCCGGTGTCTCCACCGGGTGCCGCCGTTATGGAC
CTGCGTGAGAAGGCGTCCGCTGCACTAGTGACGGACGCGACGGCCCCAGC
GGCCGCGGGCTCGGGCGGGGAGGAGGTAGAACCGGCCGGGAGCTGCGCGG
AAGGCGGTGGTATCGATGGAACTGTCGGCAGTTCATACGTCGCTGGACAA
CTTTGA
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