prot_P-wetherbeei_contig8390.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig8390.1.1
Unique Nameprot_P-wetherbeei_contig8390.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length174
Homology
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Match: A0A536SYM2_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SYM2_9PROT)

HSP 1 Score: 233 bits (593), Expect = 4.700e-74
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0
Query:    1 EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKELNVKPGEVAEMEMRLAGQEMTFEADGDDE-TYAPANYLTADASAEPSRFLEAEESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSAERIRQIEAKALEKMRKAM 168
            E+HEYILRNWR+VKVATTKAQRKLFFNLRSMKKGL  MS  DVGR+A+EL VKP EV EME RL+GQE+ FE + DDE TYAP +YL AD +AEP R LEAEESER+R EGL +AL +LD RSRRIVEARWLREKD  TLHDLA E+ VSAERIRQIEAKAL+KMRK +
Sbjct:  116 EMHEYILRNWRLVKVATTKAQRKLFFNLRSMKKGLAPMSQADVGRVAEELKVKPEEVVEMETRLSGQELAFEGERDDEATYAPVHYLAADEAAEPYRVLEAEESERVRAEGLQKALATLDARSRRIVEARWLREKDTATLHDLAAEFNVSAERIRQIEAKALDKMRKLL 284          
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Match: A0A1F4AZI7_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4AZI7_9PROT)

HSP 1 Score: 229 bits (583), Expect = 2.230e-72
Identity = 122/171 (71.35%), Postives = 145/171 (84.80%), Query Frame = 0
Query:    1 EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKELNVKPGEVAEMEMRLAGQEMTFEADGDDET-YAPANYLTADASAEPSRFLEAEESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSAERIRQIEAKALEKMRKAMGS 170
            EIHEYILRNWR++KVATTKAQRKLFFNLRSMK+G   MS +++GR+A+EL VKP EV EME RLAG+++ FE +  DET YAP +YL  DA AEPSR LEAEE ERL+++GL RAL SLDPRSRRI+ ARWL+EKDA TLH+LA E+KVSAERIRQIEAKA+EKMRK + +
Sbjct:  116 EIHEYILRNWRLIKVATTKAQRKLFFNLRSMKQGFAPMSSQEIGRVARELKVKPEEVVEMETRLAGRDVAFENENHDETGYAPVHYLATDADAEPSRVLEAEEDERLQSDGLKRALVSLDPRSRRIIAARWLKEKDAATLHELAAEFKVSAERIRQIEAKAMEKMRKLLAA 286          
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Match: A0A522VL63_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VL63_9PROT)

HSP 1 Score: 227 bits (579), Expect = 7.940e-72
Identity = 124/169 (73.37%), Postives = 141/169 (83.43%), Query Frame = 0
Query:    1 EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKELNVKPGEVAEMEMRLAGQEMTFEAD-GDDETYAPANYLTADASAEPSRFLEAEESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSAERIRQIEAKALEKMRKAM 168
            EIHEYILRNWR++KVATTKAQRKLFFNLRSMK GL  ++ E++ R+A+EL VKP EV EME RLAG E+ FEAD  DDE YAPA+YL AD  +EPSR LEA+E+ER    GL  AL SLDPRSRRI+E RWL+EKDA TLHDLA E+KVSAERIRQIEAKALEKM+KAM
Sbjct:  112 EIHEYILRNWRLIKVATTKAQRKLFFNLRSMKTGLAPLTREEIRRVARELKVKPEEVVEMETRLAGHELAFEADDSDDEAYAPAHYLAADPESEPSRILEAKEAERDGASGLRSALASLDPRSRRIIETRWLKEKDAATLHDLAAEFKVSAERIRQIEAKALEKMKKAM 280          
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Match: A0A0S8B092_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B092_9PROT)

HSP 1 Score: 226 bits (575), Expect = 2.670e-71
Identity = 119/173 (68.79%), Postives = 146/173 (84.39%), Query Frame = 0
Query:    1 EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKELNVKPGEVAEMEMRLAGQEMTFEADGDDETYAPANYLTADASAEPSRFLEAEESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSAERIRQIEAKALEKMRKAMGSLDA 173
            EIHEY+LRNWR+VKVATTKAQRKLFFNLRSMK GL  ++ +++ R+A  L VKP EV EME R++G+++ FE+D DDE+YAPA +L AD  AEPSR LEAE++E++R  GLA+AL+ LD RSRRI+EARWLREKD  TLH+LADEY VSAERIRQIEAKALEKMRKA+ + +A
Sbjct:  108 EIHEYVLRNWRLVKVATTKAQRKLFFNLRSMKSGLAPLTGDEIERVADALKVKPAEVVEMETRMSGRDLAFESDDDDESYAPAQFL-ADPEAEPSRLLEAEQTEQIRVAGLAKALDGLDARSRRIIEARWLREKDTATLHELADEYGVSAERIRQIEAKALEKMRKAIATAEA 279          
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Match: A0A1F4F342_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F342_9PROT)

