mRNA_P-wetherbeei_contig16378.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16378.1.1
Unique NamemRNA_P-wetherbeei_contig16378.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16378.1.1 vs. uniprot
Match: A0A484EIF9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EIF9_BRELC)

HSP 1 Score: 62.0 bits (149), Expect = 1.290e-8
Identity = 31/102 (30.39%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:  100 DGAVRLVEWVHALSGAEYWAAILLTTIGLRLVMLVPTAWSMGNAARLTIARPEIERHKKLIESDARNRDPQFLKQYRKSMYELLRRHNVKPMGALIVPLIQV 405
            D A+R ++ VH+ +G  +WA I+ TTI +R         +M NAA +   +PE+++ ++L+ ++   RDP+  K++++    L+++H+V+P+ ++++PL Q+
Sbjct:   99 DLAIRSLDIVHSTTGLPWWATIVATTIVVRTAFFPLAVKTMRNAANMKRIQPEMDKLRELMNANP-TRDPETTKEFQRKCTALMKKHDVRPLKSVLMPLAQI 199
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BLAST of mRNA_P-wetherbeei_contig16378.1.1 vs. uniprot
Match: B6K432_SCHJY (Inner membrane translocase Oxa101 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K432_SCHJY)

HSP 1 Score: 59.3 bits (142), Expect = 1.150e-7
Identity = 32/95 (33.68%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  118 VEWVHALSGAEYWAAILLTTIGLRLVMLVPTAWSMGNAARLTIARPEIERHKKLIESDARNRDPQFLKQYRKSMYELLRRHNVKPMGALIVPLIQ 402
            V  +H +SGA +WA+I+LTTIG+R +ML  T  SM NA  L+  +P ++++   +++     D   + Q   ++ ++ R +N+ P+   I P+IQ
Sbjct:   80 VNGIHCISGAPWWASIILTTIGIRSLMLPLTLRSMKNARALSHIQPRVKKYVDAMKAAKLENDTYAVTQNAYAIQKIYRSNNINPLTVAISPIIQ 174
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BLAST of mRNA_P-wetherbeei_contig16378.1.1 vs. uniprot
Match: A0A7S0D5U6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D5U6_MICPS)

HSP 1 Score: 55.1 bits (131), Expect = 3.250e-6
Identity = 28/85 (32.94%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  118 VEWVHALSGAEYWAAILLTTIGLRLVMLVPTAWSMGNAARLTIARPEIERHKKLIESDARNRDPQFLKQYRKSMYELLRRHNVKP 372
            +E+ H     E+WAAI+ TT+ +R+V L  T     NAAR+ +A+PEIE   KL ++ ++  D + L++Y+  ++++  +++  P
Sbjct:   49 IEYFHVAQDMEWWAAIVATTVAMRVVALPLTVMQQKNAARMHLAKPEIEAINKLAQTHSQ--DKEALERYQAEIWKIWAKYDCNP 131
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BLAST of mRNA_P-wetherbeei_contig16378.1.1 vs. uniprot
Match: A0A0L0SNU3_ALLM3 (YidC/Oxa1 family membrane protein insertase n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SNU3_ALLM3)

