mRNA_P-wetherbeei_contig985.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig985.2.1
Unique NamemRNA_P-wetherbeei_contig985.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig985.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig985contigP-wetherbeei_contig985:3762..6054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2295
Hectar predicted targeting categoryother localisation
Exons1
Cds size2271
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.1749887-UTR-P-wetherbeei_contig985:3761..37831683187113.1749887-UTR-P-wetherbeei_contig985:3761..3783Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig985 3762..3783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.1866229-CDS-P-wetherbeei_contig985:3783..60541683187113.1866229-CDS-P-wetherbeei_contig985:3783..6054Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig985 3784..6054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig985.2.1prot_P-wetherbeei_contig985.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig985 3784..6054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig985.2.1

>prot_P-wetherbeei_contig985.2.1 ID=prot_P-wetherbeei_contig985.2.1|Name=mRNA_P-wetherbeei_contig985.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=757bp
MVPSTDVAAGSKPSLSRAPAATAITAVTAVTVGSAAHAGSAAKREPQLDY
DGTAAISTGAPAGASAVPPASEAGAQSSLMGSGAPFTGAKDPWGGAGAGA
EGSAGTADGQLEGVGLTRSGRGWEAAVMATATATAAAGANAPAVRRLPSS
VPAVPAAPAAPLGSSLWGGRSGLSAEPPALSQPPTSVSLWSEGSAAAAAA
AAAAATAAAAAAAVACDRDERMSSSSFDSTDVRLDDQDSRDITCLAIGAG
RLSGLPANWHVGSSSSDGGGGAGGGAAAGSDTSGWHWVGGRQKHRRVGGA
AAMSVYGGRGDGGGGDGGDGDGSSNNSEKGSDRDGGAPCNSPEAGAAGIK
GGGGGGQAFAVAPLSCAPAAARSVGLWGSQGGFSSTFFAGPGLFSWAPPE
LPAKRHWNGGADSPDDTLTKAPVPLSQRQQLALAAQTIPEFGPLPATSVT
LPPSPSFAAAPKAAAMTGVAGEVEAAPGVAAAASAAGGSSGTEAGRGRIG
CCSCCCHATAALPTAAAAVVASSGDSAATVPTAAKTAAGVAAAAVAATSA
LEAAVTGAVEAVTAGMTAAVAIAPAKGEDSVSSPLFAVELAAPEGEGEGA
TAAEAGPGRGGDSGGDCDGRNVSAIRDGVQPGDGVECLRFGGFPPVEIVR
DTAQTTSVPAMRAAFGALVAAAAAGQPAPADATAAAAPTSATSATAAPAE
PSSSAVAAPSVSKAPESRIAGSLPLGKPPPRPATPVPGPSLAPHGAGCAL
ISPGRAR
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mRNA from alignment at P-wetherbeei_contig985:3762..6054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig985.2.1 ID=mRNA_P-wetherbeei_contig985.2.1|Name=mRNA_P-wetherbeei_contig985.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2293bp|location=Sequence derived from alignment at P-wetherbeei_contig985:3762..6054+ (Phaeothamnion wetherbeei SAG_119_79)
AGCAGACGCCGCCATTCGCCGCATGGTTCCTTCAACCGACGTAGCGGCGG