HSP 1 Score: 224 bits (570), Expect = 1.890e-70
Identity = 122/169 (72.19%), Postives = 141/169 (83.43%), Query Frame = 0
Query:    1 EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKELNVKPGEVAEMEMRLAGQEMTFEADGDDE-TYAPANYLTADASAEPSRFLEAEESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSAERIRQIEAKALEKMRKAM 168
            EIHEY+LRNWR+VKVATTKAQRKLFFNLRSMK GL  +S +++ R+A +LNVKP EV EME RLAG+++ FEAD +DE  YAP +YL A   AEPSR LE EESER++  GL +AL  LDPRSRRI+EARWLREKD+ TLHDLA E+KVSAERIRQIEAKALEKMRK M
Sbjct:  116 EIHEYVLRNWRLVKVATTKAQRKLFFNLRSMKPGLAPLSGDEIERIATDLNVKPEEVTEMETRLAGRDVAFEADDNDEDVYAPVHYLAAGEDAEPSRQLEVEESERVQAAGLNKALAGLDPRSRRIIEARWLREKDSATLHDLAAEFKVSAERIRQIEAKALEKMRKVM 284          
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Match: A0A537CTW9_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CTW9_9PROT)

HSP 1 Score: 223 bits (567), Expect = 4.750e-70
Identity = 125/174 (71.84%), Postives = 143/174 (82.18%), Query Frame = 0
Query:    1 EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKELNVKPGEVAEMEMRLAGQEMTFEADGDDE-TYAPANYLTADASAEPSRFLEAEESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSAERIRQIEAKALEKMRKAMGSLDA 173
            EIHEYILRNWRMVK+ATTKAQRKLFFNLRSMK GL  ++  D+ R+A EL VKP EV EME RL+GQE+ FEAD DDE +YAPA YL AD  +EP R LEAEES R++  GL +AL SLDPRSRRI+EARWL+EKD  TLH+LA E+ VSAERIRQIE KALEKMRKA+G+ DA
Sbjct:  111 EIHEYILRNWRMVKLATTKAQRKLFFNLRSMKSGLAPLTRADIKRVAAELRVKPEEVVEMEKRLSGQEIAFEADDDDEDSYAPAQYL-ADHESEPYRVLEAEESARVQAAGLQKALASLDPRSRRIIEARWLKEKDGATLHELAAEFNVSAERIRQIETKALEKMRKAIGNPDA 283          
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Match: A0A1F4CXW2_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CXW2_9PROT)

HSP 1 Score: 220 bits (560), Expect = 5.130e-69
Identity = 124/169 (73.37%), Postives = 141/169 (83.43%), Query Frame = 0
Query:    1 EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKELNVKPGEVAEMEMRLAGQEMTFEADGDDE-TYAPANYLTADASAEPSRFLEAEESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSAERIRQIEAKALEKMRKAM 168
            EIHEYILRNWR+VKVATTKAQRKLFFNLRSMK GL  +S +DV R+A ELNVKP EV EME RL+GQE+ FE + DDE  +APA+YL AD++AEP R LEAEE ER R E L  AL  LDPRSRRI++ARWLREK+A TLHDLA E+KVSAERIRQ+EAKALEKMRK +
Sbjct:  118 EIHEYILRNWRLVKVATTKAQRKLFFNLRSMKSGLAPLSVDDVERVASELNVKPEEVVEMETRLSGQEIAFEGERDDEEAFAPADYL-ADSAAEPYRVLEAEEEERNRIENLKSALAVLDPRSRRIIQARWLREKNAATLHDLAGEFKVSAERIRQLEAKALEKMRKVI 285          
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Match: A0A537AF47_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AF47_9PROT)

HSP 1 Score: 218 bits (554), Expect = 3.260e-68
Identity = 122/169 (72.19%), Postives = 142/169 (84.02%), Query Frame = 0
Query:    1 EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKELNVKPGEVAEMEMRLAGQEMTFEADGDDE-TYAPANYLTADASAEPSRFLEAEESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSAERIRQIEAKALEKMRKAM 168
            EIHEYILRNWR+VKVATTKAQRKLFFNLRSMK+ L  +S  DV R+A  L VKP EV EME RL+G E+ FE + DDE +YAP +YL AD +AEP R LEAEESER+R++GL +AL +LDPRSRRIVEARWLREKD+ TLH+LA E+KVSAERIRQIEAKAL+KMRK +
Sbjct:  112 EIHEYILRNWRLVKVATTKAQRKLFFNLRSMKRDLAPLSTADVERVADALKVKPEEVVEMETRLSGHELAFEGERDDEESYAPVHYL-ADEAAEPYRVLEAEESERVRSDGLQKALATLDPRSRRIVEARWLREKDSATLHELAAEFKVSAERIRQIEAKALDKMRKLL 279          
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Match: A0A1F4EVJ7_9PROT (RNA polymerase sigma factor RpoH n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EVJ7_9PROT)

