prot_P-wetherbeei_contig8179.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig8179.1.1
Unique Nameprot_P-wetherbeei_contig8179.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length168
Homology
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Match: D7G075_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G075_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 2.780e-97
Identity = 141/167 (84.43%), Postives = 156/167 (93.41%), Query Frame = 0
Query:    1 NADRVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALIMERLMISSDAFTASVCERCGLLGYAEWCQNCRSGANIAEIRLPYACKLLFQELQSMNVVPRLKLAEF 167
            +ADRV  CCQAL+E+GYSY+GKDML SGT GEPL+NY+F GPVFYQKLKHMVMDK+HARARGPRAVLTRQPTEGRSR+GGLRLGEMERDCLIGYGASALIMERLMISSDAFTA+VC+ CGLLGY+ WCQNCRS   +A+IRLPYACKLLFQELQSMN+VPRLKL +F
Sbjct:  285 SADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 451          
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Match: A0A812TJY5_SYMMI (DNA-directed RNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TJY5_SYMMI)

HSP 1 Score: 270 bits (689), Expect = 2.410e-88
Identity = 126/167 (75.45%), Postives = 147/167 (88.02%), Query Frame = 0
Query:    1 NADRVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALIMERLMISSDAFTASVCERCGLLGYAEWCQNCRSGANIAEIRLPYACKLLFQELQSMNVVPRLKLAEF 167
            NAD+VE  C+ L++ GYSY+GKD++ SG +GEPL +Y+F GPVFYQKLKHMVMDK+HAR+RGPRAVLTRQPTEGRSR+GGLRLGEMERDCLIGYGAS L+MERLMISSDAFTA+VCE CG+LGY  WCQ CR+G  ++ IRLPYACKLLFQELQSMN+  RL L +F
Sbjct:  149 NADKVEVACETLVKHGYSYVGKDIMTSGITGEPLQSYIFAGPVFYQKLKHMVMDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLVMERLMISSDAFTANVCEGCGMLGYEGWCQGCRNGDKMSNIRLPYACKLLFQELQSMNIATRLHLQDF 315          
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 285 bits (730), Expect = 7.730e-87
Identity = 136/167 (81.44%), Postives = 154/167 (92.22%), Query Frame = 0
Query:    1 NADRVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALIMERLMISSDAFTASVCERCGLLGYAEWCQNCRSGANIAEIRLPYACKLLFQELQSMNVVPRLKLAEF 167
            +ADRV AC  AL+E G+SY+GK+++ SGTSGEPLL Y+F GPVFYQKLKHMVMDK+HARARGPRAVLTRQPTEGRSR+GGLRLGEMERDCLIGYGAS+L+ ERLMISSDAFTA+VCERCGLLGYA WCQ+CRS   +A+IRLPYACKLLFQELQSMNV+P+LKL EF
Sbjct: 1031 SADRVVACSGALVENGFSYVGKEIITSGTSGEPLLTYIFQGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASSLLTERLMISSDAFTATVCERCGLLGYAGWCQSCRSSERMADIRLPYACKLLFQELQSMNVIPKLKLMEF 1197          
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 276 bits (706), Expect = 4.350e-84
Identity = 132/167 (79.04%), Postives = 148/167 (88.62%), Query Frame = 0
Query:    1 NADRVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALIMERLMISSDAFTASVCERCGLLGYAEWCQNCRSGANIAEIRLPYACKLLFQELQSMNVVPRLKLAEF 167
            NADRVE  C  L++ GYSY+GKD+L SG +GEPL +YVFMGPVFYQKLKHMVMDK+HARA+GPRAVLTRQPTEGRSR+GGLRLGEMERDCLIGYGAS LIMERLMISSDAFTA+VCE CGLLGY  WCQ CRSG  ++ IRLPYACKLLFQELQSMN+  RL+L ++
Sbjct:  872 NADRVEVSCATLVKHGYSYVGKDILTSGITGEPLESYVFMGPVFYQKLKHMVMDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLIMERLMISSDAFTANVCENCGLLGYEGWCQRCRSGDKVSSIRLPYACKLLFQELQSMNIATRLRLQDY 1038          
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Match: A0A7S1V8C7_9STRA (DNA-directed RNA polymerase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8C7_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.270e-83
Identity = 126/166 (75.90%), Postives = 142/166 (85.54%), Query Frame = 0
Query:    1 NADRVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALIMERLMISSDAFTASVCERCGLLGYAEWCQNCRSGANIAEIRLPYACKLLFQELQSMNVVPRLKLAE 166
            +AD  EA  +AL+  G +Y GKD++YSGTSGEPL  Y+F GPVFYQKLKHMV+DK HARARGPRAVLTRQPTEGRSR+GGLRLGEMERDCLI YGAS LIMERLM SSDAF+A+VC  CGLL Y  WCQ CRSG  +A+IRLPYACKLLFQELQSMNV+PRL+L +
Sbjct:  255 SADTAEAASEALIRNGLNYTGKDVMYSGTSGEPLNAYIFQGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSANVCMTCGLLQYENWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRLRLRD 420          
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Match: A0A7S3DSU4_9STRA (DNA-directed RNA polymerase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DSU4_9STRA)

