mRNA_P-wetherbeei_contig16386.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16386.1.1
Unique NamemRNA_P-wetherbeei_contig16386.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Match: D7G9C4_ECTSI (MIP family channel protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9C4_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 8.930e-10
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 1
Query:    1 PPSKKGPSEWYYSWVPVVGPFIGGALGGFLFAACRTMNDYADW 129
            P   KGPSEWYY++VPVVGP IGG LG   F  C  +NDY  W
Sbjct:  469 PIPNKGPSEWYYAFVPVVGPLIGGFLGAAAFYGCIQLNDYPAW 511          
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Match: A0A0L0FRC0_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FRC0_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 2.910e-9
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    1 PPSKKGPSEWYYSWVPVVGPFIGGALGGFLFAACRTMNDYADWS 132
            P   KGPSEW+Y+WVP++GP+IGG + G  F   R +  Y  WS
Sbjct:  196 PIPNKGPSEWHYAWVPILGPYIGGTIAGLCFVGTRNLLTYPAWS 239          
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Match: A0A2Y9APM7_9MICO (Glycerol uptake facilitator protein n=1 Tax=Georgenia satyanarayanai TaxID=860221 RepID=A0A2Y9APM7_9MICO)

HSP 1 Score: 53.5 bits (127), Expect = 3.680e-7
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = 1
Query:   13 KGPSEWYYSWVPVVGPFIGGALGGFLFA 96
            KGPS+W YSWVP+VGP IGGALGGF  A
Sbjct:  219 KGPSDWGYSWVPIVGPLIGGALGGFAAA 246          
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Match: C8XD76_NAKMY (Major intrinsic protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / CIP 104796 / JCM 9543 / NBRC 105858 / Y-104) TaxID=479431 RepID=C8XD76_NAKMY)

HSP 1 Score: 52.8 bits (125), Expect = 7.040e-7
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 1
Query:   13 KGPSEWYYSWVPVVGPFIGGALGGFLFAA 99
            KG S+W YSWVP+VGPFIGGALG  LF A
Sbjct:  210 KGSSDWGYSWVPIVGPFIGGALGALLFLA 238          
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Match: E1ZN74_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZN74_CHLVA)

HSP 1 Score: 52.8 bits (125), Expect = 7.590e-7
Identity = 22/38 (57.89%), Postives = 25/38 (65.79%), Query Frame = 1
Query:    1 PPSKKGPSEWYYSWVPVVGPFIGGALGGFLFAACRTMN 114
            P + KGPSEWYYSW+P   P  GGAL G  F A + MN
Sbjct:  225 PIAGKGPSEWYYSWIPFFAPLCGGALAGGFFLAVQKMN 262          
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Match: UPI001FE9CC24 (aquaporin family protein n=1 Tax=Alkalihalobacillus patagoniensis TaxID=228576 RepID=UPI001FE9CC24)

HSP 1 Score: 52.4 bits (124), Expect = 8.350e-7
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 1
Query:    1 PPSKKGPSEWYYSWVPVVGPFIGGALGGFLF 93
            P +KKGPS+W YSWVP++GP  GG +G FLF
Sbjct:  189 PINKKGPSDWAYSWVPILGPITGGVVGAFLF 219          
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Match: A0A3N2JUU8_9CELL (Glycerol uptake facilitator protein n=1 Tax=Cellulomonas sp. PhB143 TaxID=2485186 RepID=A0A3N2JUU8_9CELL)

HSP 1 Score: 52.4 bits (124), Expect = 9.450e-7
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 1
Query:   13 KGPSEWYYSWVPVVGPFIGGALGGFLFAA 99
            KG S+W YSWVPV+GPF GGALGG L AA
Sbjct:  213 KGTSDWAYSWVPVIGPFAGGALGGLLAAA 241          
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Match: A0A8H9L4C0_9MICO (Glycerol transporter n=1 Tax=Promicromonospora citrea TaxID=43677 RepID=A0A8H9L4C0_9MICO)

