prot_P-wetherbeei_contig8168.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig8168.1.1
Unique Nameprot_P-wetherbeei_contig8168.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length173
Homology
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.910e-52
Identity = 95/172 (55.23%), Postives = 122/172 (70.93%), Query Frame = 0
Query:    1 LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLARTYHIDVNSDAFGTDPGRPGQRYLTRGTIDACRNDDALRAELEGEFERLQEDQRLLVNIFAAKGQQASSTGT-NLPVNIRRLIWNAQKLFKVDTGMPTDLAPGYVVETVRDLCGRLLVVGGQ 171
            LEAVSAKYDGTLR+QNN+VVQFLYGEDGMDGVWVE+Q   IL +S+ D  + Y IDVN   FG      GQRYLTR  +D  + D+ LR EL  E E+L+ DQ+ LV IFAA+G +  +T    +PVNI+RL+WNAQK+F++     +D++P YV+  VR+LC  L VV G+
Sbjct:  891 LEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQRFDILLMSKKDFRKAYEIDVNHAKFGFSQHVTGQRYLTREVVDEAKTDETLRIELADELEQLRMDQKNLVVIFAARGPEEGATPVAQVPVNIKRLVWNAQKMFQIKPYGESDMSPTYVIRRVRELCEGLSVVTGE 1062          
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 2.650e-52
Identity = 94/172 (54.65%), Postives = 123/172 (71.51%), Query Frame = 0
Query:    1 LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLARTYHIDVNSDAFGTDPGRPGQRYLTRGTIDACRNDDALRAELEGEFERLQEDQRLLVNIFAAKGQQASSTGT-NLPVNIRRLIWNAQKLFKVDTGMPTDLAPGYVVETVRDLCGRLLVVGGQ 171
            LEAVSAKYDGTLR+QNN+VVQFLYGEDGMDGVWVE+Q   IL +S+ D  + Y IDVN   FG      GQRYLTR  +D  + D+ LR EL  E E+L+ DQ+ LV IFAA+G +  +T    +PVNI+RL+WN+QK+F++ +   +D++P YV+  VR+LC  L VV G+
Sbjct:  890 LEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQRFDILLMSKKDFRKAYEIDVNHAKFGFSQHVTGQRYLTREVVDEAKTDETLRIELADELEQLRMDQKNLVVIFAARGPEEGATPVAQVPVNIKRLVWNSQKMFQIKSYGESDMSPTYVIRRVRELCEGLSVVTGE 1061          
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.490e-47
Identity = 94/175 (53.71%), Postives = 116/175 (66.29%), Query Frame = 0
Query:    1 LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLARTYHIDVNSDAFGTDPG---RPGQRYLTRGTIDACRNDDALRAELEGEFERLQEDQRLLVNIFAAKG-QQASSTGTNLPVNIRRLIWNAQKLFKVDTGMPTDLAPGYVVETVRDLCGRLLVVGGQ 171
            LEAVSAKYDGTLR+QNN+VVQFLYGEDGMDGVWVE+Q   IL LSR      Y +DV  D FG  P    R    YLT    D C++++ +R  LE E  +L++D  +L+ IF+ KG ++++S    LPVNI RLIWNAQK F VDT   T L P  +V  VR LCGR++VV G 
Sbjct:  879 LEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQRYDILGLSRNGFETLYALDVTDDDFGIHPKLQQRQVGAYLTTEMADYCKSNEDVREALEEELAQLRDDHAMLLKIFSTKGSEESASPQAQLPVNIHRLIWNAQKKFDVDTNAETQLDPLKIVRDVRALCGRMIVVTGN 1053          
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Match: A0A6G0X279_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X279_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.220e-35
Identity = 75/172 (43.60%), Postives = 106/172 (61.63%), Query Frame = 0
Query:    1 LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLARTYHIDVNSDAFGTDPGRPGQRYLTRGTIDACRNDDALRAELEGEFERLQEDQRLLVNIFAAKGQ-QASSTGTNLPVNIRRLIWNAQKLFKVDTGMPTDLAPGYVVETVRDLCGRLLVVGGQ 171
            +E+V A+YDGT+RD N +++QFLYGEDGMD VWVE+Q     TL+RA     + ID   DA GT P  P + Y+    I   + +   +  L  E+ +LQ+D+  L  I A++GQ Q S     +PVN++RLI NAQ+LF +    PT L P +V+  VR+LCG ++VV G 
Sbjct:  739 MESVMARYDGTVRDSNGEIIQFLYGEDGMDAVWVEKQNFDGHTLNRAKFEAKFKIDPYDDALGTVPHCPDELYMDPQIIQDIQTNPVTQQLLREEYLQLQKDRLNLRVILASRGQGQESDHAAQVPVNVKRLIQNAQQLFSISMLHPTTLHPEHVINGVRELCGDIIVVKGD 910          
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Match: W7U1E6_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1E6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.300e-35
