prot_P-wetherbeei_contig1129.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1129.1.1
Unique Nameprot_P-wetherbeei_contig1129.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length151
Homology
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 4.850e-67
Identity = 97/141 (68.79%), Postives = 122/141 (86.52%), Query Frame = 0
Query:    5 LLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 145
            +LFEDIF V KLNPDGKKFDRVNRL CKG+TY+ +LLLD NC+IY V EG+++TFV+ASTLDL G PDDGTY+ L  G EV+LAD+YEYVMHGRV++++   + KV+V ASFGGLLMRL+G+QRH+A+I VDSRV+CL+R+
Sbjct:    4 VLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPL--GDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142          
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.760e-60
Identity = 93/141 (65.96%), Postives = 114/141 (80.85%), Query Frame = 0
Query:    5 LLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 145
            +LFED+F V +LNP GKKFDRVNRLACK +T+E +LLLDIN EIY+V + DK++ VL+STL LDGAPDDGTYR ++   E TLA +YEYVMHGRVFKY  +   +V+V ASFGGLLMRL+GEQRHL  I +D R+Y LIR+
Sbjct:    6 ILFEDLFQVTQLNPTGKKFDRVNRLACKAVTFEMDLLLDINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEH--EETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIRQ 144          
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD)

HSP 1 Score: 177 bits (450), Expect = 9.690e-55
Identity = 84/141 (59.57%), Postives = 107/141 (75.89%), Query Frame = 0
Query:    6 LFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRKQ 146
            LFEDIF V ++NPDGKKFD+V R+ CKG++YE EL LDIN E+Y + + +K TF L STLDL+G PDDGTY   +Q  + TL D+Y+Y M+G+VF+Y+H   N V + ASFGGLLM L GEQRHL  I  D+R+YCL+RKQ
Sbjct:    5 LFEDIFEVRQVNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTY---NQSGKPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRKQ 142          
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A7S2U8S9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8S9_9STRA)

HSP 1 Score: 176 bits (447), Expect = 3.360e-54
Identity = 86/144 (59.72%), Postives = 109/144 (75.69%), Query Frame = 0
Query:    2 AQHLLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 145
            A+  LFEDIF V  LNP+GKKF+RVNRLA  G T+E +LLLDINCEIY V+EGDK+T VLASTL LDG+PDD  +      +E TLAD Y+YVMHGR+F   +  +  V + ASFGGLLMRL+G+QRHL+++  D R+Y L++K
Sbjct:    5 ARVTLFEDIFEVTALNPEGKKFERVNRLAATGTTFECDLLLDINCEIYKVLEGDKMTLVLASTLSLDGSPDDH-FSFQPNSTEPTLADNYDYVMHGRIFDVGYKKDGVVVIAASFGGLLMRLTGDQRHLSNVMPDMRLYVLLKK 147          
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A7S2E8I0_TRICV (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E8I0_TRICV)

HSP 1 Score: 174 bits (440), Expect = 3.650e-53
Identity = 88/144 (61.11%), Postives = 107/144 (74.31%), Query Frame = 0
Query:    2 AQHLLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 145
            A+  LFEDIF V  LNPD K FDRVNR+A  G T++ +LLLDINCEIY++ EGDKIT VLASTL+LDG PDD  +       E TLAD YEYVMHGRVF   +  E  + + ASFGGLLMRL+G+QRHL+S++ D R+Y LI+K
Sbjct:    3 ARVTLFEDIFLVKTLNPDRKVFDRVNRIAADGTTFDCDLLLDINCEIYNLTEGDKITLVLASTLNLDGTPDDH-FSYAPNPGEPTLADNYEYVMHGRVFDVAYKGEGVIVIAASFGGLLMRLTGDQRHLSSVQPDMRLYVLIKK 145          
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.000e-52
Identity = 82/141 (58.16%), Postives = 105/141 (74.47%), Query Frame = 0
Query:    6 LFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRKQ 146
            LFEDIF V +LNP+GKKFD+V R+  KG++YE EL LDIN E++ + + DK TF L STLDL+G PDDG Y   +Q  + TL D+Y+Y M+G++F+Y H   N V + ASFGGLLMRL GEQRHL  +  DSR+YCL+RKQ
Sbjct:   41 LFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIY---NQSGKATLLDRYDYGMYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRKQ 178          
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA)

HSP 1 Score: 171 bits (432), Expect = 5.650e-52
Identity = 83/140 (59.29%), Postives = 102/140 (72.86%), Query Frame = 0
Query:    6 LFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 145
            LFEDIF V +LNPDGKKF R+NR+   G T++ +LLLD N EIY + E +KIT VL+STL LDG PDDG Y   DQ  E T+AD YEYVMHGRVF   +  +  + V  SFGGLLMRL+G+QRHL ++R D R+Y LI+K
Sbjct:    7 LFEDIFVVKQLNPDGKKFSRINRIQATGTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEY---DQSGEPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKK 143          
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A7R9WD29_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WD29_9STRA)

