mRNA_P-wetherbeei_contig9778.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9778.2.1
Unique NamemRNA_P-wetherbeei_contig9778.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9778.2.1 vs. uniprot
Match: A0A6H5KTV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.000e-17
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:    7 GPFMQQGQPAPPPRVLARTTALRLADGTFVPHRVQLMKQTQRYAKRTNVPITNRVSFQFRDPRTGIPRSVEREFCTHQWYAGLYKKLLRDTLRRQPQLMALV 312
            GP      P P PR++ RTTALRL  G FV HR   MK+TQ YAKR N+P+ N V+F   +P T    +V REFC   +YA +YK+LL+DTLR+   L  +V
Sbjct:  488 GPHGWTYPPPPVPRIIGRTTALRLRSGEFVQHRSGFMKRTQSYAKRNNIPVDNLVTFSIINPHTQRRYNVTREFCAAPYYAAIYKRLLKDTLRKNLSLAPVV 589
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BLAST of mRNA_P-wetherbeei_contig9778.2.1 vs. uniprot
Match: D8LCY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.330e-17
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:   31 PAPPPRVLARTTALRLADGTFVPHRVQLMKQTQRYAKRTNVPITNRVSFQFRDPRTGIPRSVEREFCTHQWYAGLYKKLLRDTLRRQPQLMALV 312
            P P PR++ RTTALRL  G FV HR   MK+TQ YAKR N+P+ N V+F   +P T    +V REFC   +YA +YK+LL+DTLR+   L  +V
Sbjct:  445 PPPVPRIIGRTTALRLRSGEFVQHRSGFMKRTQSYAKRNNIPVDNLVTFSIINPHTQRRYNVTREFCAAPYYAAIYKRLLKDTLRKNLSLAPVV 538
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9778.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTV3_9PHAE1.000e-1749.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCY6_ECTSI1.330e-1751.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9778contigP-wetherbeei_contig9778:382..2016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCY6
PFAMsHelicase_C,SNF2_N
Model size1636
Max annot lvl2759|Eukaryota
KEGG koko:K08737,ko:K11267,ko:K11654
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.78e-18
EggNOG OGsCOG0553@1|root,KOG1525@1|root,KOG0385@2759|Eukaryota,KOG1525@2759|Eukaryota
Descriptionmitotic sister chromatid cohesion
Cds size1620
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187109.687983-CDS-P-wetherbeei_contig9778:381..20011683187109.687983-CDS-P-wetherbeei_contig9778:381..2001Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9778 382..2001 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187109.7118936-UTR-P-wetherbeei_contig9778:2001..20161683187109.7118936-UTR-P-wetherbeei_contig9778:2001..2016Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9778 2002..2016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9778.2.1prot_P-wetherbeei_contig9778.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9778 382..2001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9778.2.1

