mRNA_P-wetherbeei_contig9999.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9999.1.1
Unique NamemRNA_P-wetherbeei_contig9999.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Match: D7FT74_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT74_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 4.460e-56
Identity = 131/273 (47.99%), Postives = 160/273 (58.61%), Query Frame = 1
Query:  214 KTGGITYKETLRVVSANGEGDKIVLPTSALASLSEQDAIALGPMFFELIVPSSGSAGGGTSXXXXXXXSGGAC------THAGVLEFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAXXXXXXXXXXXXXXXXXXPAAKF---VTVKYVRLPRATFARVRPDTVGLSQVSELRGVLEHNLQQHATLTAGDIVAVWHRGRRFRAT-------------------VTELRPEPQASLIDTDVEIEVDLPEAAQQAAQESAATRRAHTLRAHYG 948
            +T GI+YKE+L  V+A+GEGDKI+LP SAL  LS QDA+ LGPM FEL   +SG+A              G        THAGVLEF A+EGT+G+P KV   L LG  AAA +                       PA +    V V+YVRL +ATFARV P+TVGLSQVSELR +LEHN++ HATLT GD ++VW RG+ F                      V ELRPEPQ ++IDTD+EIE+DLPE A++  QE  A  RA TLRAH G
Sbjct:   74 RTAGISYKESLLAVTADGEGDKILLPPSALECLSRQDAVGLGPMLFELTCTTSGAAPTSQQQPEKAPALQGGTITTTRTTHAGVLEFVADEGTIGLPRKVVLSL-LG--AAAHQVPSRTSDENISANDDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSLKSEDSHSPLTPEREPPLTMQVVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMG 343          
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Match: A0A4D9CT31_9STRA (UBX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT31_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.400e-39
Identity = 97/227 (42.73%), Postives = 133/227 (58.59%), Query Frame = 1
Query:  211 RKTGGITYKETLRVVSANGEGDKIVLPTSALASLSEQDAIALGPMFFEL-IVPSSGSAGGGTSXXXXXXXSGGACTHAGVLEFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAXXXXXXXXXXXXXXXXXXPA---AKFVTVKYVRLPRATFARVRPDTVGLSQVSELRGVLEHNLQQHATLTAGDIVAVWHRGRRFRATVTELRPEPQASLIDTDVEIEVDLPE 879
            R T GITY   L   + +GEGDKI+LP SAL +L++QDA+ALGPM F+L ++P+ G+             +G   THAGVLEF+AE+G +G+P KV + L + E     E                       PA      V VKYVRL + T+A+V+P T  L  V EL+G+LE NLQ HATL+ GD++ VW+RGR F   VT L P    ++IDTD+ ++V++PE
Sbjct:   69 RLTAGITYSCDLWPYTVSGEGDKIILPPSALETLTQQDALALGPMLFQLSLLPAEGNKS-------KQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSL-VAEPEETREDGSRGMKERVEGPGGEEGDSRASPAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVTGLEPTQAVTVIDTDLTVDVEVPE 287          
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Match: A0A1V9YKH6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YKH6_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.540e-33
Identity = 106/290 (36.55%), Postives = 152/290 (52.41%), Query Frame = 1