HSP 1 Score: 171 bits (432), Expect = 6.210e-52
Identity = 85/140 (60.71%), Postives = 103/140 (73.57%), Query Frame = 0
Query:    6 LFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 145
            LFEDIF V  LNPD K FDRVNR+A  G T+E +LLLD+NCEIY + E +KITFVLASTL+LDG PDD  +       E TLAD YEYVMHGR+F   +  E  + + ASFGGLLMRL+G+QRHL+ I+ D R+Y LI+K
Sbjct:    8 LFEDIFEVTTLNPDRKVFDRVNRIAATGTTFECDLLLDVNCEIYDLRESNKITFVLASTLNLDGTPDDH-FSYAPNPGEPTLADNYEYVMHGRIFDVAYKGEGVIVIAASFGGLLMRLTGDQRHLSQIQPDMRLYVLIKK 146          
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: A0A7S1GJQ4_CYCTE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJQ4_CYCTE)

HSP 1 Score: 169 bits (429), Expect = 2.010e-51
Identity = 84/144 (58.33%), Postives = 108/144 (75.00%), Query Frame = 0
Query:    2 AQHLLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 145
            A+  LFEDIF V  LNPDGKKF+RVNRLA  G T+E +LLLD+NCEIY+V +GDKIT VLASTL LDG+P D  +      +E TLAD YEYVMHGR+F  ++  +  V + AS+GGLLMRL+G+QRHL+ +  D R++ L++K
Sbjct:    8 AKVTLFEDIFEVTALNPDGKKFERVNRLAATGTTFECDLLLDLNCEIYNVKDGDKITLVLASTLHLDGSPADH-FSFDPNATEPTLADNYEYVMHGRIFDVSYKKDGIVVISASYGGLLMRLTGDQRHLSQVLPDMRLFLLLKK 150          
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Match: B8CGC8_THAPS (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8CGC8_THAPS)

HSP 1 Score: 169 bits (429), Expect = 2.140e-51
Identity = 85/146 (58.22%), Postives = 109/146 (74.66%), Query Frame = 0
Query:    2 AQHLLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYSVMEGDKITFVLASTLDLDGAPDDGT-YR-MLDQGSEVTLADQYEYVMHGRVFKYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRK 145
            A+  LFEDIF +  LNP+GKKFD VNRL+  G T+E +LLLD NC+IYS++EG+K+T VLASTL+LDG PDD T Y       +E+TLAD YEYVMHGRVF  ++  +  V +  SFGGLL RL+G+QRHL+S+  D R+Y LI+K
Sbjct:    7 ARVTLFEDIFEITHLNPEGKKFDLVNRLSATGTTFECDLLLDYNCQIYSLLEGEKMTLVLASTLNLDGTPDDHTSYNPATSHNNELTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSSVLPDMRLYVLIKK 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1129.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM46_ECTSI4.850e-6768.79DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CD84_9STRA2.760e-6065.96DNA-directed RNA polymerases I, II, and III subuni... [more]
K3X3H5_GLOUD9.690e-5559.57DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2U8S9_9STRA3.360e-5459.72DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2E8I0_TRICV3.650e-5361.11DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024G723_9STRA1.000e-5258.16Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A7S1BC37_9STRA5.650e-5259.29DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7R9WD29_9STRA6.210e-5260.71DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1GJQ4_CYCTE2.010e-5158.33DNA-directed RNA polymerases I, II, and III subuni... [more]
B8CGC8_THAPS2.140e-5158.22DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 3..145
e-value: 4.4E-49
score: 179.0
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 8..145
e-value: 9.9E-49
score: 165.1
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..147
e-value: 7.8E-47
score: 156.9
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..145
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 7..147
e-value: 6.1E-50
score: 171.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 4..145
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1129contigP-wetherbeei_contig1129:161..1599 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1129.1.1mRNA_P-wetherbeei_contig1129.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1129 99..1787 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1129.1.1 ID=prot_P-wetherbeei_contig1129.1.1|Name=mRNA_P-wetherbeei_contig1129.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MAQHLLFEDIFSVNKLNPDGKKFDRVNRLACKGLTYETELLLDINCEIYS
VMEGDKITFVLASTLDLDGAPDDGTYRMLDQGSEVTLADQYEYVMHGRVF
KYNHVAENKVEVLASFGGLLMRLSGEQRHLASIRVDSRVYCLIRKQLRVG
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold