prot_P-wetherbeei_contig50761.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig50761.1.1
Unique Nameprot_P-wetherbeei_contig50761.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length186
Homology
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Match: UPI001F00EDC8 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Vibrio marisflavi TaxID=1216040 RepID=UPI001F00EDC8)

HSP 1 Score: 193 bits (491), Expect = 1.790e-57
Identity = 105/178 (58.99%), Postives = 132/178 (74.16%), Query Frame = 0
Query:    1 LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDSLTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSVMRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGIIPIQAEIPNSDLRLLPGMYASLDVLLPD 178
            LD+  E A+LQ++EA +PAA A  KR   L ++  VSQ D DDAQ+ Y SL AQ  SLKATI++R I+APF GVLGIR V  GQY+QPG EIV L+D SVMR+ F I Q D +KV++GQE+D   DAYP+ VFKG I AIEP+V  QSG+I IQA+IPNSD +LL GM+A  ++LLP+
Sbjct:  100 LDSDIEIANLQSSEANLPAAAAKYKRYKDLYQKGSVSQEDFDDAQASYLSLVAQIKSLKATIDQRDIKAPFSGVLGIRNVYLGQYVQPGTEIVQLEDTSVMRLVFTIPQNDISKVQVGQEVDISVDAYPNQVFKGAIKAIEPAVDSQSGLIQIQADIPNSDGKLLSGMFARANILLPE 277          
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Match: UPI00048B7D33 (efflux RND transporter periplasmic adaptor subunit n=2 Tax=Shewanella TaxID=22 RepID=UPI00048B7D33)

HSP 1 Score: 186 bits (473), Expect = 9.830e-55
Identity = 96/186 (51.61%), Postives = 138/186 (74.19%), Query Frame = 0
Query:    1 LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDSLTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSVMRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGIIPIQAEIPNSDLRLLPGMYASLDVLLPDRGKKTVGP 186
            LD+  EKA+L++ + Q+PAA AD KR T+L K+  VS+ DLD+++SKY +L A S SL ATI RR I+APF G++GIR VN G+YLQ G EIV L+D+S M++RF I Q   +++  GQ++    DAYP++ F+G ISAIEP+V +QSG+I +QA+IPN+D +L  GM+A +D+LLP+  ++ V P
Sbjct:  100 LDSKVEKANLKSKQVQLPAAEADFKRLTKLYKQNSVSKQDLDNSESKYLALLADSESLSATIGRREIKAPFSGLVGIRNVNLGEYLQTGTEIVRLEDISTMKIRFTIPQTQLSRIATGQKVHVYVDAYPTEPFEGVISAIEPAVFYQSGLIQVQAQIPNTDAKLRSGMFAKVDILLPELAEQVVLP 285          
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Match: B0TJQ4_SHEHH (Efflux transporter, RND family, MFP subunit n=7 Tax=Shewanella TaxID=22 RepID=B0TJQ4_SHEHH)

HSP 1 Score: 185 bits (470), Expect = 2.760e-54
Identity = 96/186 (51.61%), Postives = 137/186 (73.66%), Query Frame = 0
Query:    1 LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDSLTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSVMRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGIIPIQAEIPNSDLRLLPGMYASLDVLLPDRGKKTVGP 186
            LD+  EKA+L++ + Q+PAA AD KR ++L K+  VS+ DLD++QSKY +L A S SL ATI RR IRAPF G++GIR VN G+YLQ G EIV L+D+S M++RF I Q   +++  GQ++    DAYP++ F+G ISAIEP+V +QSG+I +QA IPN+D +L  GM+A +D++LP+  ++ V P
Sbjct:  100 LDSKVEKANLKSKQVQLPAAEADFKRLSKLYKQNSVSKQDLDNSQSKYLALMADSESLSATIGRREIRAPFAGLVGIRNVNLGEYLQTGSEIVRLEDISTMKIRFTIPQTQLSRIATGQKVHVYVDAYPTEPFEGVISAIEPAVFYQSGLIQVQARIPNTDAKLRSGMFAKVDIMLPELTQQVVLP 285          
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Match: UPI0019280CB6 (efflux RND transporter periplasmic adaptor subunit n=2 Tax=Shewanella TaxID=22 RepID=UPI0019280CB6)

