mRNA_P-wetherbeei_contig976.3.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig976.3.3
Unique NamemRNA_P-wetherbeei_contig976.3.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig976.3.3 vs. uniprot
Match: D7G5M9_ECTSI (STI1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.780e-12
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 2 
Query:  944 DLLNKIIGNPKAMAAFQRAQRNSKVMSALQDVMKNGIGALGKYQKDPDIRDTLNELKDLW 1123
            D++ K++ NPKAM AFQ+AQ N  VM+A+QDV +NG+ A+ KYQ DP+I   + ELK L+
Sbjct:   26 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 85
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BLAST of mRNA_P-wetherbeei_contig976.3.3 vs. uniprot
Match: D7G4D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.070e-9
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 2 
Query:  944 DLLNKIIGNPKAMAAFQRAQRNSKVMSALQDVMKNGIGALGKYQKDPDIRDTLNELKDLW 1123
            D++ K++ NPKAM AFQ+AQ N  VM+A+QDV +NG+ A+ KYQ DP+I   + ELK L+
Sbjct:  828 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 887
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BLAST of mRNA_P-wetherbeei_contig976.3.3 vs. uniprot
Match: D7G5D2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.670e-9
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 2 
Query:  236 AGMSVKEIKKELQSRGVPFQDLFEKNELVERLADART--RPRVEETGAARAADAASVARAEVAAMSVRDIKGELDTRGVSYRGLFEKGEVVELLLDARA 526
            A M+  +IK EL + GV +  L EK+E V +LA+A    + + EE  +    DAA     E +AM V  IK ELD RGV YRGLFEK E V+LL+DARA
Sbjct:  270 ARMTAGQIKAELDALGVSYVSLLEKSEFVMKLAEAEDEKKEKXEEAASPAGEDAAD----EASAMLVSAIKEELDERGVRYRGLFEKSEFVDLLVDARA 364
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BLAST of mRNA_P-wetherbeei_contig976.3.3 vs. uniprot
Match: A0A4D9CNM3_9STRA (Tyrosine--tRNA ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNM3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.420e-6
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:  947 LLNKIIGNPKAMAAFQRAQRNSKVMSALQDVMKNGIGALGKYQKDPDIRDTLNEL 1111
            +L  I+ NP+A AAFQRAQRN KVM+ALQDV+ N  G   KY  D +I   LNEL
Sbjct:  357 MLASIMSNPRAQAAFQRAQRNPKVMAALQDVLANP-GNFSKYANDKEISSILNEL 410
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BLAST of mRNA_P-wetherbeei_contig976.3.3 vs. uniprot
Match: A0A836CC67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC67_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.740e-6
Identity = 44/109 (40.37%), Postives = 55/109 (50.46%), Query Frame = 2 
Query:  242 MSVKEIKKELQSRGVPFQDLFEKNELVERLADARTRPRVEETGAAR--------------AADAASVARAEVAAMSVRDIKGELDTRGVSYRGLFEKGEVVELLLDARA 526
            M   EIK EL S GV + D FEK+ELV RLA+A+  P                       AA   + +  E+ +M + +IK EL+ RGV Y GL EK E V  L DARA
Sbjct:   51 MRASEIKAELDSMGVRYDDCFEKSELVARLAEAKANPAAAXXXXXXXXXXXXXXXXXXXXAAGGRAGSIGEIQSMRMSEIKKELEERGVDYSGLLEKSEFVARLADARA 159
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BLAST of mRNA_P-wetherbeei_contig976.3.3 vs. uniprot
Match: A0A7S0DDV7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DDV7_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 4.200e-6
Identity = 48/146 (32.88%), Postives = 67/146 (45.89%), Query Frame = 2 
Query:  209 AEPDEVAAVAGMSVKEIKKELQSRGVPFQDLFEKNELVERLADART-------RPRVEETGAARAADAAS----------------------------------VARAEVAAMSVRDIKGELDTRGVSYRGLFEKGEVVELLLDAR 523
            A+ D +A +  M V EI+KEL   GV ++DL EK E VERL  ART       + +  E     ++ A S                                   A+ +V+ M +++IK ELD RGV Y+GL EK E V LL+ A+
Sbjct:   98 ADADILAGIKKMRVSEIRKELDDFGVRYKDLLEKKEYVERLYQARTGTIDPQYKTKPGEASGPTSSTAQSGFSASSKGXXXXXXXXXXXXXXXXXXXXXKITKEEAKEQVSKMKIKEIKAELDERGVDYKGLLEKSEYVNLLVQAK 243
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BLAST of mRNA_P-wetherbeei_contig976.3.3 vs. uniprot