Query:    1 MEFDFGNRGSRLQKEQEKRKADARQRLAXXXXXXXXXRRHAEALEAQIRSRKLEQIRQEEEVRRLEEEERRKTGGITYKETLRVVSANGEGDKIVLPTSALASLSEQDAIALGPMFFELIVPSSGSAGGGTSXXXXXXXSGGACTHAGVLEFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAXXXXXXXXXXXXXXXXXXPAAKFVTVKYVRLPRATFARVRPDTVGLSQVS-ELRGVLEHNLQQHATLTAGDIVAVWHRGRRFRATVTELRPEPQASLIDTDVEIEV 867
            M+FD G+RG +L KEQE R+A AR+   XXXXXXXXX      +E + + RK EQ+ +         EE R TGGI YK+TLR V  + +GDK+ LP SAL +L+ Q+A+ +G + FEL                      G  THA VLEF A+EGT+G+PPK A+ L +  L                                 + V++VRL +  F +++P   G      + + +LE  L+ H TLT GDI+ V H G  F   V ++RPEPQ ++++ D+E++V
Sbjct:    1 MDFDVGSRGKKLAKEQETRRAAARKXXXXXXXXXXXXXXXXXEMELENQRRKAEQLERXXXXXXXXLEEERVTGGIAYKQTLRAVPIDTDGDKVTLPVSALETLNPQNALDMGVLSFELTFN-------------------GIRTHASVLEFVADEGTIGIPPKTAKSLHILHLENVQ-----------------------------IAVRFVRLSKGQFVQLQPLGEGFGDRQLDFKALLERTLKMHTTLTQGDILLVRHGGMTFDIGVRQMRPEPQVNILNVDLEVDV 242          
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Match: T0RDP2_SAPDV (UBX domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RDP2_SAPDV)

HSP 1 Score: 136 bits (342), Expect = 7.630e-33
Identity = 111/305 (36.39%), Postives = 163/305 (53.44%), Query Frame = 1
Query:    1 MEFDFGNRGSRLQKEQEKRKADARQRLAXXXXXXXXXRRHAEALEAQIRSRKLEQIRQEEEVRRLEEEERRKTGGITYKETLRVVSANGEGDKIVLPTSALASLSEQDAIALGPMFFELIVPSSGSAGGGTSXXXXXXXSGGACTHAGVLEFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAXXXXXXXXXXXXXXXXXXPAAKFVTVKYVRLPRATFARVRP--DTVGLSQVSELRGVLEHNLQQHATLTAGDIVAVWHRGRRFRATVTELRPEPQASLIDTDVEIEVDLPEAAQQAAQESA 909
            M+FD G+R  +L KEQE R+  AR++  XXXXXXXX  +    +E + + RK EQ++          E+ R TGGI YK+TLR V+ + +GDKI LP SAL +L+ Q+A+ +G + FEL   S                   A THA VLEF A+EGT+G+PPK+A+ L L                                 +  + V++VRL R  F +++P  D  G  Q+ +L+ +LE  L+ H T+T GDI+ V   G  F   V ++ PEPQ  +++ D+E++V LP  A  AA+ +A
Sbjct:    1 MDFDVGSRARKLAKEQEARREAARKKXXXXXXXXXXAEKLRVEMELESQRRKAEQLQXXXXXXXXXLEDERVTGGIAYKQTLRAVAIDNDGDKITLPVSALEALNPQNALDMGVLSFELTHLS-------------------ATTHASVLEFVADEGTIGIPPKIAKSLDL-----------------------------LTHDSVAIGVRFVRLARGRFVQLQPLGDGFGDRQL-DLKALLERTLKNHTTITQGDILLVRQGGVTFDIAVRQVLPEPQVQILNVDLEVDV-LPSEAVDAAKRAA 255          
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Match: B9IAI2_POPTR (Uncharacterized protein n=8 Tax=Saliceae TaxID=238069 RepID=B9IAI2_POPTR)

HSP 1 Score: 135 bits (340), Expect = 3.510e-32
Identity = 106/301 (35.22%), Postives = 156/301 (51.83%), Query Frame = 1