HSP 1 Score: 53.9 bits (128), Expect = 9.160e-6
Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  118 VEWVHALSGAEYWAAILLTTIGLRLVMLVPTAWSMGNAARLTIARPEIERHKKLIESDARNRDPQFLKQYRKSMYELLRRHNVKPMGALIVPLIQ 402
            +E +HA +G  +WA+I   T+G+R  +         NA  +   RPE++R   +I++  ++ D   +K+   +  +L  RHNV P+ AL VPL+Q
Sbjct:  142 LEVLHATAGLPWWASIAAMTVGIRFTLFPLMVKLQRNAVVMHNIRPELDRITAMIQTAQQSGDAVAMKEAAMAAQDLFHRHNVHPLKALGVPLMQ 236
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BLAST of mRNA_P-wetherbeei_contig16378.1.1 vs. uniprot
Match: A0A7S3UGU2_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UGU2_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 4.110e-5
Identity = 28/94 (29.79%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:  118 VEWVHALSGAEYWAAILLTTIGLRLVMLVPTAWSMGNAARLTIARPEIERHKKLIESDARNRDPQFLKQYRKSMYELLRR---HNVKPMGALIV 390
            +E+VH  +G  +WA I  TT  LR ++     + + N A+L++ARPEIE+  + ++    + DP+ +++Y+  + E+ ++   H +K  G+++V
Sbjct:   96 LEFVHLQTGMPWWATIAATTFALRTLLFPVVIYQIKNTAKLSLARPEIEKLAEQLKMQGSS-DPKTVEKYQGQIQEVWKKYDCHPIKSFGSILV 188
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16378.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A484EIF9_BRELC1.290e-830.39Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
B6K432_SCHJY1.150e-733.68Inner membrane translocase Oxa101 n=1 Tax=Schizosa... [more]
A0A7S0D5U6_MICPS3.250e-632.94Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A0L0SNU3_ALLM39.160e-632.63YidC/Oxa1 family membrane protein insertase n=1 Ta... [more]
A0A7S3UGU2_9CHLO4.110e-529.79Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16378contigP-wetherbeei_contig16378:155..559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog272952.HpaP804183
Model size405
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.01e-13
EggNOG OGsCOG0706@1|root,KOG4379@1|root,KOG1239@2759|Eukaryota,KOG4379@2759|Eukaryota,3QIWP@4776|Peronosporales
Descriptionmembrane insertase activity
Cds size405
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.9299774-CDS-P-wetherbeei_contig16378:154..5591683186084.9299774-CDS-P-wetherbeei_contig16378:154..559Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16378 155..559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16378.1.1prot_P-wetherbeei_contig16378.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16378 155..559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16378.1.1

>prot_P-wetherbeei_contig16378.1.1 ID=prot_P-wetherbeei_contig16378.1.1|Name=mRNA_P-wetherbeei_contig16378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MASSGGGDAAAAAAGAAADAGARSFAELGHLWGDGAVRLVEWVHALSGAE
YWAAILLTTIGLRLVMLVPTAWSMGNAARLTIARPEIERHKKLIESDARN
RDPQFLKQYRKSMYELLRRHNVKPMGALIVPLIQV
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mRNA from alignment at P-wetherbeei_contig16378:155..559-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16378.1.1 ID=mRNA_P-wetherbeei_contig16378.1.1|Name=mRNA_P-wetherbeei_contig16378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig16378:155..559- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAGCAGTGGCGGCGGCGACGCCGCAGCCGCCGCGGCCGGAGCTGC
CGCCGATGCCGGCGCGCGCTCCTTCGCGGAGCTCGGCCACCTCTGGGGCG
ACGGCGCCGTCCGTCTCGTCGAGTGGGTGCACGCGCTGAGCGGTGCTGAG
TACTGGGCCGCCATCCTCCTGACGACAATCGGCCTGCGGCTGGTCATGCT
GGTGCCAACGGCGTGGTCGATGGGTAACGCGGCGCGGCTGACCATCGCAC
GCCCGGAGATCGAGCGGCACAAGAAGCTGATCGAGTCGGACGCCCGAAAC
CGCGACCCGCAGTTCCTGAAGCAATACCGCAAGAGCATGTACGAGCTTCT
GCGGCGGCACAACGTCAAGCCGATGGGCGCGCTCATCGTCCCGCTCATCC
AGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16378:155..559-

>mRNA_P-wetherbeei_contig16378.1.1 ID=mRNA_P-wetherbeei_contig16378.1.1|Name=mRNA_P-wetherbeei_contig16378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig16378:155..559- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAGCAGTGGCGGCGGCGACGCCGCAGCCGCCGCGGCCGGAGCTGC
CGCCGATGCCGGCGCGCGCTCCTTCGCGGAGCTCGGCCACCTCTGGGGCG
ACGGCGCCGTCCGTCTCGTCGAGTGGGTGCACGCGCTGAGCGGTGCTGAG
TACTGGGCCGCCATCCTCCTGACGACAATCGGCCTGCGGCTGGTCATGCT
GGTGCCAACGGCGTGGTCGATGGGTAACGCGGCGCGGCTGACCATCGCAC
GCCCGGAGATCGAGCGGCACAAGAAGCTGATCGAGTCGGACGCCCGAAAC
CGCGACCCGCAGTTCCTGAAGCAATACCGCAAGAGCATGTACGAGCTTCT
GCGGCGGCACAACGTCAAGCCGATGGGCGCGCTCATCGTCCCGCTCATCC
AGGTG
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