prot_P-wetherbeei_contig9067.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig9067.1.1
Unique Nameprot_P-wetherbeei_contig9067.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length122
Homology
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Match: A0A7D9JQ57_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JQ57_PARCT)

HSP 1 Score: 107 bits (268), Expect = 1.220e-26
Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 0
Query:    1 VNKTKTLPDNTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAVLAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWARPAINGIRQVLNLNKSIYGLKQSGNNWNRHI 119
            V   KT PD   E +KAR +A G+SQ+P IDY E+   SP  R +++R +L  A Q +  VHQ DVKTAYL AP+D  + +  P G+ R   NG R V  LNKS+YGLKQSG NWN  +
Sbjct:   16 VYTVKTGPDKA-ETYKARYVAKGYSQIPGIDYHETF--SPTARMSSIRILLQQAIQNDMLVHQMDVKTAYLNAPIDCEIFIEQPEGYERVGQNGERLVCKLNKSLYGLKQSGRNWNNML 131          
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 105 bits (262), Expect = 6.080e-24
Identity = 60/124 (48.39%), Postives = 78/124 (62.90%), Query Frame = 0
Query:    1 VNKTKTLPDNTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAVLAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWA---RPAINGIRQVLNLNKSIYGLKQSGNNWNRHIDA 121
            V K K   D ++ERFKARL+A G+SQ   IDY E  I SPVVR+T++R++LA A   +W + Q DVKTA+L+  LDE++ M  P G+    RP       V  LN+SIYGLKQ+   WN  ID 
Sbjct:  863 VFKVKHTADGSVERFKARLVAQGYSQSQGIDYQE--IFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPD-----HVCKLNRSIYGLKQAARCWNSAIDT 979          
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Match: A0A833XDW1_JUGRE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Juglans regia TaxID=51240 RepID=A0A833XDW1_JUGRE)

HSP 1 Score: 103 bits (258), Expect = 6.560e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 0
Query:    1 VNKTKTLPDNTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAVLAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWARPAINGIRQVLNLNKSIYGLKQSGNNW 115
            V KTK   D +IER+KARL+A G++QV  +DY E+   +PV + TT+R +LA AA+ NW +HQ DV  A+L   LDE V M PP G+      G  +V  L KS+YGLKQ+  NW
Sbjct:   31 VFKTKLKADGSIERYKARLVAKGYTQVEGLDYHETF--APVAKMTTVRCLLAIAAKKNWIIHQLDVNNAFLHGDLDEEVYMIPPPGYCT---QGETRVCRLRKSLYGLKQASRNW 140          
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Match: A0A151UAG0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UAG0_CAJCA)

HSP 1 Score: 102 bits (255), Expect = 8.680e-24
Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 0
Query:    1 VNKTKTLPDNTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAVLAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWARPAINGIRQVLNLNKSIYGLKQSGNNWNRHIDA 121
            V +TK   D+TIER KARL+A GF+Q+P  DY  S+  SPVV+ TT+R +L+ A    WP+HQ DVK A+L   L EIV M  P G+  P       V  LNK++YGLKQ+   W + + +
Sbjct:   48 VFRTKHKSDSTIERLKARLVAQGFTQIPGFDY--SLTFSPVVKATTIRLILSLAVLNGWPLHQLDVKNAFLHGHLTEIVYMEQPPGFVDPRFP--THVCRLNKALYGLKQAPRAWFQRLSS 164          
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Match: A0A6S7KHG6_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KHG6_PARCT)

HSP 1 Score: 103 bits (256), Expect = 1.070e-23
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 0
Query:   10 NTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAVLAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWARPAINGIRQVLNLNKSIYGLKQSGNNWN 116
            N  E +KAR IA G+SQVP +DY E+   +P  R +++R ++ HA Q +  VHQ DVK AYL AP+D  + +  P G+ +   NG + V  LNKS+YGLKQSG NWN
Sbjct:  255 NDEETYKARYIAKGYSQVPGVDYHETF--APTARMSSIRVLMQHAVQNDMIVHQMDVKAAYLNAPIDCDIFVEQPKGYEKEGGNGKKLVCKLNKSLYGLKQSGRNWN 359          
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 104 bits (260), Expect = 1.110e-23
Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 0
Query:    1 VNKTKTLPDNTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAVLAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWARPAINGIRQVLNLNKSIYGLKQSGNNWNRHIDA 121
            V K KT  +  ++R+KARL+A G++Q   +DY E  + SPVVR+TT+R++LA +   NW VHQ DVKTA+L+  L+E + M  P G+    +     V  L KSIYGLKQS   WN  ID 
Sbjct:  859 VFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSE--VFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPN--HVCKLKKSIYGLKQSARCWNNAIDT 975          
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Match: A0A2K3MT28_TRIPR (Uncharacterized protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MT28_TRIPR)