HSP 1 Score: 183 bits (465), Expect = 1.550e-53
Identity = 97/186 (52.15%), Postives = 135/186 (72.58%), Query Frame = 0
Query:    1 LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDSLTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSVMRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGIIPIQAEIPNSDLRLLPGMYASLDVLLPDRGKKTVGP 186
            LD+  EKA+L++ + Q+PAA AD KR T+L K+  VS+ DLD+++SKY +L A S SL ATIERR I APF G++GIR VN G+YLQ G EIV L+D+S M++RF I Q     +  GQ +    DAYP++ F+G ISAIEP+V +QSG+I +QA+IPN+D +L  GM+A +D+LLP+  ++ V P
Sbjct:  100 LDSKVEKANLRSKQVQLPAAEADFKRLTKLYKQNSVSKQDLDNSESKYLALLADSESLSATIERREISAPFAGLVGIRNVNLGEYLQTGTEIVRLEDISTMKIRFTIPQTQLPHIATGQTVHVYVDAYPTEPFEGIISAIEPAVFYQSGLIQVQAQIPNTDSKLRSGMFAKVDILLPELVEQIVLP 285          
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Match: U4DXS4_9VIBR (Multidrug efflux transporter VexA n=6 Tax=Vibrio TaxID=662 RepID=U4DXS4_9VIBR)

HSP 1 Score: 182 bits (463), Expect = 2.340e-53
Identity = 95/177 (53.67%), Postives = 131/177 (74.01%), Query Frame = 0
Query:    1 LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDSLTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSVMRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGIIPIQAEIPNSDLRLLPGMYASLDVLLP 177
            LD+  E+A+L++T+A++PAA A  KR   L K+  VS+   DDAQ+ Y SL+A   SLKA+IERR I+APF GV+GIR V  GQYLQPG +IV L+D SVMR+RF + Q D +++ IGQ++D + DAYP   F+G ISAIEP+V  QSG++ +QA+IPN+D RL  GM+A  +++LP
Sbjct:   93 LDSEVERANLKSTQAKLPAAQAKFKRYAGLYKKGSVSKEAYDDAQAAYLSLSADIESLKASIERREIKAPFAGVVGIRNVYLGQYLQPGTDIVRLEDTSVMRLRFTVPQTDISRINIGQQVDIKVDAYPEGSFEGSISAIEPAVSVQSGLVQVQADIPNNDGRLRSGMFARANIILP 269          
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Match: D4ZCT3_SHEVD (HlyD family secretion domain protein n=4 Tax=Shewanella TaxID=22 RepID=D4ZCT3_SHEVD)

HSP 1 Score: 180 bits (456), Expect = 3.420e-52
Identity = 97/186 (52.15%), Postives = 133/186 (71.51%), Query Frame = 0
Query:    1 LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDSLTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSVMRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGIIPIQAEIPNSDLRLLPGMYASLDVLLPDRGKKTVGP 186
            LD+S EKA+L++   Q+PAA AD KR   L K+R +S+ DLD++Q+KY +L A   SLKATI+RR I APFGG++GIR VN G+YLQ G +IV L+D+S M++RF I Q    ++  GQ I+   DAYP   F+G+ISAIEP+V +QSG+I IQA+IPN D +L  GM+A + +LLP+   + V P
Sbjct:  100 LDSSVEKANLKSKMVQLPAAEADYKRLVLLYKQRSISKQDLDNSQAKYLALKADIESLKATIDRRDINAPFGGLIGIRSVNLGEYLQTGTDIVRLEDISTMKIRFTIPQTQLPRISKGQTINVYVDAYPEHPFEGKISAIEPAVFYQSGLIQIQAKIPNIDAKLRSGMFARVAILLPEMTNQFVLP 285          
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Match: A0A291TXR8_9GAMM (Efflux transporter periplasmic adaptor subunit n=6 Tax=Aeromonas TaxID=642 RepID=A0A291TXR8_9GAMM)