Query:    1 MEFDFGNRGSRLQKEQEKRKADARQRLAXXXXXXXXXRRHAEALEAQIRSRKLEQIRQEEEVRRLEEEERRKTGGITYKETLRVVSANGEGDKIVLPTSALASLSEQDAIALGPMFFEL-IVPSSGSAGGGTSXXXXXXXSGGACTHAGVLEFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAXXXXXXXXXXXXXXXXXXPAAKFVTVKYVRLPRATFARVRPDTVGLSQVSELRGVLEHNLQQHATLTAGDIVAVWHRGRRFRATVTELRPEPQASLIDTDVEIEVDLPEAAQQAAQ 900
            M+F+      +L+KE       A+ RL    XXXXXX    EA+EA  RSR+L+ I+ + +V    +E      GI +   L  VS  G GDKI LP S    LS+Q A   GP++F+L +V   GS+            S  + TH+GVLEF AEEG+VG+PP V   L                                 P A  + V+YV LP+ T+A+++PD VG S +   + VLE +L+QHATL+ GD++ V H    ++  V ELRP    S+++TD+E++V  P++  +++Q
Sbjct:    1 MDFELRRAREKLEKEXXXXXXXAKLRLDRERXXXXXXXXQREAIEAVHRSRRLDAIQAQLKVDEQMQENLLAGRGIVFSRILEAVSFQGSGDKIKLPPSCFTGLSDQGAFDKGPLYFQLSVVHQEGSS------EMIDTDSKQSTTHSGVLEFTAEEGSVGLPPHVWSNL----------------------------FPIDSPKAPLIEVQYVWLPKGTYAKLQPDVVGFSDLPNHKAVLETSLRQHATLSEGDVITVNHGILTYKLQVLELRPSSSVSVLETDIEVDVVGPDSGLESSQ 267          
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Match: A0A8K0MER5_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0MER5_9ROSA)

HSP 1 Score: 135 bits (340), Expect = 3.600e-32
Identity = 100/289 (34.60%), Postives = 150/289 (51.90%), Query Frame = 1
Query:    1 MEFDFGNRGSRLQKEQEKRKADARQRLAXXXXXXXXXRRHAEALEAQIRSRKLEQIRQEEEVRRLEEEERRKTGGITYKETLRVVSANGEGDKIVLPTSALASLSEQDAIALGPMFFELIVPSSGSAGGGTSXXXXXXXSGGACTHAGVLEFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAXXXXXXXXXXXXXXXXXXPAAKFVTVKYVRLPRATFARVRPDTVGLSQVSELRGVLEHNLQQHATLTAGDIVAVWHRGRRFRATVTELRPEPQASLIDTDVEIEV 867
            M+F+      +LQKEQ++RK  AR +L  XXXXXXX ++  EA+E   RSR+L+    + +  + +EE      GI +   L  V   G GDKI LP S    LS+Q A   GP++F+L +        G+S         G  TH+GVLEF A+EGTVGVPP V + L                                 P    + V+YV LP+ T+A+++PD +G S +   + +LE +L+QHATL+  DI  V +    ++  V EL+P    S+++TD+E+++
Sbjct:    1 MDFELRRAREKLQKEQKERKERARLKLERXXXXXXXAKKQREAIETVQRSRRLDAAEAQLKAEQQKEESLLAGRGIMFYRALEAVPFQGNGDKIKLPPSCFTELSDQGAFDKGPLYFQLTLTHQE----GSSNINAADKINGRTTHSGVLEFTADEGTVGVPPHVWQNL----------------------------FPTNTPNISLIEVRYVWLPKGTYAKLQPDQLGFSDLPNHKAILETSLRQHATLSEDDIFTVNYGELIYKLQVLELKPSSSVSVLETDIEVDI 257          
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Match: A0A329RIV7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RIV7_9STRA)

HSP 1 Score: 134 bits (336), Expect = 7.400e-32
Identity = 97/290 (33.45%), Postives = 143/290 (49.31%), Query Frame = 1
Query:    1 MEFDFGNRGSRLQKEQEKRKADARQRLAXXXXXXXXXRRHAEALEAQIRSRKLEQIRQEEEVRRLEEEERRKTGGITYKETLRVVSANGEGDKIVLPTSALASLSEQDAIALGPMFFELIVPSSGSAGGGTSXXXXXXXSGGACTHAGVLEFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAXXXXXXXXXXXXXXXXXXPAAKFVTVKYVRLPRATFARVRPDTVGLSQVS-ELRGVLEHNLQQHATLTAGDIVAVWHRGRRFRATVTELRPEPQASLIDTDVEIEV 867