>prot_P-wetherbeei_contig9778.2.1 ID=prot_P-wetherbeei_contig9778.2.1|Name=mRNA_P-wetherbeei_contig9778.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=540bp
MQQGQPAPPPRVLARTTALRLADGTFVPHRVQLMKQTQRYAKRTNVPITN
RVSFQFRDPRTGIPRSVEREFCTHQWYAGLYKKLLRDTLRRQPQLMALVQ
PPPPPPPVSLPPTTMMAGMPSIPPDMLGGHTAASFAAVAATGNPAAAAAL
AHLLAATNRGGSGGGPSSQSSQSGPNGAGGGAGDASNDPGRGFGAMGGPV
GAAGQPQVRPPMGPGGVDILSISPTKGGGGSHAWWAENNGTAAGGGVHGH
GGGSSGGCNSAAAVAAAAAALSPRSRAAAHEWAAAWNERARHPPPPEVAA
AGTAAVVAYYEKLLAAAATAQFPVDAVLLSTVEARLQHAQRQHAADAAHA
AHAYATGSVGGSAAPLQPSMAEKLEAAAAAAAAGVDGSNSGGDVKGDDGV
KMEEAAQAAGAEAAAAAAETGEGAAKAGATGAGAGGESIVVKGEGEAKSA
TNDATDGAVKAEAADEDGTAKVKAEGQDSKETAAAAVAAADSDEVSTSDG
CNAATTHGSSGATDSTGADGTAATDATSAADGATAAADGA
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mRNA from alignment at P-wetherbeei_contig9778:382..2016-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9778.2.1 ID=mRNA_P-wetherbeei_contig9778.2.1|Name=mRNA_P-wetherbeei_contig9778.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1635bp|location=Sequence derived from alignment at P-wetherbeei_contig9778:382..2016- (Phaeothamnion wetherbeei SAG_119_79)
CCGGGCGGTCCCTTCATGCAGCAGGGGCAGCCGGCGCCGCCGCCGCGCGT
GCTTGCGCGAACGACGGCGCTGCGGCTGGCGGACGGCACCTTCGTGCCGC
ACCGCGTGCAGCTGATGAAGCAGACGCAGCGTTACGCGAAGCGCACCAAT
GTACCTATCACGAACCGCGTCAGCTTTCAGTTCCGCGACCCGCGGACAGG
CATCCCCCGCAGCGTCGAGCGCGAGTTCTGCACGCACCAGTGGTACGCCG
GGCTCTACAAAAAGCTGCTGCGGGACACACTCCGGCGGCAGCCGCAGCTC
ATGGCGCTGGTGCAGCCGCCGCCGCCGCCGCCGCCGGTCAGCTTACCGCC
GACGACCATGATGGCCGGAATGCCGTCGATCCCGCCGGACATGCTGGGGG
GCCACACGGCGGCGTCGTTTGCGGCGGTGGCGGCGACGGGGAACCCCGCG
GCGGCTGCAGCGCTCGCCCACCTGCTGGCGGCGACGAACCGGGGCGGCAG
TGGCGGCGGTCCCAGCAGTCAAAGCAGTCAGAGCGGTCCGAACGGCGCCG
GCGGCGGTGCGGGTGATGCCAGTAACGATCCCGGAAGAGGCTTCGGCGCC
ATGGGCGGGCCGGTGGGTGCTGCGGGCCAGCCGCAGGTACGGCCCCCGAT
GGGCCCTGGTGGCGTCGATATTCTCTCAATCTCGCCCACCAAAGGCGGCG
GCGGCAGCCACGCCTGGTGGGCGGAGAACAACGGCACCGCCGCCGGTGGT
GGAGTGCACGGCCACGGCGGGGGCAGCAGCGGGGGGTGTAACTCCGCGGC
AGCTGTGGCAGCAGCAGCGGCTGCGCTGAGCCCGCGGAGCCGGGCGGCTG
CACACGAGTGGGCGGCGGCGTGGAACGAGCGGGCGCGGCACCCGCCACCG
CCGGAGGTTGCGGCGGCCGGAACGGCGGCGGTGGTGGCATACTACGAGAA
GCTTCTGGCGGCGGCGGCGACTGCGCAATTCCCGGTCGACGCCGTGCTGC
TCAGCACCGTCGAGGCGCGCCTGCAACACGCGCAGCGGCAGCATGCTGCC
GATGCCGCTCACGCTGCGCACGCGTACGCCACCGGTTCGGTGGGCGGCTC
GGCGGCGCCGCTGCAGCCTTCGATGGCAGAGAAGCTGGAGGCGGCGGCAG
CGGCAGCAGCGGCGGGCGTAGACGGCAGCAACTCTGGCGGCGACGTCAAG