Identity = 72/171 (42.11%), Postives = 101/171 (59.06%), Query Frame = 0
Query:    1 LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLARTYHIDVNSDAFGTDPGRPGQRYLTRGTIDACRNDDALRAELEGEFERLQEDQRLLVNIFAAKGQQASSTGTNLPVNIRRLIWNAQKLFKVDTGMPTDLAPGYVVETVRDLCGRLLVVGGQ 171
            +E+V AKYD ++R     V+QFLYGEDGMD VW+E+Q+L  L L+R      Y +DV  D+FG  PGRPG+ YLT     ACR D A    L+ E  +L +D+  L  +  A+  +   T T LPVN+ RLI  A++  ++     +DL P  V+  +RDLC + +VV G 
Sbjct:  881 MESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTAR-PRGKETDTYLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGD 1050          
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Match: K3WV53_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV53_GLOUD)

HSP 1 Score: 134 bits (338), Expect = 2.370e-33
Identity = 70/172 (40.70%), Postives = 104/172 (60.47%), Query Frame = 0
Query:    1 LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLARTYHIDVNSDAFGTDPGRPGQRYLTRGTIDACRNDDALRAELEGEFERLQEDQRLLVNIFAAKGQ-QASSTGTNLPVNIRRLIWNAQKLFKVDTGMPTDLAPGYVVETVRDLCGRLLVVGGQ 171
            +E+V A+YDGT+R+   +++QFLYGEDGMD VWVE+Q      L++ +    Y  D+ S+  G  P  P Q YL    I   R +   +  L  E  +LQ+D+  L  I A++GQ Q S     +PVNI+RL+ NAQ+LF VD   P+ L P  ++E V++LC +++VV G+
Sbjct:  880 MESVMARYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHRLNKREFDHKYVFDITSEYLGCVPKCPDQLYLEPDIIKDIRTNQQTQQILREEIAQLQKDRVNLRVILASRGQGQESDNAAQVPVNIKRLLENAQQLFSVDMQKPSSLHPTRIIEGVKELCKKIIVVQGE 1051          
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Match: H3GA78_PHYRM (DNA-directed RNA polymerase subunit n=30 Tax=Oomycota TaxID=4762 RepID=H3GA78_PHYRM)

HSP 1 Score: 133 bits (334), Expect = 8.290e-33
Identity = 68/172 (39.53%), Postives = 101/172 (58.72%), Query Frame = 0
Query:    1 LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLARTYHIDVNSDAFGTDPGRPGQRYLTRGTIDACRNDDALRAELEGEFERLQEDQRLLVNIFAAKGQ-QASSTGTNLPVNIRRLIWNAQKLFKVDTGMPTDLAPGYVVETVRDLCGRLLVVGGQ 171
            +E+V  +YDGT+R+   +++QFLYGEDGMD VWVE+Q      L++    + Y  D + +  G  P  P Q YL    I   R +   +  L  E  +LQ+D+  L  I A++GQ Q S     +PVNIRRL+ NAQ+LF +D   P+ L P  ++E V++LC +++VV G 
Sbjct:  895 MESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVQFDKKYVFDPSDEELGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELAQLQKDRVNLRVILASRGQGQESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKELCKKIIVVQGD 1066          
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Match: A0A3R6ZSG6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZSG6_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.100e-32
Identity = 70/172 (40.70%), Postives = 104/172 (60.47%), Query Frame = 0
Query:    1 LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLARTYHIDVNSDAFGTDPGRPGQRYLTRGTIDACRNDDALRAELEGEFERLQEDQRLLVNIFAAKGQ-QASSTGTNLPVNIRRLIWNAQKLFKVDTGMPTDLAPGYVVETVRDLCGRLLVVGGQ 171
            +E+V ++YDGT+R+ N +++QFLYGEDGMD VWVE+Q     TL+RA     + +D   D  GT P  P + Y+    I   +++   +  L  E+ +LQ+D+  L  I  ++GQ Q S     +PVN+RRLI NAQ+LF +    PT L P  +++ VRDLC  ++VV G 
Sbjct:  240 MESVMSRYDGTVRNSNGEIIQFLYGEDGMDAVWVEKQNFDGHTLNRAKFEAKFKLDPFDDQLGTVPHCPDELYMDPQIITDIQSNPTTQLFLRDEYIQLQKDRLNLRVILGSRGQGQESDQAAQVPVNLRRLIQNAQQLFSISLLHPTTLNPQNIIQGVRDLCREIVVVQGD 411          
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Match: A0A425CUV4_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CUV4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.110e-32
