prot_P-wetherbeei_contig18208.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig18208.1.1
Unique Nameprot_P-wetherbeei_contig18208.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length416
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18208.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 1.9E-4
score: 19.4
coord: 127..154
e-value: 4.9E-4
score: 18.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 9.437737
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 121..155
score: 8.845827
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..121
e-value: 1.5E-23
score: 85.7
coord: 122..249
e-value: 4.7E-16
score: 61.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 250..416
e-value: 2.3E-18
score: 68.7
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 16..154
e-value: 2.0E-11
score: 43.6
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..175
coord: 124..413

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18208contigP-wetherbeei_contig18208:111..1358 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18208.1.1mRNA_P-wetherbeei_contig18208.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig18208 111..1358 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig18208.1.1 ID=prot_P-wetherbeei_contig18208.1.1|Name=mRNA_P-wetherbeei_contig18208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=416bp
MEAARIRPNAVTFGAAINGLAGAGDVVGMLAMLERMEEMEIRPTVVVFNA
CINCCSEGAGRVDGIVDTTLALLKRMRAAGCKPNAISYTAAIKTCAAVAD
GAQAVKLLEAMRADAFVGGVTESAFLTAMAALSKAGDASGALRLLQEMRE
AGVSGGNVKACNFALAACAQAGDSAGALLGLLDMRRCGIAPNDISFLTAM
TACVKRADVARARKVLAAAEAAAAAVAALSGADVVEATKEREGGCAILST
RLFNVFLNVVADAGGVEEAGAVLSRMRRDGGLITPDAYSFSACLKACLAS
GDTERSAVQALDFLWQMAADGISPEAGEGLCHRLAMRACGAAGDAAAVLR
LLDEFLVLRLGMDAERRAFQVAATACSRAAGSGAGVAVLQRMRQAGHKPS
ADLYNAVLTALTRGHD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long