HSP 1 Score: 179 bits (455), Expect = 4.380e-52
Identity = 97/186 (52.15%), Postives = 131/186 (70.43%), Query Frame = 0
Query:    1 LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDSLTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSVMRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGIIPIQAEIPNSDLRLLPGMYASLDVLLPDRGKKTVGP 186
            LD+S EKA+LQA+ A++PAA A  +R   L K+  +S+  LDDA++ Y SL A   SLKATI RR +RAPFGGV+G+R V  GQYLQPG +IV L+D SVMR+RF + Q D +K+ +GQ I    DAYP   F G I+AIEP+V +QSG+I +QA+IPN+D +L  GM+A   ++LP   ++ V P
Sbjct:  100 LDSSVEKANLQASLAKLPAARAKYERFQNLFKKSSISKDQLDDAEASYRSLEADIESLKATIARREVRAPFGGVVGLRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQTDISKITLGQIIKINVDAYPQTQFDGHITAIEPAVNYQSGLIQVQADIPNNDGQLRSGMFARASIILPTVKEQMVIP 285          
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Match: A0A5Q4ZWI7_9GAMM (Multidrug resistance protein MdtA n=1 Tax=Aliivibrio wodanis TaxID=80852 RepID=A0A5Q4ZWI7_9GAMM)

HSP 1 Score: 179 bits (454), Expect = 5.190e-52
Identity = 93/186 (50.00%), Postives = 134/186 (72.04%), Query Frame = 0
Query:    1 LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDSLTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSVMRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGIIPIQAEIPNSDLRLLPGMYASLDVLLPDRGKKTVGP 186
            LD+  EKA+L++T+A++PAA A  KR   L K+  +S+   D+A++ Y SL+A   S+KA+IERR I+APF G++GIR V  GQYLQP  +IV L+D SVMR+RF + Q D +++ IGQ+ID   D+YP+D FKG ISAIEP+V  QSG+I +QA+IPN+  +L  GM+A  +++LP +  + V P
Sbjct:   93 LDSKVEKANLKSTQARLPAAEAKYKRYKGLYKKGSISKEAYDEAEANYYSLSADIESMKASIERREIKAPFSGIVGIRNVYLGQYLQPSTDIVRLEDSSVMRLRFTVPQTDISRINIGQDIDISVDSYPNDTFKGSISAIEPAVNIQSGLIQVQADIPNNGGKLRSGMFARAEIILPTQENQVVIP 278          
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Match: A0A193KEM7_9VIBR (Efflux transporter periplasmic adaptor subunit n=6 Tax=Vibrio TaxID=662 RepID=A0A193KEM7_9VIBR)

HSP 1 Score: 179 bits (454), Expect = 5.880e-52
Identity = 91/186 (48.92%), Postives = 126/186 (67.74%), Query Frame = 0
Query:    1 LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDSLTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSVMRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGIIPIQAEIPNSDLRLLPGMYASLDVLLPDRGKKTVGP 186
            LD+  EKA+LQ+ EA+ PA++A  KR   L+K+  +SQ D DDA++ Y SL A    LKATI+RR + APF GV+GIR VN G+Y+Q G  I  L+D+SVMRMRF + Q D +++ IGQ I  + D+YP   F G ISAIEP++ +QSG++ +QAEIPN+   L  GM+A   ++LP    + V P
Sbjct:  100 LDSDVEKANLQSAEARYPASIAKYKRYKGLIKKGAISQADFDDAEASYLSLKADIAGLKATIDRRDVNAPFAGVIGIRGVNLGEYMQAGSRIARLEDISVMRMRFTVSQNDISRINIGQAIRIKVDSYPGSTFDGTISAIEPAINYQSGLLQVQAEIPNTQGELRSGMFARAQIVLPKLQDQVVLP 285          
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Match: B8CHT6_SHEPW (HlyD family secretion protein n=6 Tax=Shewanella TaxID=22 RepID=B8CHT6_SHEPW)