HSP 1 Score: 104 bits (260), Expect = 1.120e-23
Identity = 58/115 (50.43%), Postives = 71/115 (61.74%), Query Frame = 0
Query:    1 VNKTKTLPDNTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAVLAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWARPAINGIRQVLNLNKSIYGLKQSGNNW 115
            V K K   D TIER+KARL+A G++QV  IDY E+   SP  + TTLR +L  AA  NW +HQ DV+ A+L   L E+V M PP G  R    G   V  LNKS+YGLKQ+  NW
Sbjct:  720 VYKIKYKSDGTIERYKARLVAKGYTQVEGIDYQETF--SPTAKVTTLRCLLTVAASRNWFIHQLDVQNAFLHGDLHELVYMEPPPGLRR---QGENVVCRLNKSLYGLKQASRNW 829          
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Match: A0A6A7FPR6_9CRUS (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR6_9CRUS)

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-23
Identity = 54/116 (46.55%), Postives = 71/116 (61.21%), Query Frame = 0
Query:    1 VNKTKTLPDNTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAVLAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWARPAINGIRQVLNLNKSIYGLKQSGNNWN 116
            V   K  PDN  ++FKAR +A G+ Q+  +DY E+   SP  R T++R +L  A Q +  VHQ DVKTAYL A +D ++ M  P G+    + G   V  LNKS+YGLKQSG NWN
Sbjct:   18 VYAVKLGPDNE-DKFKARYVAKGYLQIDNVDYQETF--SPTARVTSIRMLLQLAVQEDLIVHQMDVKTAYLNANIDCLIYMQQPVGYIETDVKGQNLVCKLNKSLYGLKQSGRNWN 130          
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Match: A0A5N6N1H3_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6N1H3_9ASTR)

HSP 1 Score: 102 bits (255), Expect = 1.380e-23
Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 0
Query:    1 VNKTKTLPDNTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAVLAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWARPAINGIRQVLNLNKSIYGLKQSGNNW 115
            V K K   D TIER+KARL+A G++QV  IDY E+   SP  + TTLR +L  AA  NW  HQ DV+ A+L   L E+V M+PP G+ +    G   V  LNKS+YGLKQ+  NW
Sbjct:  159 VYKIKYNSDGTIERYKARLVAKGYTQVEGIDYKETF--SPTAKLTTLRCLLTVAAARNWFTHQLDVQNAFLHGDLHEVVYMTPPPGFLQ---KGDNVVCRLNKSLYGLKQASRNW 268          
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 104 bits (259), Expect = 1.390e-23
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 0
Query:   10 NTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAVLAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWARPAINGIRQVLNLNKSIYGLKQSGNNWNRHID 120
            N +E  KAR +A G++QV  IDY+E+   SP    T++R ++  AAQ N  VHQ DVKTA+L  P+D  + M  P G+   + NG++ V  L KS+YGLKQSG NWNR +D
Sbjct:  227 NGLETLKARYVAKGYNQVHGIDYEETF--SPTANITSIRILMQLAAQYNLTVHQMDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLD 335          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9067.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9JQ57_PARCT1.220e-2649.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HNY1_PARCT6.080e-2448.39Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A833XDW1_JUGRE6.560e-2448.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151UAG0_CAJCA8.680e-2446.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7KHG6_PARCT1.070e-2348.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9D6Q5_PARCT1.110e-2346.28Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2K3MT28_TRIPR1.120e-2350.43Uncharacterized protein n=1 Tax=Trifolium pratense... [more]
A0A6A7FPR6_9CRUS1.300e-2346.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6N1H3_9ASTR1.380e-2349.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HLY2_PARCT1.390e-2347.75Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 10..120
e-value: 4.7E-30
score: 105.0
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 3..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9067contigP-wetherbeei_contig9067:1917..2282 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9067.1.1mRNA_P-wetherbeei_contig9067.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig9067 1917..2282 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig9067.1.1 ID=prot_P-wetherbeei_contig9067.1.1|Name=mRNA_P-wetherbeei_contig9067.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
VNKTKTLPDNTIERFKARLIACGFSQVPCIDYDESMIHSPVVRHTTLRAV
LAHAAQANWPVHQKDVKTAYLKAPLDEIVCMSPPTGWARPAINGIRQVLN
LNKSIYGLKQSGNNWNRHIDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2