HSP 1 Score: 255 bits (652), Expect = 2.500e-83
Identity = 124/166 (74.70%), Postives = 139/166 (83.73%), Query Frame = 0
Query:    1 NADRVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALIMERLMISSDAFTASVCERCGLLGYAEWCQNCRSGANIAEIRLPYACKLLFQELQSMNVVPRLKLAE 166
            +AD  EA  +AL+  G +Y GKD  YSGT+GE L  Y+F GPVFYQKLKHMV+DK HARARGPRAVLTRQPTEGRSR+GGLRLGEMERDCLI YGAS LIMERLM SSDAF+A+VC  CGLL Y  WCQ CRSG  +A+IRLPYACKLLFQELQSMNV+PRL+L +
Sbjct:  105 SADTAEAASEALIRNGLNYTGKDTFYSGTNGEALDGYIFSGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSANVCMTCGLLQYQNWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRLRLKD 270          
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Match: A0A7S2GFG3_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GFG3_9STRA)

HSP 1 Score: 255 bits (651), Expect = 7.420e-83
Identity = 123/170 (72.35%), Postives = 142/170 (83.53%), Query Frame = 0
Query:    1 NADRVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALIMERLMISSDAFTASVCERCGLLGY----AEWCQNCRSGANIAEIRLPYACKLLFQELQSMNVVPRLKLAE 166
            NAD+V    Q L+  G+SY+ KDML SG +GEPL  Y+FMGPVFYQKLKHMVMDK+HARARGPRAVLTRQPTEGRSR+GGLRLGEMERDCL+GYGA+ALI ERLM SSDAFTA VC++C L+GY      WCQNCRS  N+ +++LPYACKLLFQELQSMN+ P+L L E
Sbjct:  125 NADKVVEASQELVRHGFSYVAKDMLTSGITGEPLSAYIFMGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLVGYGAAALISERLMTSSDAFTAHVCKKCNLIGYLGEKGMWCQNCRSAENMTDMKLPYACKLLFQELQSMNITPKLHLEE 294          
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 273 bits (698), Expect = 2.120e-82
Identity = 130/167 (77.84%), Postives = 148/167 (88.62%), Query Frame = 0
Query:    1 NADRVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALIMERLMISSDAFTASVCERCGLLGYAEWCQNCRSGANIAEIRLPYACKLLFQELQSMNVVPRLKLAEF 167
            NAD+V   CQAL+++G+SY GKD+L SG +GEP+LNY+F GPVFYQKLKHMVMDK+HARARGPRA LTRQPTEGRSR+GGLRLGEMERDCLIGYGASALIMERLMISSDAFTA VCE CGLLGY  WCQ CR   +++ I +PYACKLLFQELQSMN+VPRL+L E+
Sbjct: 1015 NADKVTDICQALVDRGFSYCGKDILMSGINGEPVLNYIFAGPVFYQKLKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTAYVCEGCGLLGYQGWCQGCRRPDSMSSISVPYACKLLFQELQSMNIVPRLRLQEY 1181          
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Match: A0A8J6A225_GALPY (DNA-directed RNA polymerase n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6A225_GALPY)