            ME D  +R S+  +EQ KR+  A++++           +  E LE     +++E+I + E   +   EE+R TGGI Y + LR V   G+GDKI LP SAL  L  Q+A+ LG   FEL        GG ++            THAGVLEF AEEGTVG+PPKVA  L                                 P +  + V++VRL +  FA ++P   G      + + +LE +L+ H TLT GD++ V H    F   V EL+PE   ++++TD+E+++
Sbjct:    1 MELDLNSRNSKWNREQNKRREQAKRKIETERRKRAAVAKAREELEKLQMQKRVERIAELERQEQQALEEQRLTGGIKYLQQLRPVPTKGDGDKITLPVSALEELDPQNALELGVFTFELSFDEDHHDGGASTLKRQ--------THAGVLEFVAEEGTVGLPPKVATSL--------------------------FRYTKQLPGS--IKVRFVRLEKGRFATLQPRGEGFGDRQIDFKHMLERSLKTHTTLTEGDVLFVRHGRETFEVLVAELKPERAINILNTDLEVDM 254          
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Match: A0A1V9YQB9_9STRA (UBX domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQB9_9STRA)

HSP 1 Score: 133 bits (335), Expect = 7.400e-32
Identity = 109/293 (37.20%), Postives = 159/293 (54.27%), Query Frame = 1
Query:    1 MEFDFGNRGSRLQKEQEKRKADARQRLAXXXXXXXXXRRHAEALEAQIRSRKLEQIRQ--EEEVRRLEEEERRKTGGITYKETLRVVSANGEGDKIVLPTSALASLSEQDAIALGPMFFELIVPSSGSAGGGTSXXXXXXXSGGACTHAGVLEFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAXXXXXXXXXXXXXXXXXXPAAKFVTVKYVRLPRATFARVRP--DTVGLSQVSELRGVLEHNLQQHATLTAGDIVAVWHRGRRFRATVTELRPEPQASLIDTDVEIEV 867
            M+FD G+RG +L KEQE R+  AR+   XXXXXXXXX         + + RK E + +  +EE+ RLEEE  R TGGI+Y++TLR V  + +GDKI LP SAL +L+ Q+A+ +G + FEL  P + +                  THA VLEF A+EG++G+PPK+A  L L  L                              +  + V++VRL +  F +++P  D  G  Q+ + + +LE  L+ H TLT GDI+ V   G  F   V  +RPEPQ  +++ D+E++V
Sbjct:    1 MDFDVGSRGKKLAKEQEARREAARKXXXXXXXXXXXXXXXXXXXXXESQRRKAELLERAAQEELDRLEEE--RVTGGISYRKTLRAVPIDNDGDKITLPVSALEALNPQNALDMGVLSFELTCPLATTK-----------------THASVLEFVADEGSIGIPPKIAMSLRLMPL-----------------------------DSVDIDVRFVRLAKGQFVQLQPLADGFGDRQL-DFKALLERTLKTHTTLTEGDILLVRQGGVTFDVAVRAIRPEPQVKILNVDLEVDV 244          
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Match: A0A6G0XAU2_9STRA (UBX domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAU2_9STRA)

HSP 1 Score: 133 bits (334), Expect = 9.860e-32
Identity = 109/291 (37.46%), Postives = 150/291 (51.55%), Query Frame = 1
Query:    1 MEFDFGNRGSRLQKEQEKRKADARQRLAXXXXXXXXXRRHAEALEAQIRSRKLEQIRQEEEVRRLEEEERRKTGGITYKETLRVVSANGEGDKIVLPTSALASLSEQDAIALGPMFFELIVPSSGSAGGGTSXXXXXXXSGGACTHAGVLEFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAXXXXXXXXXXXXXXXXXXPAAKFVTVKYVRLPRATFARVRP--DTVGLSQVSELRGVLEHNLQQHATLTAGDIVAVWHRGRRFRATVTELRPEPQASLIDTDVEIEV 867