Identity = 70/172 (40.70%), Postives = 104/172 (60.47%), Query Frame = 0
Query:    1 LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLARTYHIDVNSDAFGTDPGRPGQRYLTRGTIDACRNDDALRAELEGEFERLQEDQRLLVNIFAAKGQ-QASSTGTNLPVNIRRLIWNAQKLFKVDTGMPTDLAPGYVVETVRDLCGRLLVVGGQ 171
            +E+V ++YDGT+R+ N +++QFLYGEDGMD VWVE+Q     TL+RA     + +D   D  GT P  P + Y+    I   +++   +  L  E+ +LQ+D+  L  I  ++GQ Q S     +PVN+RRLI NAQ+LF +    PT L P  +++ VRDLC  ++VV G 
Sbjct:  865 MESVMSRYDGTVRNSNGEIIQFLYGEDGMDAVWVEKQNFDGHTLNRAKFEAKFKLDPFDDQLGTVPHCPDELYMDPQIITDIQSNPTTQLFLRDEYIQLQKDRLNLRVILGSRGQGQESDQAAQVPVNLRRLIQNAQQLFSISLLHPTTLNPQNIIQGVRDLCREIVVVQGD 1036          
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Match: B7G9I2_PHATC (DNA-directed RNA polymerase subunit (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9I2_PHATC)

HSP 1 Score: 132 bits (333), Expect = 1.120e-32
Identity = 70/172 (40.70%), Postives = 104/172 (60.47%), Query Frame = 0
Query:    1 LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLARTYHIDVNSDAFGTDPGRPGQRYLTRGTIDACRNDDALRAELEGEFERLQEDQRLLVNIFAAK-GQQASSTGTNLPVNIRRLIWNAQKLFKVDTGMPTDLAPGYVVETVRDLCGRLLVVGGQ 171
            +E V A+YDGTLR  + ++VQFLYGEDGMD VW+E+Q    LTL++ +  + +  D +S  FG D    G  +L    I+ CR D  ++A L+ E E L+EDQ +L  +  ++   + S   +  P N+RR+I NA + F++D   PTDL P  V++ V +L  RL+VV G 
Sbjct:  791 METVMARYDGTLRTSSGQIVQFLYGEDGMDAVWIEKQNFDSLTLAKPEFNKRFLFDTSSPEFGHD--EQGIPFLEPDVIEECRRDPDIQATLDQEIEILREDQAILRIVMRSREAGRESDDSSYAPGNVRRVIHNAMRQFRIDKSKPTDLHPTEVIQIVNNLLERLIVVVGN 960          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8168.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE1.910e-5255.23DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI2.650e-5254.65DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CHC4_9STRA2.490e-4753.71DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A6G0X279_9STRA1.220e-3543.60DNA-directed RNA polymerase subunit n=3 Tax=Aphano... [more]
W7U1E6_9STRA4.300e-3542.11DNA-directed RNA polymerase subunit n=2 Tax=Monodo... [more]
K3WV53_GLOUD2.370e-3340.70DNA-directed RNA polymerase subunit n=1 Tax=Globis... [more]
H3GA78_PHYRM8.290e-3339.53DNA-directed RNA polymerase subunit n=30 Tax=Oomyc... [more]
A0A3R6ZSG6_9STRA1.100e-3240.70DNA-directed RNA polymerase (Fragment) n=2 Tax=Aph... [more]
A0A425CUV4_9STRA1.110e-3240.70DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
B7G9I2_PHATC1.120e-3240.70DNA-directed RNA polymerase subunit (Fragment) n=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 82..102
NoneNo IPR availableGENE3D6.20.50.80coord: 4..46
e-value: 1.4E-11
score: 45.7
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..169
IPR007075RNA polymerase Rpb1, domain 6PFAMPF04992RNA_pol_Rpb1_6coord: 29..170
e-value: 2.5E-33
score: 115.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8168contigP-wetherbeei_contig8168:148..1120 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8168.1.1mRNA_P-wetherbeei_contig8168.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig8168 148..1120 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig8168.1.1 ID=prot_P-wetherbeei_contig8168.1.1|Name=mRNA_P-wetherbeei_contig8168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
LEAVSAKYDGTLRDQNNKVVQFLYGEDGMDGVWVERQALHILTLSRADLA
RTYHIDVNSDAFGTDPGRPGQRYLTRGTIDACRNDDALRAELEGEFERLQ
EDQRLLVNIFAAKGQQASSTGTNLPVNIRRLIWNAQKLFKVDTGMPTDLA
PGYVVETVRDLCGRLLVVGGQV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007075RNA_pol_Rpb1_6