prot_P-wetherbeei_contig1096.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1096.2.1
Unique Nameprot_P-wetherbeei_contig1096.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length152
Homology
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Match: D7FT81_ECTSI (RPOL4c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT81_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.350e-33
Identity = 66/147 (44.90%), Postives = 99/147 (67.35%), Query Frame = 0
Query:    7 EDAGNAATLNFGKEF--EDVQCVTNSEVAIILDKQKKHYDALDITASPAFTATLMHVKRFSSAADD-PVQAITLLRQALEEFEAYSADRGGLQKLHQFEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVIRSQQHGRL 150
            +D  NA  L FG E   +D+ C++N+EV+++L+KQ+ +Y+  DI  +PAF+ T+ +VKRF        + A + LR+AL++FE +    G   +LHQFEI+Q+ANL+ ADS  EEV ALIPS+G +  +ED+E IL ++R  QH RL
Sbjct:    5 DDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFH--EGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRL 149          
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Match: A0A835YSR6_9STRA (HRDC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.500e-28
Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 0
Query:    1 MLSQEREDAGNAATLNFGKEFEDVQCVTNSEVAIILDKQKKHYDALDITASPAFTATLMHVKRFSSAADDPVQAITLLRQALEEFEAYSADRGGLQKLHQFEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVIRSQQHGR 149
            M   +  +  N  TL FG  FE++QC+T++EV  IL   K H    D+  + A+T T+ HVKRF +A D+     T LRQALE FE    D+G  + LH +EIV L NL+ ADS+ +E  ALIPS+ +KF +ED+E +LD+IR     R
Sbjct:    1 MFQDDLLETENVNTLKFGPGFEEIQCLTHTEVYQILTS-KTH----DVQRTQAYTKTIEHVKRFGTADDEKHAITTELRQALETFER-DTDQG-TETLHSYEIVSLCNLMQADSTVDEAIALIPSLSRKFKEEDIEALLDIIRKANAAR 142          
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Match: A0A024TL56_9STRA (RPOL4c domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TL56_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.220e-18
Identity = 59/150 (39.33%), Postives = 88/150 (58.67%), Query Frame = 0
Query:    1 MLSQEREDAGNAATLNFGKEFEDVQCVTNSEVAIILDKQKKHYDALDITASPAFTATLMHVKRFSSAADDPVQ---AITLLRQAL--EEFEAYSADRGGLQ---KLHQFEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVI 142
            M  Q   D  +AA LN G++F+   C++N+EVA+IL+KQK  Y++ +   +  F  T  +V+RFS    DPV    ++T LR+AL   EF   S D        +L +FEI  L+NL   +   EE  ALIPS+ +KF +ED+++IL +I
Sbjct:    6 MGRQHAMDTEDAAELNLGEDFQQETCLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGT-KDPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNLNPEEP--EEAMALIPSLNKKFTEEDIDEILQII 152          
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Match: A0A6A3KCE9_9STRA (RPOL4c domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KCE9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.200e-17
Identity = 54/137 (39.42%), Postives = 81/137 (59.12%), Query Frame = 0
Query:    8 DAGNAATLNFGKEFEDVQCVTNSEVAIILDKQKKHYDALDITASPAFTATLMHVKRFSSAADDPVQAITL--LRQALEEFEAYSADRGGLQKLHQFEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVI 142
            ++ +AA LN G++FED  C++N+EVAIIL+KQK +Y     T + AF  T  +V RF+   D  V   ++  LR+AL+       D   + +L +FEI  L+NL      AEE  ALIPS+ + F   ++E+IL +I
Sbjct:   10 ESTDAAALNIGEDFEDEVCLSNAEVAIILEKQKINYVEQKKTFTRAFKKTESYVLRFTGTRDPLVNQASVIELREALQSISFEHDDE--VHRLEEFEIACLSNL--NPEGAEEAVALIPSLSKHFTDNEIEEILGMI 142          
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Match: H3GHD4_PHYRM (RPOL4c domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=H3GHD4_PHYRM)