HSP 1 Score: 179 bits (454), Expect = 6.810e-52
Identity = 94/186 (50.54%), Postives = 134/186 (72.04%), Query Frame = 0
Query:    1 LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDSLTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSVMRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGIIPIQAEIPNSDLRLLPGMYASLDVLLPDRGKKTVGP 186
            LD+  EKA+L++ + Q+PAA  D KR T+L K+  VS+ DLD+++SKY +L A S SL ATI RR I+APF G++GIR VN G+YLQ G EIV L+D+S M++RF I Q    ++  GQ +    DAYP++ F+G ISAIEP+V +QSG+I +QA+IPN+D +L  GM+A +D+ LP+  ++ V P
Sbjct:  100 LDSKVEKANLKSKQVQLPAASEDFKRLTKLYKQNSVSKQDLDNSESKYLALVADSESLSATIGRREIKAPFAGLVGIRNVNLGEYLQTGTEIVRLEDISTMKIRFTIPQTQLPRIAKGQPVHVYVDAYPTEPFEGVISAIEPAVFYQSGLIQVQAQIPNTDSKLRSGMFAKVDIQLPELTEQIVLP 285          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig50761.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F00EDC81.790e-5758.99efflux RND transporter periplasmic adaptor subunit... [more]
UPI00048B7D339.830e-5551.61efflux RND transporter periplasmic adaptor subunit... [more]
B0TJQ4_SHEHH2.760e-5451.61Efflux transporter, RND family, MFP subunit n=7 Ta... [more]
UPI0019280CB61.550e-5352.15efflux RND transporter periplasmic adaptor subunit... [more]
U4DXS4_9VIBR2.340e-5353.67Multidrug efflux transporter VexA n=6 Tax=Vibrio T... [more]
D4ZCT3_SHEVD3.420e-5252.15HlyD family secretion domain protein n=4 Tax=Shewa... [more]
A0A291TXR8_9GAMM4.380e-5252.15Efflux transporter periplasmic adaptor subunit n=6... [more]
A0A5Q4ZWI7_9GAMM5.190e-5250.00Multidrug resistance protein MdtA n=1 Tax=Aliivibr... [more]
A0A193KEM7_9VIBR5.880e-5248.92Efflux transporter periplasmic adaptor subunit n=6... [more]
B8CHT6_SHEPW6.810e-5250.54HlyD family secretion protein n=6 Tax=Shewanella T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.30.170coord: 79..175
e-value: 5.1E-24
score: 86.2
NoneNo IPR availableGENE3D1.10.287.470Helix hairpin bincoord: 2..68
e-value: 1.9E-9
score: 39.6
NoneNo IPR availablePANTHERPTHR30469MULTIDRUG RESISTANCE PROTEIN MDTAcoord: 1..182
NoneNo IPR availablePANTHERPTHR30469:SF11BLL4320 PROTEINcoord: 1..182
NoneNo IPR availableSUPERFAMILY111369HlyD-like secretion proteinscoord: 2..173
IPR006143RND efflux pump, membrane fusion proteinTIGRFAMTIGR01730TIGR01730coord: 4..181
e-value: 3.5E-40
score: 135.9
IPR032317RND efflux pump, membrane fusion protein, barrel-sandwich domainPFAMPF16576HlyD_D23coord: 60..170
e-value: 2.3E-22
score: 79.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig50761contigP-wetherbeei_contig50761:2..559 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig50761.1.1mRNA_P-wetherbeei_contig50761.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig50761 2..559 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig50761.1.1 ID=prot_P-wetherbeei_contig50761.1.1|Name=mRNA_P-wetherbeei_contig50761.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
LDTSKEKADLQATEAQIPAALADLKRKTQLVKERVVSQTDLDDAQSKYDS
LTAQSISLKATIERRSIRAPFGGVLGIRKVNRGQYLQPGDEIVSLQDLSV
MRMRFLIGQKDFAKVKIGQEIDARFDAYPSDVFKGRISAIEPSVKFQSGI
IPIQAEIPNSDLRLLPGMYASLDVLLPDRGKKTVGP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006143RND_pump_MFP
IPR032317HlyD_D23