GGTGATGATGGGGTCAAGATGGAGGAAGCTGCGCAAGCTGCGGGAGCGGA
GGCGGCGGCGGCGGCGGCGGAAACCGGCGAGGGGGCGGCGAAGGCAGGGG
CGACGGGAGCTGGTGCTGGCGGGGAAAGCATTGTTGTCAAGGGCGAGGGA
GAGGCTAAATCGGCTACCAACGACGCGACGGACGGTGCGGTCAAGGCGGA
GGCAGCGGATGAGGATGGCACCGCCAAAGTTAAGGCGGAAGGGCAAGACA
GCAAGGAAACTGCCGCCGCTGCTGTCGCTGCCGCCGATAGCGACGAGGTT
TCTACATCCGACGGCTGCAACGCCGCCACGACTCACGGCAGCTCCGGCGC
CACCGACAGCACAGGGGCTGATGGCACCGCTGCGACCGATGCTACCAGTG
CTGCTGACGGCGCCACCGCCGCGGCCGACGGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9778:382..2016-

>mRNA_P-wetherbeei_contig9778.2.1 ID=mRNA_P-wetherbeei_contig9778.2.1|Name=mRNA_P-wetherbeei_contig9778.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1620bp|location=Sequence derived from alignment at P-wetherbeei_contig9778:382..2016- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCAGGGGCAGCCGGCGCCGCCGCCGCGCGTGCTTGCGCGAACGAC
GGCGCTGCGGCTGGCGGACGGCACCTTCGTGCCGCACCGCGTGCAGCTGA
TGAAGCAGACGCAGCGTTACGCGAAGCGCACCAATGTACCTATCACGAAC
CGCGTCAGCTTTCAGTTCCGCGACCCGCGGACAGGCATCCCCCGCAGCGT
CGAGCGCGAGTTCTGCACGCACCAGTGGTACGCCGGGCTCTACAAAAAGC
TGCTGCGGGACACACTCCGGCGGCAGCCGCAGCTCATGGCGCTGGTGCAG
CCGCCGCCGCCGCCGCCGCCGGTCAGCTTACCGCCGACGACCATGATGGC
CGGAATGCCGTCGATCCCGCCGGACATGCTGGGGGGCCACACGGCGGCGT
CGTTTGCGGCGGTGGCGGCGACGGGGAACCCCGCGGCGGCTGCAGCGCTC
GCCCACCTGCTGGCGGCGACGAACCGGGGCGGCAGTGGCGGCGGTCCCAG
CAGTCAAAGCAGTCAGAGCGGTCCGAACGGCGCCGGCGGCGGTGCGGGTG
ATGCCAGTAACGATCCCGGAAGAGGCTTCGGCGCCATGGGCGGGCCGGTG
GGTGCTGCGGGCCAGCCGCAGGTACGGCCCCCGATGGGCCCTGGTGGCGT
CGATATTCTCTCAATCTCGCCCACCAAAGGCGGCGGCGGCAGCCACGCCT
GGTGGGCGGAGAACAACGGCACCGCCGCCGGTGGTGGAGTGCACGGCCAC
GGCGGGGGCAGCAGCGGGGGGTGTAACTCCGCGGCAGCTGTGGCAGCAGC
AGCGGCTGCGCTGAGCCCGCGGAGCCGGGCGGCTGCACACGAGTGGGCGG
CGGCGTGGAACGAGCGGGCGCGGCACCCGCCACCGCCGGAGGTTGCGGCG
GCCGGAACGGCGGCGGTGGTGGCATACTACGAGAAGCTTCTGGCGGCGGC
GGCGACTGCGCAATTCCCGGTCGACGCCGTGCTGCTCAGCACCGTCGAGG
CGCGCCTGCAACACGCGCAGCGGCAGCATGCTGCCGATGCCGCTCACGCT
GCGCACGCGTACGCCACCGGTTCGGTGGGCGGCTCGGCGGCGCCGCTGCA
GCCTTCGATGGCAGAGAAGCTGGAGGCGGCGGCAGCGGCAGCAGCGGCGG
GCGTAGACGGCAGCAACTCTGGCGGCGACGTCAAGGGTGATGATGGGGTC
AAGATGGAGGAAGCTGCGCAAGCTGCGGGAGCGGAGGCGGCGGCGGCGGC
GGCGGAAACCGGCGAGGGGGCGGCGAAGGCAGGGGCGACGGGAGCTGGTG
CTGGCGGGGAAAGCATTGTTGTCAAGGGCGAGGGAGAGGCTAAATCGGCT
ACCAACGACGCGACGGACGGTGCGGTCAAGGCGGAGGCAGCGGATGAGGA
TGGCACCGCCAAAGTTAAGGCGGAAGGGCAAGACAGCAAGGAAACTGCCG
CCGCTGCTGTCGCTGCCGCCGATAGCGACGAGGTTTCTACATCCGACGGC
TGCAACGCCGCCACGACTCACGGCAGCTCCGGCGCCACCGACAGCACAGG
GGCTGATGGCACCGCTGCGACCGATGCTACCAGTGCTGCTGACGGCGCCA
CCGCCGCGGCCGACGGGGCG
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