HSP 1 Score: 251 bits (640), Expect = 4.660e-82
Identity = 114/164 (69.51%), Postives = 142/164 (86.59%), Query Frame = 0
Query:    4 RVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALIMERLMISSDAFTASVCERCGLLGYAEWCQNCRSGANIAEIRLPYACKLLFQELQSMNVVPRLKLAEF 167
            +V+  C+ L+  GY+YLGKD + SG +GEPL  Y++ GPV+YQKLKHMV+DK+HARARGPRAVLTRQPTEGRSR+GGLRLGEMERDCLIGYGAS L++ERLMISSDAF   VC +CGLLGY+ WC  C+S  +++ +R+PYACKLLFQELQSMN++PRLKL+++
Sbjct:   68 KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSKY 231          
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Match: M4C4I9_HYAAE (DNA-directed RNA polymerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4I9_HYAAE)

HSP 1 Score: 252 bits (643), Expect = 1.890e-81
Identity = 117/167 (70.06%), Postives = 142/167 (85.03%), Query Frame = 0
Query:    1 NADRVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALIMERLMISSDAFTASVCERCGLLGYAEWCQNCRSGANIAEIRLPYACKLLFQELQSMNVVPRLKLAEF 167
            +AD V  C + L++ G++Y GKD L SG +GEP+  Y+FMGP++YQKLKHMVMDK+HARARGPRAVLTRQPTEGRSR+GGLRLGEMERDCLIGYGAS L+MERLM+SSDAF+A VC+ C +LGY  WCQ+C+S   +  IR+PYACKLLFQELQ+MN+VPRL L E+
Sbjct:  143 SADHVLDCSRELVKNGFNYAGKDYLTSGITGEPIECYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLMERLMLSSDAFSADVCQGCRMLGYEGWCQHCKSEEKVVSIRIPYACKLLFQELQAMNIVPRLTLKEY 309          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8179.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G075_ECTSI2.780e-9784.43DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
A0A812TJY5_SYMMI2.410e-8875.45DNA-directed RNA polymerase n=1 Tax=Symbiodinium m... [more]
I2CNY0_NANGC7.730e-8781.44DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A7S3H3I2_9STRA4.350e-8479.04DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S1V8C7_9STRA1.270e-8375.90DNA-directed RNA polymerase n=2 Tax=Grammatophora ... [more]
A0A7S3DSU4_9STRA2.500e-8374.70DNA-directed RNA polymerase n=1 Tax=Amphiprora pal... [more]
A0A7S2GFG3_9STRA7.420e-8372.35DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
A0A835Z565_9STRA2.120e-8277.84DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A8J6A225_GALPY4.660e-8269.51DNA-directed RNA polymerase n=1 Tax=Galemys pyrena... [more]
M4C4I9_HYAAE1.890e-8170.06DNA-directed RNA polymerase n=1 Tax=Hyaloperonospo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1800.10RNA polymerase alpha subunit dimerisation domaincoord: 84..167
e-value: 7.2E-29
score: 101.5
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 5..166
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 5..165
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 1..83
e-value: 1.5E-28
score: 101.7
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 6..77
e-value: 4.2E-26
score: 91.9
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 79..163
e-value: 1.1E-33
score: 115.4
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 5..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8179contigP-wetherbeei_contig8179:1586..2878 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8179.1.1mRNA_P-wetherbeei_contig8179.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig8179 1586..2878 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig8179.1.1 ID=prot_P-wetherbeei_contig8179.1.1|Name=mRNA_P-wetherbeei_contig8179.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
NADRVEACCQALLEKGYSYLGKDMLYSGTSGEPLLNYVFMGPVFYQKLKH
MVMDKVHARARGPRAVLTRQPTEGRSREGGLRLGEMERDCLIGYGASALI
MERLMISSDAFTASVCERCGLLGYAEWCQNCRSGANIAEIRLPYACKLLF
QELQSMNVVPRLKLAEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007120DNA-dir_RNAP_su2_dom
IPR007641RNA_pol_Rpb2_7
IPR015712DNA-dir_RNA_pol_su2