HSP 1 Score: 81.6 bits (200), Expect = 9.190e-17
Identity = 51/140 (36.43%), Postives = 82/140 (58.57%), Query Frame = 0
Query:    8 DAGNAATLNFGKEFEDVQCVTNSEVAIILDKQKKHYDALDITASPAFTATLMHVKRFSSAADDPVQ---AITLLRQALEEFEAYSADRGGL--QKLHQFEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVI 142
            D  +AA LN G +F +  C++N+EVA+IL+KQK  Y+  +   +  F  T  +V+RFS    DPV    ++T LR+AL        + G     +L +FEI  L+NL   +   EE  ALIPS+ ++F ++++E+IL ++
Sbjct:   10 DTEDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGT-KDPVANQASVTELREALMSLAFQREEEGETVEYRLEEFEIACLSNLNPEE--VEEAVALIPSLHKRFAEDEIEEILGIV 146          
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Match: F0W0U0_9STRA (Uncharacterized protein AlNc14C5G725 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0U0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.190e-17
Identity = 52/140 (37.14%), Postives = 85/140 (60.71%), Query Frame = 0
Query:    8 DAGNAATLNFGKEFEDVQCVTNSEVAIILDKQKKHYDALDITASPAFTATLMHVKRFSSAADDPVQ---AITLLRQALEE--FEAYSADRGGLQKLHQFEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVI 142
            D  +AA LN G++F D  C++N+EVA+IL+KQK+ Y+  +   +  F  T  +V+RFS    DPV    ++T LR+AL    F     +R    +L +FEI  L+NL   +   EE  +LIPS+ +++ +E++E+IL ++
Sbjct:   10 DTEDAAELNLGEDFRDETCLSNAEVAVILEKQKQDYENQEKQLTNVFQKTYSYVQRFSGT-KDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNLNPEE--VEEAVSLIPSLSKRYAEEEIEEILGIV 146          
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Match: A0A067CZ22_SAPPC (RPOL4c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CZ22_SAPPC)

HSP 1 Score: 81.3 bits (199), Expect = 1.420e-16
Identity = 55/143 (38.46%), Postives = 85/143 (59.44%), Query Frame = 0
Query:    8 DAGNAATLNFGKEFEDVQCVTNSEVAIILDKQKKHYDALDITASPAFTATLMHVKRFSSAADDPVQ---AITLLRQAL--EEFEAYSADRGGLQ---KLHQFEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVI 142
            D  +AA L  G++F+   C++N+EVA+IL+KQK  Y++ + T +  F  T  +V+RFS    DPV    ++T LR+AL   EF     D        +L +FEI  L+NL   +   EE  ALIPS+ ++F ++D+E+IL +I
Sbjct:   11 DTEDAAELILGEDFQGETCLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGT-KDPVSNQASVTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNLNPEEP--EEAMALIPSLQKRFTEDDIEEILSII 150          
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Match: A0A3M6VV57_9STRA (RPOL4c domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VV57_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.570e-16
Identity = 52/141 (36.88%), Postives = 84/141 (59.57%), Query Frame = 0
Query:    8 DAGNAATLNFGKEFEDVQCVTNSEVAIILDKQKKHYDALDITASPAFTATLMHVKRFSSAADDPVQ---AITLLRQALEEFEAYSADRGGLQ---KLHQFEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVI 142
            D  +AA LN G +F +  C++N+EVA+IL+KQK  Y+  +   +  F  T  +V+RFS    DPV    ++T LR+AL    A+  +  G     +L +FEI  L+NL   +   EE  ALIPS+ ++F ++++E+IL ++
Sbjct:   10 DTEDAAELNLGGDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGT-KDPVANQASVTELREALMSL-AFQREEDGETVEYRLEEFEIACLSNLNPEE--VEEAVALIPSLQKRFAEDEIEEILGIV 146          
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Match: A0A8K1FR52_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR52_PYTOL)

HSP 1 Score: 79.3 bits (194), Expect = 7.190e-16
Identity = 50/140 (35.71%), Postives = 82/140 (58.57%), Query Frame = 0
Query:    8 DAGNAATLNFGKEFEDVQCVTNSEVAIILDKQKKHYDALDITASPAFTATLMHVKRFSSAADDPVQ---AITLLRQALEEFEAYSADRGGLQ--KLHQFEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVI 142
