prot_P-wetherbeei_contig51778.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig51778.1.1
Unique Nameprot_P-wetherbeei_contig51778.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length163
Homology
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Match: UPI00115E8D80 (LysR family transcriptional regulator n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115E8D80)

HSP 1 Score: 178 bits (452), Expect = 1.300e-52
Identity = 91/162 (56.17%), Postives = 119/162 (73.46%), Query Frame = 0
Query:    2 LSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFVRHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCFITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYAYGLSDEFEAEVLA 163
            LSLRAL YFVA AE  SVT AA+++ +SQPS+SAA+AQLE  L VQLF+RHHAKGLSLT SG R+L +AR+LL HA E    AG +GE  +G V  GCF TLAP ++PGL++    + P + L++ EGNQ E+LE + +GR E+ALTY   ++DEF  ++LA
Sbjct:    3 LSLRALSYFVAAAEESSVTAAAQRLNISQPSISAAVAQLEQQLSVQLFIRHHAKGLSLTPSGQRVLNEARALLKHAEEFRVSAGMLGEGLQGNVELGCFSTLAPIIIPGLLSALGSQLPGITLTVSEGNQEEMLEGILSGRIELALTYDLAVTDEFHTQLLA 164          
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Match: A0A212RJN2_9PROT (DNA-binding transcriptional regulator, LysR family n=1 Tax=Arboricoccus pini TaxID=1963835 RepID=A0A212RJN2_9PROT)

HSP 1 Score: 177 bits (450), Expect = 2.040e-52
Identity = 90/162 (55.56%), Postives = 123/162 (75.93%), Query Frame = 0
Query:    2 LSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFVRHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCFITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYAYGLSDEFEAEVLA 163
            +SLRA+RY VATAEAG++T AARQ+ +SQPS+SAAIAQ+E  L VQLFVRHHA+G++LT +G R++ +AR LLAHA +  Q A  +G   RGE+S GCF TLA   +PGL+A FA + P +++ + EG+QA+++E L TGR E+AL+Y Y + DE E+  LA
Sbjct:    4 ISLRAIRYMVATAEAGNITEAARQLNISQPSISAAIAQVETELGVQLFVRHHARGVTLTHAGHRVVAEARLLLAHAEDFAQTAQTLGHAIRGEISVGCFPTLAARFMPGLLAAFAAKQPAISIRLFEGDQAQIMEALITGRTEIALSYDYAVPDEVESTPLA 165          
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Match: A0A848JXE4_9HYPH (DNA-binding transcriptional LysR family regulator n=7 Tax=Xanthobacteraceae TaxID=335928 RepID=A0A848JXE4_9HYPH)

HSP 1 Score: 174 bits (441), Expect = 5.550e-51
Identity = 85/161 (52.80%), Postives = 122/161 (75.78%), Query Frame = 0
Query:    2 LSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFVRHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCFITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYAYGLSDEFEAEVL 162
            +SLRAL+Y VA A+ G+VT AARQ+ VSQPS+SAAIAQ EA L++ LF+RHHA+G+SLT +G R + +AR LLAHAR+  Q A A+G+  RGE+S GCF+T+AP  +P L+A FAE  P + + +EEG+Q E+ + + +GR E+A++Y Y + ++F  E+L
Sbjct:    3 VSLRALKYVVAAADLGNVTEAARQLNVSQPSISAAIAQTEAELRIPLFIRHHARGISLTPAGQRYVNEARHLLAHARDFAQSAQALGDTLRGEISLGCFLTIAPRFMPALLARFAEVQPGITVKLEEGDQKEIFDGILSGRLEIAVSYGYAVPEDFSGELL 163          
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Match: A0A858X679_9HYPH (LysR family transcriptional regulator n=1 Tax=Starkeya sp. ORNL1 TaxID=2709380 RepID=A0A858X679_9HYPH)

HSP 1 Score: 172 bits (435), Expect = 4.660e-50
Identity = 87/162 (53.70%), Postives = 123/162 (75.93%), Query Frame = 0
Query:    2 LSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFVRHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCFITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYAYGLSDEFEAEVLA 163
            +SLRALRY VATAE+G++T AAR++ VSQPS+SAAIAQ EAG  VQ+FVRHHAKG++ T++G R++ +AR LL HAR+  Q A AM +  RGE++ GCF T+A   +P L++GFAE +P + +S++EG+Q  +L+ L +GR E+AL+Y +   +E  AE LA
Sbjct:    3 ISLRALRYVVATAESGNLTEAARRLNVSQPSISAAIAQFEAGCGVQIFVRHHAKGVTTTIAGTRIINEARLLLNHARDFGQNARAMADEVRGEIAVGCFWTIATHFMPSLLSGFAESHPGITVSLDEGDQQLILDALISGRTEIALSYEFARPEEIVAEPLA 164          
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Match: UPI001BCCF713 (LysR substrate-binding domain-containing protein n=1 Tax=Ancylobacter lacus TaxID=2579970 RepID=UPI001BCCF713)

HSP 1 Score: 170 bits (430), Expect = 2.630e-49
Identity = 87/162 (53.70%), Postives = 120/162 (74.07%), Query Frame = 0
Query:    2 LSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFVRHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCFITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYAYGLSDEFEAEVLA 163
            +SLRALRY VATAE G++T AARQ+ VSQPS+SAAIAQ EA    Q+FVRHHAKG++ T++G R++ +AR LL HAR+  Q A AM +  RGE+S GCF T+A   +PGL++ FAE +P + +S++EG+Q  +L+ L  GR E+AL+Y +   +E  AE+LA
Sbjct:    3 ISLRALRYIVATAECGNLTEAARQLNVSQPSISAAIAQFEAECGAQIFVRHHAKGVTPTIAGTRIINEARLLLNHARDFGQNARAMADEVRGEISVGCFWTIATHFMPGLLSSFAESHPGITVSLDEGDQQLILDALVAGRTEIALSYDFARPEEIAAELLA 164          
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Match: A0A4D7B0V8_9HYPH (LysR family transcriptional regulator n=1 Tax=Phreatobacter stygius TaxID=1940610 RepID=A0A4D7B0V8_9HYPH)

HSP 1 Score: 169 bits (429), Expect = 4.340e-49
Identity = 88/163 (53.99%), Postives = 119/163 (73.01%), Query Frame = 0
Query:    1 RLSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFVRHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCFITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYAYGLSDEFEAEVLA 163
            R+SLR LRY V TAEAG+VT AAR++ VSQPSVSAAIAQ+E    VQ+FVRHHA+G++LT +G RL+  AR LL+HAR+ E+   ++G   +GE++ G FITL    +PGL+ GFA  +P + + +EEG+Q E+L+ L +GR E+AL+Y Y L DE   E LA
Sbjct:    2 RISLRVLRYVVTTAEAGNVTEAARRLHVSQPSVSAAIAQIEEQFGVQVFVRHHARGMTLTSAGQRLVHDARLLLSHARDFEENTRSLGSALQGEITVGSFITLTARFMPGLLTGFALLHPRIQVKMEEGDQQEILDGLLSGRVEIALSYDYALPDEVLGETLA 164          
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Match: A0A316C908_PSESE (LysR family transcriptional regulator n=2 Tax=Pseudaminobacter salicylatoxidans TaxID=93369 RepID=A0A316C908_PSESE)

HSP 1 Score: 166 bits (420), Expect = 7.310e-48
Identity = 84/162 (51.85%), Postives = 120/162 (74.07%), Query Frame = 0
Query:    1 RLSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFVRHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCFITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYAYGLSDEFEAEVL 162
            RLSLR L Y V TA+ GSVT AAR++ VSQPS+SAAIA +E  +  Q+F+RHHA+G++LT++G R++  AR LL HAR+  +   ++ +   GE++ G F+TLA   +PGL+A FA+R P +++++EEGNQ E+L+ L +GR E+AL+YAY LSDE   EVL
Sbjct:    2 RLSLRTLNYVVTTADTGSVTEAARRLHVSQPSISAAIAHMEEEIGAQIFIRHHARGVTLTVAGRRVVNDARLLLNHARDFGRSISSLSDGLSGEITVGSFVTLATRFMPGLLAEFAQRVPGISINLEEGNQQEILDGLVSGRMEMALSYAYALSDEVVGEVL 163          
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Match: A0A1W6ZT82_9HYPH (LysR family transcriptional regulator n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZT82_9HYPH)

HSP 1 Score: 166 bits (419), Expect = 1.300e-47
Identity = 82/161 (50.93%), Postives = 121/161 (75.16%), Query Frame = 0
Query:    2 LSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFVRHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCFITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYAYGLSDEFEAEVL 162
            LSLR LRY VA A++G VT AAR++ VSQPS+S+AIA+LEA + V LF+RHHA+G++LT  G+R++ +AR LL HA++  Q A  +G+  +GE+S GCF+TLA   +PGL+AGFA++YP + + ++EG+Q E++  ++ GR E+AL Y   + DE +AE L
Sbjct:    3 LSLRQLRYVVAAADSGHVTDAARRLNVSQPSISSAIAELEAEIGVPLFIRHHARGVTLTPVGERVVNEARLLLKHAQDFTQNAIELGDALKGEISVGCFLTLAIRFMPGLLAGFAQKYPGITVQLQEGDQEEMISMMQAGRIELALAYNLAVPDEIDAEPL 163          
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Match: UPI001A987606 (LysR substrate-binding domain-containing protein n=1 Tax=Rhizobium bangladeshense TaxID=1138189 RepID=UPI001A987606)