            M+FD G+RG + QKEQE R+  ARQ++ XXXXXXXXX R    +EA+ + RK               EE+R TGGI+YK+TLR V    +GDK+ LP SAL  L+ Q+A+ LG   FELI                   +G   THA VLEF A+EGT+G+PPKVA  L L                                A   V+V++VRL +    +++P  D  G  QV + + +LE  L  H TLT GDI+ V H    F   V  + P PQ ++++ D+E+++
Sbjct:    1 MDFDLGSRGKKFQKEQEARRQAARQKMEXXXXXXXXXNRLRLEMEAETQRRKEXXXXXXXXXXXXXLEEQRVTGGISYKKTLRAVPILNDGDKVTLPVSALEELNPQNALDLGVFTFELI-------------------AGERKTHASVLEFTADEGTIGIPPKVARSLQL------------------------------IDAVVDVSVRFVRLEKGRSVKLQPLGDGFGDRQV-DFKHILERTLHTHTTLTEGDILLVRHGKITFEVLVHNIEPSPQVTILNVDLEVDL 241          
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Match: A0A484E4L3_BRELC (UBA domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4L3_BRELC)

HSP 1 Score: 132 bits (333), Expect = 1.740e-31
Identity = 98/290 (33.79%), Postives = 141/290 (48.62%), Query Frame = 1
Query:    1 MEFDFGNRGSRLQKEQEKRKADARQRLAXXXXXXXXXRRHAEALEAQIRSRKLEQIRQEEEVRRLEEEERRKTGGITYKETLRVVSANGEGDKIVLPTSALASLSEQDAIALGPMFFELIVPSSGSAGGGTSXXXXXXXSGGACTHAGVLEFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAXXXXXXXXXXXXXXXXXXPAAKFVTVKYVRLPRATFARVRPDTVGLSQVS-ELRGVLEHNLQQHATLTAGDIVAVWHRGRRFRATVTELRPEPQASLIDTDVEIEV 867
            ME D  +R ++  +EQ KR+  A+++LA          +     E   + +++E+I + E   + E E +R TGGI Y E L       +GDKI LP SAL  L+ Q+A  LG + FEL +P   + G  T             THAGVLEF A EGTVG+PPKV   L                                      V V+YVRL +  FAR++P   G      +L+ +LE +LQ H TLT GD+V V H    F   VT+L+PE   ++++TD+E+++
Sbjct:    1 MELDLNSRNAKWNREQLKRRDQAKRKLATEQRKRLAATKARXXXELLQKQKRIERIVELERQEQQELEAQRLTGGIQYLEQLEPFPTTTDGDKITLPVSALEMLNPQNAFELGVLTFELSLPKDDATGVETKSPQRF-------THAGVLEFTAREGTVGLPPKVTASL---------------------------FQSRPNLLHCLVQVRYVRLEKGKFARLQPQGEGFKDRQLDLKPLLEQSLQTHTTLTEGDVVFVRHGRETFNVIVTKLKPEKAVTILNTDLEVDL 256          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9999.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT74_ECTSI4.460e-5647.99UBX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CT31_9STRA1.400e-3942.73UBX domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A1V9YKH6_9STRA1.540e-3336.55Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0RDP2_SAPDV7.630e-3336.39UBX domain-containing protein n=2 Tax=Saprolegnia ... [more]
B9IAI2_POPTR3.510e-3235.22Uncharacterized protein n=8 Tax=Saliceae TaxID=238... [more]
A0A8K0MER5_9ROSA3.600e-3234.60Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A329RIV7_9STRA7.400e-3233.45Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A1V9YQB9_9STRA7.400e-3237.20UBX domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A6G0XAU2_9STRA9.860e-3237.46UBX domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A484E4L3_BRELC1.740e-3133.79UBA domain-containing protein n=1 Tax=Bremia lactu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9999contigP-wetherbeei_contig9999:901..2359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FT74