            D  +AA LN G +F    C++N+EVA+IL+KQK  Y+  +   +  F  T  +V+RFS    DPV    ++T LR+AL        + G +   +L +FEI  L+NL   +   EE  AL+PS+ ++F ++++E+IL ++
Sbjct:   10 DTEDAAELNLGDDFRHETCLSNAEVAVILEKQKSDYENQEKQLTGVFQKTYSYVQRFSGT-KDPVSNQASVTELREALMSLAFQREEDGQVTEVRLEEFEIACLSNLNPEE--VEESVALVPSLQKRFAEDEIEEILGIV 146          
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Match: A0A3F2S3S1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.480e-15
Identity = 53/145 (36.55%), Postives = 86/145 (59.31%), Query Frame = 0
Query:    8 DAGNAATLNFGKEFEDVQCVTNSEVAIILDKQKKHYDALDITASPAFTATLMHVKRFSSAADDPVQ---AITLLRQALEEFEAYSADRGGLQ---KLHQFEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVIRSQQ 146
            D  +AA LN G +F +  C++N+EVA+IL+KQK  Y+  +   +  F  T  +V+RFS    DPV    ++T LR+AL    A+  +  G +   +L +FEI  L+NL   +   EE  ALIPS+ ++F ++++E+IL ++   Q
Sbjct:   10 DTEDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGT-KDPVANQASVTELREALMSL-AFQREEEGEKVEYRLEEFEIACLSNLNPEE--VEEAVALIPSLHKRFAEDEIEEILGIVSPVQ 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1096.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT81_ECTSI2.350e-3344.90RPOL4c domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835YSR6_9STRA2.500e-2844.30HRDC-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A024TL56_9STRA1.220e-1839.33RPOL4c domain-containing protein n=7 Tax=Aphanomyc... [more]
A0A6A3KCE9_9STRA4.200e-1739.42RPOL4c domain-containing protein n=4 Tax=Phytophth... [more]
H3GHD4_PHYRM9.190e-1736.43RPOL4c domain-containing protein n=23 Tax=Oomycota... [more]
F0W0U0_9STRA9.190e-1737.14Uncharacterized protein AlNc14C5G725 n=1 Tax=Albug... [more]
A0A067CZ22_SAPPC1.420e-1638.46RPOL4c domain-containing protein n=4 Tax=Saprolegn... [more]
A0A3M6VV57_9STRA2.570e-1636.88RPOL4c domain-containing protein n=3 Tax=Peronospo... [more]
A0A8K1FR52_PYTOL7.190e-1635.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2S3S1_9STRA2.480e-1536.55Helicase C-terminal domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 19..149
e-value: 3.9E-5
score: 27.5
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 9..147
e-value: 8.7E-29
score: 102.0
IPR005574RNA polymerase subunit Rpb4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 28..143
e-value: 1.0E-10
score: 42.0
IPR045222DNA-directed RNA polymerase II subunit Rpb4-likePANTHERPTHR21297DNA-DIRECTED RNA POLYMERASE IIcoord: 8..147
NoneNo IPR availablePANTHERPTHR21297:SF0DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4coord: 8..147
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 10..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1096contigP-wetherbeei_contig1096:1796..2251 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1096.2.1mRNA_P-wetherbeei_contig1096.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1096 1748..2387 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1096.2.1 ID=prot_P-wetherbeei_contig1096.2.1|Name=mRNA_P-wetherbeei_contig1096.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MLSQEREDAGNAATLNFGKEFEDVQCVTNSEVAIILDKQKKHYDALDITA
SPAFTATLMHVKRFSSAADDPVQAITLLRQALEEFEAYSADRGGLQKLHQ
FEIVQLANLITADSSAEEVTALIPSIGQKFDQEDVEKILDVIRSQQHGRL
G*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006590RNA_pol_Rpb4/RPC9_core
IPR038324Rpb4/RPC9_sf
IPR005574Rpb4/RPC9
IPR045222Rpb4-like
IPR010997HRDC-like_sf