GCAGCAAGCCATCATTATCGCGGGCGCCAGCGGCAACCGCCATTACCGCT
GTCACCGCCGTCACGGTCGGCAGCGCAGCGCATGCGGGCAGCGCAGCGAA
GCGGGAGCCGCAGTTGGACTACGATGGGACAGCGGCAATATCCACAGGGG
CACCGGCGGGAGCGTCCGCGGTTCCGCCCGCATCTGAAGCTGGCGCGCAA
AGCAGCCTTATGGGATCGGGGGCGCCGTTTACTGGTGCGAAAGATCCGTG
GGGTGGCGCCGGTGCCGGCGCCGAGGGCTCCGCCGGGACTGCTGACGGAC
AACTGGAAGGAGTGGGGCTGACGCGTTCTGGTCGTGGTTGGGAGGCGGCG
GTGATGGCGACGGCGACGGCGACGGCAGCGGCAGGGGCGAACGCTCCTGC
CGTTCGACGATTGCCGTCTTCGGTTCCGGCGGTCCCGGCAGCACCAGCCG
CCCCCCTCGGGTCGTCGCTTTGGGGTGGCCGAAGCGGCCTCTCTGCCGAG
CCGCCGGCGCTGTCACAGCCGCCAACATCCGTCTCGTTGTGGTCGGAGGG
CTCAGCCGCCGCTGCCGCTGCTGCCGCCGCTGCGGCCACCGCAGCGGCGG
CGGCGGCTGCCGTGGCGTGCGACCGGGACGAGCGTATGTCCTCCAGCAGC
TTTGACAGCACGGACGTGCGCTTGGACGACCAGGATTCTCGGGACATTAC
CTGTCTGGCGATCGGGGCCGGCCGTCTTTCGGGGCTTCCCGCGAATTGGC
ACGTGGGCAGTAGCAGCAGCGATGGAGGCGGTGGTGCAGGCGGCGGCGCC
GCCGCTGGAAGCGACACGTCGGGGTGGCATTGGGTGGGTGGGCGGCAGAA
GCACCGGCGCGTGGGCGGCGCAGCCGCGATGTCCGTCTACGGCGGACGCG
GCGATGGCGGCGGCGGCGATGGCGGCGATGGCGACGGGAGCAGCAATAAC
AGCGAGAAGGGCTCGGATCGGGACGGTGGCGCGCCTTGCAACAGCCCCGA
AGCTGGTGCCGCTGGTATTAAAGGCGGCGGTGGCGGCGGGCAGGCGTTTG
CCGTCGCGCCGTTGTCATGTGCACCCGCCGCCGCTAGATCGGTCGGCCTC
TGGGGCTCTCAGGGCGGCTTCTCCAGCACCTTTTTCGCAGGGCCGGGCCT
CTTTTCGTGGGCACCGCCCGAGCTGCCGGCGAAGCGCCACTGGAACGGGG
GCGCGGACAGCCCCGACGACACTCTAACGAAGGCACCGGTTCCGCTCTCG
CAGAGACAGCAACTGGCCTTGGCGGCGCAGACCATCCCGGAATTCGGACC
GTTGCCGGCGACGAGCGTCACGTTGCCGCCATCACCATCCTTTGCGGCGG
CTCCAAAGGCCGCGGCGATGACGGGTGTGGCAGGCGAGGTGGAGGCAGCT
CCTGGAGTCGCCGCCGCCGCCTCCGCGGCCGGCGGTTCCTCGGGAACCGA
GGCTGGACGCGGCAGGATTGGTTGCTGCTCTTGCTGCTGCCATGCCACCG
CAGCGCTCCCCACGGCCGCAGCTGCCGTCGTCGCCTCCTCAGGCGATAGT
GCAGCGACGGTACCGACGGCGGCGAAGACGGCTGCGGGGGTAGCGGCGGC
AGCGGTGGCGGCAACCTCCGCATTGGAAGCGGCTGTAACAGGGGCGGTGG
AGGCGGTTACGGCGGGGATGACGGCAGCGGTGGCAATCGCGCCAGCAAAG
GGAGAGGACTCAGTATCCTCGCCGCTTTTTGCGGTGGAGCTGGCTGCCCC
GGAAGGCGAAGGCGAGGGCGCCACGGCTGCTGAAGCTGGTCCCGGCCGCG
GAGGCGACAGCGGAGGCGATTGCGATGGCCGAAATGTTTCTGCCATCAGG
GATGGCGTGCAGCCGGGAGATGGTGTCGAATGCCTGCGCTTTGGCGGATT
CCCGCCGGTTGAAATAGTCCGCGACACCGCTCAGACGACGTCTGTGCCCG
CCATGAGGGCAGCATTTGGAGCATTGGTGGCGGCGGCTGCGGCGGGGCAG
CCTGCCCCAGCGGATGCGACAGCGGCGGCGGCGCCAACATCAGCGACATC
GGCAACGGCAGCGCCGGCGGAACCGTCATCTTCGGCTGTGGCTGCACCGT
CGGTGAGCAAAGCGCCGGAATCGCGAATCGCAGGCTCGCTGCCGCTCGGC
AAGCCGCCTCCGCGGCCGGCCACCCCGGTTCCCGGCCCGTCGCTGGCGCC
GCACGGCGCCGGCTGCGCTCTCATCAGTCCTGGGCGGGCTCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig985:3762..6054+