HSP 1 Score: 52.0 bits (123), Expect = 1.310e-6
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 1
Query:   13 KGPSEWYYSWVPVVGPFIGGALGGFLFAA 99
            KG S+W YSWVPVVGP IGGALGG L AA
Sbjct:  213 KGSSDWGYSWVPVVGPLIGGALGGLLSAA 241          
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Match: A0A1T5KCB6_9BACT (Glycerol uptake facilitator protein n=1 Tax=Ohtaekwangia koreensis TaxID=688867 RepID=A0A1T5KCB6_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.740e-6
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1
Query:   13 KGPSEWYYSWVPVVGPFIGGALGGFLFAA 99
            KGPS+W YSW+PVVGP IGG +G +LF A
Sbjct:  204 KGPSDWGYSWIPVVGPIIGGVMGAWLFKA 232          
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Match: A0A8B5W672_9LACT (Aquaporin family protein n=1 Tax=Alkalibacterium sp. TaxID=1872447 RepID=A0A8B5W672_9LACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.770e-6
Identity = 18/31 (58.06%), Postives = 26/31 (83.87%), Query Frame = 1
Query:    1 PPSKKGPSEWYYSWVPVVGPFIGGALGGFLF 93
            P + KG S+W Y+W+P+VGPF+GGA+G F+F
Sbjct:  205 PIANKGSSDWEYAWIPIVGPFLGGAIGAFIF 235          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16386.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9C4_ECTSI8.930e-1060.47MIP family channel protein n=2 Tax=Ectocarpus TaxI... [more]
A0A0L0FRC0_9EUKA2.910e-950.00Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A2Y9APM7_9MICO3.680e-778.57Glycerol uptake facilitator protein n=1 Tax=George... [more]
C8XD76_NAKMY7.040e-775.86Major intrinsic protein n=1 Tax=Nakamurella multip... [more]
E1ZN74_CHLVA7.590e-757.89Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
UPI001FE9CC248.350e-764.52aquaporin family protein n=1 Tax=Alkalihalobacillu... [more]
A0A3N2JUU8_9CELL9.450e-775.86Glycerol uptake facilitator protein n=1 Tax=Cellul... [more]
A0A8H9L4C0_9MICO1.310e-679.31Glycerol transporter n=1 Tax=Promicromonospora cit... [more]
A0A1T5KCB6_9BACT1.740e-668.97Glycerol uptake facilitator protein n=1 Tax=Ohtaek... [more]
A0A8B5W672_9LACT1.770e-658.06Aquaporin family protein n=1 Tax=Alkalibacterium s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16386contigP-wetherbeei_contig16386:1333..1464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G9C4
PFAMsMIP
Model size132
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.46e-10
EggNOG OGs2DTS9@1|root,2S6IG@2759|Eukaryota
DescriptionMajor intrinsic protein
Cds size132
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186085.1752765-CDS-P-wetherbeei_contig16386:1332..14641683186085.1752765-CDS-P-wetherbeei_contig16386:1332..1464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16386 1333..1464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16386.1.1prot_P-wetherbeei_contig16386.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16386 1333..1464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16386.1.1

>prot_P-wetherbeei_contig16386.1.1 ID=prot_P-wetherbeei_contig16386.1.1|Name=mRNA_P-wetherbeei_contig16386.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
PPSKKGPSEWYYSWVPVVGPFIGGALGGFLFAACRTMNDYADWS
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mRNA from alignment at P-wetherbeei_contig16386:1333..1464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16386.1.1 ID=mRNA_P-wetherbeei_contig16386.1.1|Name=mRNA_P-wetherbeei_contig16386.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig16386:1333..1464- (Phaeothamnion wetherbeei SAG_119_79)
CCTCCCTCGAAAAAGGGCCCGTCGGAGTGGTACTACAGCTGGGTGCCAGT GGTTGGCCCGTTCATCGGCGGCGCCCTCGGCGGCTTTCTCTTCGCAGCGT GCCGCACCATGAACGATTACGCTGACTGGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16386:1333..1464-

>mRNA_P-wetherbeei_contig16386.1.1 ID=mRNA_P-wetherbeei_contig16386.1.1|Name=mRNA_P-wetherbeei_contig16386.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig16386:1333..1464- (Phaeothamnion wetherbeei SAG_119_79)
CCTCCCTCGAAAAAGGGCCCGTCGGAGTGGTACTACAGCTGGGTGCCAGT
GGTTGGCCCGTTCATCGGCGGCGCCCTCGGCGGCTTTCTCTTCGCAGCGT
GCCGCACCATGAACGATTACGCTGACTGGAGC
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