HSP 1 Score: 165 bits (417), Expect = 1.670e-47
Identity = 86/163 (52.76%), Postives = 120/163 (73.62%), Query Frame = 0
Query:    1 RLSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFVRHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCFITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYAYGLSDEFEAEVLA 163
            +LSLRALRY V TA+ GSVT AAR++ VSQPS+SAA+AQ+EA L +Q+FVRHHA+G++L+ +G R +  AR LL HAR+    A A+G+  RGE+  G F TLA   +P L+AGFA+RYP +++ +EEG+Q E++  L +GR E+AL+Y + + DE   E LA
Sbjct:    2 QLSLRALRYVVETADQGSVTEAARKLNVSQPSISAALAQVEAQLGIQIFVRHHARGVTLSAAGQRYVNDARRLLNHARDFANNAQALGDSLRGEIVVGSFPTLAMRFMPALLAGFAKRYPGISVRLEEGDQQEIIAGLTSGRIELALSYNFAVPDEIIGEKLA 164          
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Match: A0A316GJH5_9HYPH (LysR family transcriptional regulator n=1 Tax=Aminobacter sp. AP02 TaxID=2135737 RepID=A0A316GJH5_9HYPH)

HSP 1 Score: 165 bits (417), Expect = 1.910e-47
Identity = 83/162 (51.23%), Postives = 119/162 (73.46%), Query Frame = 0
Query:    2 LSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFVRHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCFITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYAYGLSDEFEAEVLA 163
            LS+RAL Y VATA+AGSV+G+A+Q+ VSQPS+SAAIAQ+EA +   LFVRHHA+G++ T +G R + +AR LL HAR+  + A A+     GEV+ G F+TLA   +PG++A FA R P +A+++EEGNQ +++E + +GR E+A+ YAY + +E   E LA
Sbjct:    3 LSMRALSYIVATADAGSVSGSAKQMNVSQPSISAAIAQIEATIGTALFVRHHARGMTTTAAGQRFINEARILLTHARDFARSAEALTSEVSGEVTVGSFVTLATRFMPGILAEFARRMPGIAINLEEGNQQDIIEGVTSGRLELAMAYAYAVPEEVVGEHLA 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51778.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00115E8D801.300e-5256.17LysR family transcriptional regulator n=1 Tax=Telm... [more]
A0A212RJN2_9PROT2.040e-5255.56DNA-binding transcriptional regulator, LysR family... [more]
A0A848JXE4_9HYPH5.550e-5152.80DNA-binding transcriptional LysR family regulator ... [more]
A0A858X679_9HYPH4.660e-5053.70LysR family transcriptional regulator n=1 Tax=Star... [more]
UPI001BCCF7132.630e-4953.70LysR substrate-binding domain-containing protein n... [more]
A0A4D7B0V8_9HYPH4.340e-4953.99LysR family transcriptional regulator n=1 Tax=Phre... [more]
A0A316C908_PSESE7.310e-4851.85LysR family transcriptional regulator n=2 Tax=Pseu... [more]
A0A1W6ZT82_9HYPH1.300e-4750.93LysR family transcriptional regulator n=1 Tax=Pseu... [more]
UPI001A9876061.670e-4752.76LysR substrate-binding domain-containing protein n... [more]
A0A316GJH5_9HYPH1.910e-4751.23LysR family transcriptional regulator n=1 Tax=Amin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000847Transcription regulator HTH, LysRPRINTSPR00039HTHLYSRcoord: 30..40
score: 46.78
coord: 19..30
score: 37.91
coord: 40..51
score: 45.08
IPR000847Transcription regulator HTH, LysRPFAMPF00126HTH_1coord: 4..63
e-value: 1.2E-19
score: 70.0
IPR000847Transcription regulator HTH, LysRPROSITEPS50931HTH_LYSRcoord: 2..60
score: 26.058714
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..84
e-value: 3.5E-23
score: 83.1
IPR005119LysR, substrate-bindingPFAMPF03466LysR_substratecoord: 89..163
e-value: 8.4E-14
score: 51.5
NoneNo IPR availableGENE3D3.40.190.10coord: 91..163
e-value: 8.2E-23
score: 82.5
NoneNo IPR availablePANTHERPTHR30126HTH-TYPE TRANSCRIPTIONAL REGULATORcoord: 4..162
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 90..162
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 2..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51778contigP-wetherbeei_contig51778:63..551 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51778.1.1mRNA_P-wetherbeei_contig51778.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig51778 63..551 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig51778.1.1 ID=prot_P-wetherbeei_contig51778.1.1|Name=mRNA_P-wetherbeei_contig51778.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
RLSLRALRYFVATAEAGSVTGAARQVRVSQPSVSAAIAQLEAGLKVQLFV
RHHAKGLSLTLSGDRLLVQARSLLAHARELEQFAGAMGEPQRGEVSAGCF
ITLAPFLLPGLMAGFAERYPEVALSIEEGNQAEVLEQLRTGRCEVALTYA
YGLSDEFEAEVLA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000847Tscrpt_reg_HTH_LysR
IPR036388WH-like_DNA-bd_sf
IPR005119LysR_subst-bd
IPR036390WH_DNA-bd_sf