HSP 1 Score: 217 bits (552), Expect = 9.400e-68
Identity = 119/173 (68.79%), Postives = 140/173 (80.92%), Query Frame = 0
Query:    1 EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKELNVKPGEVAEMEMRLAGQEMTFEAD-GDDETYAPANYLTADASAEPSRFLEAEESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSAERIRQIEAKALEKMRKAMGSLD 172
            EIHEYILRNWR++KVATTKAQRKLFFNLRSMK+GL  ++ E++ R+A  L VKP EV EME RLAG+++ FEAD  DDE YAP +YL  D  +EPSR LEA+E+E     GL  AL  LDPRSRRIVEARWL+EK+A TLHDLA E+KVSAERIRQIEAKALE+MRKA+ + D
Sbjct:  112 EIHEYILRNWRLIKVATTKAQRKLFFNLRSMKQGLAPLNREEIRRVAAALKVKPEEVVEMETRLAGRDVAFEADDSDDEAYAPVHYLAVDPESEPSRILEAKENESAGAAGLRSALAVLDPRSRRIVEARWLKEKNAATLHDLAAEFKVSAERIRQIEAKALERMRKAIAAQD 284          
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Match: A0A1F3YM17_9PROT (RNA polymerase sigma factor RpoH n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YM17_9PROT)

HSP 1 Score: 216 bits (550), Expect = 2.060e-67
Identity = 118/171 (69.01%), Postives = 139/171 (81.29%), Query Frame = 0
Query:    1 EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKELNVKPGEVAEMEMRLAGQEMTFEADGDDE---TYAPANYLTADASAEPSRFLEAEESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSAERIRQIEAKALEKMRKAM 168
            EIHEYILRNWR+VKVATTKAQRKLFFNLRSMK+GL  +S ++VGR+A  L VKP EV EME RL G+++ FEAD +D+    YAP +YL AD   EPSR LEA+E+E +   GL RAL  LDPRSRRIVEARWL+EKD+ TLHDLA E+KVSAERIRQ+EAKA EKM+KA+
Sbjct:  112 EIHEYILRNWRLVKVATTKAQRKLFFNLRSMKRGLAPLSADEVGRVAAALRVKPEEVTEMETRLGGRDLAFEADDNDDEEKAYAPVHYLAADPGNEPSRLLEAKENETIGAAGLHRALAVLDPRSRRIVEARWLKEKDSATLHDLAAEFKVSAERIRQLEAKAFEKMKKAI 282          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8390.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A536SYM2_9PROT4.700e-7475.74RNA polymerase sigma factor RpoH n=1 Tax=Betaprote... [more]
A0A1F4AZI7_9PROT2.230e-7271.35RNA polymerase sigma factor RpoH n=1 Tax=Betaprote... [more]
A0A522VL63_9PROT7.940e-7273.37RNA polymerase sigma factor RpoH n=1 Tax=Betaprote... [more]
A0A0S8B092_9PROT2.670e-7168.79RNA polymerase sigma factor RpoH n=1 Tax=Betaprote... [more]
A0A1F4F342_9PROT1.890e-7072.19RNA polymerase sigma factor RpoH n=1 Tax=Betaprote... [more]
A0A537CTW9_9PROT4.750e-7071.84RNA polymerase sigma factor RpoH n=1 Tax=Betaprote... [more]
A0A1F4CXW2_9PROT5.130e-6973.37RNA polymerase sigma factor RpoH n=1 Tax=Betaprote... [more]
A0A537AF47_9PROT3.260e-6872.19RNA polymerase sigma factor RpoH n=1 Tax=Betaprote... [more]
A0A1F4EVJ7_9PROT9.400e-6868.79RNA polymerase sigma factor RpoH n=2 Tax=unclassif... [more]
A0A1F3YM17_9PROT2.060e-6769.01RNA polymerase sigma factor RpoH n=1 Tax=Betaprote... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availableGENE3D1.20.140.160coord: 17..170
e-value: 3.8E-16
score: 61.6
NoneNo IPR availablePANTHERPTHR30376SIGMA FACTOR RPOH HEAT SHOCK RELATEDcoord: 1..168
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 111..165
e-value: 5.19401E-8
score: 45.5582
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 138..153
score: 36.94
coord: 153..164
score: 59.09
coord: 118..130
score: 30.67
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 138..164
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 114..166
e-value: 3.7E-15
score: 55.2
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 75..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8390contigP-wetherbeei_contig8390:3..524 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8390.1.1mRNA_P-wetherbeei_contig8390.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig8390 3..524 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig8390.1.1 ID=prot_P-wetherbeei_contig8390.1.1|Name=mRNA_P-wetherbeei_contig8390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
EIHEYILRNWRMVKVATTKAQRKLFFNLRSMKKGLGTMSPEDVGRMAKEL
NVKPGEVAEMEMRLAGQEMTFEADGDDETYAPANYLTADASAEPSRFLEA
EESERLRTEGLARALESLDPRSRRIVEARWLREKDALTLHDLADEYKVSA
ERIRQIEAKALEKMRKAMGSLDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR007630RNA_pol_sigma70_r4
IPR013324RNA_pol_sigma_r3/r4-like