Preferred nameubxn8
PFAMsUBX,UFD1
Model size948
Max annot lvl2759|Eukaryota
KEGG koko:K14016,ko:K18726
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.31e-57
EggNOG OGsCOG5140@1|root,KOG1363@1|root,KOG1363@2759|Eukaryota,KOG1816@2759|Eukaryota
DescriptionER-associated misfolded protein catabolic process
Cds size948
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187120.1587863-CDS-P-wetherbeei_contig9999:900..10831683187120.1587863-CDS-P-wetherbeei_contig9999:900..1083Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9999 901..1083 +
1683187120.1730063-CDS-P-wetherbeei_contig9999:1283..13711683187120.1730063-CDS-P-wetherbeei_contig9999:1283..1371Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9999 1284..1371 +
1683187120.182881-CDS-P-wetherbeei_contig9999:1682..23591683187120.182881-CDS-P-wetherbeei_contig9999:1682..2359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9999 1683..2359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9999.1.1prot_P-wetherbeei_contig9999.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9999 901..2359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9999.1.1

>prot_P-wetherbeei_contig9999.1.1 ID=prot_P-wetherbeei_contig9999.1.1|Name=mRNA_P-wetherbeei_contig9999.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=316bp
MEFDFGNRGSRLQKEQEKRKADARQRLAKEKAAKEEARRHAEALEAQIRS
RKLEQIRQEEEVRRLEEEERRKTGGITYKETLRVVSANGEGDKIVLPTSA
LASLSEQDAIALGPMFFELIVPSSGSAGGGTSSDGASSASGGACTHAGVL
EFAAEEGTVGVPPKVAECLGLGELAAAAETAGTAAGEAATVAAVGAAGAA
AGPAAKFVTVKYVRLPRATFARVRPDTVGLSQVSELRGVLEHNLQQHATL
TAGDIVAVWHRGRRFRATVTELRPEPQASLIDTDVEIEVDLPEAAQQAAQ
ESAATRRAHTLRAHYG
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mRNA from alignment at P-wetherbeei_contig9999:901..2359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9999.1.1 ID=mRNA_P-wetherbeei_contig9999.1.1|Name=mRNA_P-wetherbeei_contig9999.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1459bp|location=Sequence derived from alignment at P-wetherbeei_contig9999:901..2359+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTTTGACTTTGGTAATCGCGGCAGCCGGCTGCAGAAGGAGCAGGA GAAGCGGAAGGCAGACGCTCGACAGAGGCTTGCCAAAGAGAAGGCCGCCA AAGAGGAGGCACGGCGACACGCAGAGGCATTAGAGGCGCAAATACGCTCC AGAAAGCTAGAGCAGATACGCCAAGAAGAGGAGGTGAAAGAATTGGCTGC CGAATCCGATCGCAGGCTGCCGGATAGGTTCAGGGATCGTTGATGGTATT