>mRNA_P-wetherbeei_contig985.2.1 ID=mRNA_P-wetherbeei_contig985.2.1|Name=mRNA_P-wetherbeei_contig985.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2271bp|location=Sequence derived from alignment at P-wetherbeei_contig985:3762..6054+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTCCTTCAACCGACGTAGCGGCGGGCAGCAAGCCATCATTATCGCG
GGCGCCAGCGGCAACCGCCATTACCGCTGTCACCGCCGTCACGGTCGGCA
GCGCAGCGCATGCGGGCAGCGCAGCGAAGCGGGAGCCGCAGTTGGACTAC
GATGGGACAGCGGCAATATCCACAGGGGCACCGGCGGGAGCGTCCGCGGT
TCCGCCCGCATCTGAAGCTGGCGCGCAAAGCAGCCTTATGGGATCGGGGG
CGCCGTTTACTGGTGCGAAAGATCCGTGGGGTGGCGCCGGTGCCGGCGCC
GAGGGCTCCGCCGGGACTGCTGACGGACAACTGGAAGGAGTGGGGCTGAC
GCGTTCTGGTCGTGGTTGGGAGGCGGCGGTGATGGCGACGGCGACGGCGA
CGGCAGCGGCAGGGGCGAACGCTCCTGCCGTTCGACGATTGCCGTCTTCG
GTTCCGGCGGTCCCGGCAGCACCAGCCGCCCCCCTCGGGTCGTCGCTTTG
GGGTGGCCGAAGCGGCCTCTCTGCCGAGCCGCCGGCGCTGTCACAGCCGC
CAACATCCGTCTCGTTGTGGTCGGAGGGCTCAGCCGCCGCTGCCGCTGCT
GCCGCCGCTGCGGCCACCGCAGCGGCGGCGGCGGCTGCCGTGGCGTGCGA
CCGGGACGAGCGTATGTCCTCCAGCAGCTTTGACAGCACGGACGTGCGCT
TGGACGACCAGGATTCTCGGGACATTACCTGTCTGGCGATCGGGGCCGGC
CGTCTTTCGGGGCTTCCCGCGAATTGGCACGTGGGCAGTAGCAGCAGCGA
TGGAGGCGGTGGTGCAGGCGGCGGCGCCGCCGCTGGAAGCGACACGTCGG
GGTGGCATTGGGTGGGTGGGCGGCAGAAGCACCGGCGCGTGGGCGGCGCA
GCCGCGATGTCCGTCTACGGCGGACGCGGCGATGGCGGCGGCGGCGATGG
CGGCGATGGCGACGGGAGCAGCAATAACAGCGAGAAGGGCTCGGATCGGG
ACGGTGGCGCGCCTTGCAACAGCCCCGAAGCTGGTGCCGCTGGTATTAAA
GGCGGCGGTGGCGGCGGGCAGGCGTTTGCCGTCGCGCCGTTGTCATGTGC
ACCCGCCGCCGCTAGATCGGTCGGCCTCTGGGGCTCTCAGGGCGGCTTCT
CCAGCACCTTTTTCGCAGGGCCGGGCCTCTTTTCGTGGGCACCGCCCGAG
CTGCCGGCGAAGCGCCACTGGAACGGGGGCGCGGACAGCCCCGACGACAC
TCTAACGAAGGCACCGGTTCCGCTCTCGCAGAGACAGCAACTGGCCTTGG
CGGCGCAGACCATCCCGGAATTCGGACCGTTGCCGGCGACGAGCGTCACG
TTGCCGCCATCACCATCCTTTGCGGCGGCTCCAAAGGCCGCGGCGATGAC
GGGTGTGGCAGGCGAGGTGGAGGCAGCTCCTGGAGTCGCCGCCGCCGCCT
CCGCGGCCGGCGGTTCCTCGGGAACCGAGGCTGGACGCGGCAGGATTGGT
TGCTGCTCTTGCTGCTGCCATGCCACCGCAGCGCTCCCCACGGCCGCAGC
TGCCGTCGTCGCCTCCTCAGGCGATAGTGCAGCGACGGTACCGACGGCGG
CGAAGACGGCTGCGGGGGTAGCGGCGGCAGCGGTGGCGGCAACCTCCGCA
TTGGAAGCGGCTGTAACAGGGGCGGTGGAGGCGGTTACGGCGGGGATGAC
GGCAGCGGTGGCAATCGCGCCAGCAAAGGGAGAGGACTCAGTATCCTCGC
CGCTTTTTGCGGTGGAGCTGGCTGCCCCGGAAGGCGAAGGCGAGGGCGCC
ACGGCTGCTGAAGCTGGTCCCGGCCGCGGAGGCGACAGCGGAGGCGATTG
CGATGGCCGAAATGTTTCTGCCATCAGGGATGGCGTGCAGCCGGGAGATG
GTGTCGAATGCCTGCGCTTTGGCGGATTCCCGCCGGTTGAAATAGTCCGC
GACACCGCTCAGACGACGTCTGTGCCCGCCATGAGGGCAGCATTTGGAGC
ATTGGTGGCGGCGGCTGCGGCGGGGCAGCCTGCCCCAGCGGATGCGACAG
CGGCGGCGGCGCCAACATCAGCGACATCGGCAACGGCAGCGCCGGCGGAA
CCGTCATCTTCGGCTGTGGCTGCACCGTCGGTGAGCAAAGCGCCGGAATC
GCGAATCGCAGGCTCGCTGCCGCTCGGCAAGCCGCCTCCGCGGCCGGCCA
CCCCGGTTCCCGGCCCGTCGCTGGCGCCGCACGGCGCCGGCTGCGCTCTC
ATCAGTCCTGGGCGGGCTCGG
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