TAAAACGTTGAGACGGACGTTATTACATTGCGGCTCCGCGAGAGCAACCG TCATTGTTGCCCAGTATGTAACTTCGCCCCTCTTCTCACGAAAACTTACC CCGTTGCTTTCCTCCAACCAATCCGCTGAGCAGGTAAGACGGCTCGAGGA GGAAGAGAGGCGAAAGACGGGCGGCATTACTTACAAAGAGACCCTGCGTG TCGTCTCCGCCAACGGAGAAGGTAAGAGAGCCGGCCGCTTCCTTGGCTTT ATGGGGTTGCTTGCTTGTCCTACTTCTGCTGCAATCGTCCGTCTTTTTCA ACGAACGGAACTTTTCTGCGCACTATTGGGGAAAAAATACCGCAACTTTC AACTTAAAAGTCAATTATTTCGCAGCATCACTTGATTAAATACAGAGCGG TTCGACACCTTGTGGGCGCCTACAACGGATTGAGCTTGTGAAGATCAAAC ATGTTTATTTATTAGGATGTTTATATATGTAGGGTGCTGTTTAGCTGAGA GCTCTTTATCTTCTCCCTTTGCAAAACATCAGGTGACAAGATTGTGTTGC CGACGTCAGCACTCGCCTCACTATCCGAGCAAGACGCCATAGCTTTGGGC CCAATGTTCTTTGAGCTCATCGTCCCTAGCTCCGGCAGCGCCGGTGGCGG CACCAGCAGTGACGGCGCCAGCAGCGCCAGCGGCGGCGCGTGCACCCATG CCGGCGTGCTAGAATTTGCAGCGGAGGAAGGCACCGTCGGCGTGCCCCCA AAGGTCGCCGAATGCCTCGGCCTGGGAGAATTGGCGGCGGCTGCCGAGAC TGCCGGCACCGCCGCAGGCGAGGCCGCGACCGTCGCGGCGGTTGGAGCGG CGGGAGCGGCAGCCGGACCAGCGGCAAAGTTTGTGACAGTGAAATACGTA AGGTTGCCGCGGGCGACCTTCGCGCGGGTGCGTCCAGACACGGTGGGACT GTCGCAGGTCAGCGAGTTGCGGGGCGTCCTCGAGCACAACCTGCAGCAGC ACGCCACGCTGACGGCGGGCGACATCGTTGCAGTGTGGCACCGCGGCCGC CGCTTCCGGGCGACCGTCACGGAGCTGCGGCCGGAGCCACAGGCATCGCT TATCGACACGGACGTCGAGATCGAGGTGGATCTGCCGGAGGCGGCGCAGC AGGCGGCGCAGGAGTCCGCCGCGACGCGGCGCGCGCACACGCTGCGGGCG CACTACGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9999:901..2359+

>mRNA_P-wetherbeei_contig9999.1.1 ID=mRNA_P-wetherbeei_contig9999.1.1|Name=mRNA_P-wetherbeei_contig9999.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=948bp|location=Sequence derived from alignment at P-wetherbeei_contig9999:901..2359+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTTTGACTTTGGTAATCGCGGCAGCCGGCTGCAGAAGGAGCAGGA
GAAGCGGAAGGCAGACGCTCGACAGAGGCTTGCCAAAGAGAAGGCCGCCA
AAGAGGAGGCACGGCGACACGCAGAGGCATTAGAGGCGCAAATACGCTCC
AGAAAGCTAGAGCAGATACGCCAAGAAGAGGAGGTAAGACGGCTCGAGGA
GGAAGAGAGGCGAAAGACGGGCGGCATTACTTACAAAGAGACCCTGCGTG
TCGTCTCCGCCAACGGAGAAGGTGACAAGATTGTGTTGCCGACGTCAGCA
CTCGCCTCACTATCCGAGCAAGACGCCATAGCTTTGGGCCCAATGTTCTT
TGAGCTCATCGTCCCTAGCTCCGGCAGCGCCGGTGGCGGCACCAGCAGTG
ACGGCGCCAGCAGCGCCAGCGGCGGCGCGTGCACCCATGCCGGCGTGCTA
GAATTTGCAGCGGAGGAAGGCACCGTCGGCGTGCCCCCAAAGGTCGCCGA
ATGCCTCGGCCTGGGAGAATTGGCGGCGGCTGCCGAGACTGCCGGCACCG
CCGCAGGCGAGGCCGCGACCGTCGCGGCGGTTGGAGCGGCGGGAGCGGCA
GCCGGACCAGCGGCAAAGTTTGTGACAGTGAAATACGTAAGGTTGCCGCG
GGCGACCTTCGCGCGGGTGCGTCCAGACACGGTGGGACTGTCGCAGGTCA
GCGAGTTGCGGGGCGTCCTCGAGCACAACCTGCAGCAGCACGCCACGCTG
ACGGCGGGCGACATCGTTGCAGTGTGGCACCGCGGCCGCCGCTTCCGGGC
GACCGTCACGGAGCTGCGGCCGGAGCCACAGGCATCGCTTATCGACACGG
ACGTCGAGATCGAGGTGGATCTGCCGGAGGCGGCGCAGCAGGCGGCGCAG
GAGTCCGCCGCGACGCGGCGCGCGCACACGCTGCGGGCGCACTACGGA
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