Match: A0A7S0M574_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M574_9CRYP)

HSP 1 Score: 58.2 bits (139), Expect = 1.150e-5
Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = 2 
Query:  242 MSVKEIKKELQSRGVPFQDLFEKNELVERLADARTRP--RVEETGAARAADAASV-------------------ARAEVAAMSVRDIKGELDTRGVSYRGLFEKGEVVELLLDARA 526
            MSV++IK EL  RGV + DLFEK++ V+RL  AR +    V+ + ++ +A  ++V                    R EV  M +  I+ EL   GVS +G FEK E V+LL  ARA
Sbjct:   75 MSVRDIKAELDRRGVKYSDLFEKSDFVQRLVQARGKDAANVDHSASSESARKSTVDNVDHVPRGGQASSTPDQAIRKEVETMPLAAIRSELSKLGVSTQGAFEKREFVDLLCKARA 190
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BLAST of mRNA_P-wetherbeei_contig976.3.3 vs. uniprot
Match: A0A0M0JM96_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JM96_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 2.460e-5
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 2 
Query:  221 EVAAVAGMSVKEIKKELQSRGVPFQDL-FEKNELVERLADARTRPRVEET----------------GAARAADAASVARAE---VAAMSVRDIKGELDTRGVSYRGLFEKGEVVELLLDARA 526
            E  ++  M +KE+K EL  RGV ++ + FEK EL   L DAR+RP                      A  A DAA  +R+    V  M V DIK EL + GV    LFEK E+V  L+ ARA
Sbjct:    4 EAPSILSMRLKELKDELDKRGVTWRGIAFEKEELARLLVDARSRPPASSAPXXXXXXXXXXXXXXXXAKAAQDAAWASRSSMGNVETMKVADIKAELKSLGVDTSALFEKTELVAALIKARA 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig976.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G5M9_ECTSI2.780e-1253.33STI1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4D5_ECTSI1.070e-953.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5D2_ECTSI2.670e-948.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CNM3_9STRA2.420e-658.18Tyrosine--tRNA ligase n=1 Tax=Nannochloropsis sali... [more]
A0A836CC67_9STRA2.740e-640.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0DDV7_9EUKA4.200e-632.88Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S0M574_9CRYP1.150e-537.93Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0M0JM96_9EUKA2.460e-538.52Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig976contigP-wetherbeei_contig976:4071..5930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4D5
PFAMsBeach,DUF223,DUF4704,ELMO_CED12,Laminin_G_3,PH_BEACH,Rep_fac-A_C
Model size1681
Max annot lvl2759|Eukaryota
KEGG koko:K22262
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.36e-12
EggNOG OGsKOG1787@1|root,KOG1787@2759|Eukaryota
Descriptionplatelet formation
Cds size1029
COG categoryS
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187108.7752903-UTR-P-wetherbeei_contig976:4070..41671683187108.7752903-UTR-P-wetherbeei_contig976:4070..4167Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig976 4071..4167 +
1683187108.8073125-UTR-P-wetherbeei_contig976:5375..59301683187108.8073125-UTR-P-wetherbeei_contig976:5375..5930Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig976 5376..5930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187108.7863941-CDS-P-wetherbeei_contig976:4167..50661683187108.7863941-CDS-P-wetherbeei_contig976:4167..5066Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig976 4168..5066 +
1683187108.7971554-CDS-P-wetherbeei_contig976:5245..53751683187108.7971554-CDS-P-wetherbeei_contig976:5245..5375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig976 5246..5375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig976.3.3prot_P-wetherbeei_contig976.3.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig976 4168..5375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig976.3.3

>prot_P-wetherbeei_contig976.3.3 ID=prot_P-wetherbeei_contig976.3.3|Name=mRNA_P-wetherbeei_contig976.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=343bp
MRRLFPSSVPLFLPTSFIFLPGPFYRSRQLPLRVQLRAEPDEVAAVAGMS
VKEIKKELQSRGVPFQDLFEKNELVERLADARTRPRVEETGAARAADAAS
VARAEVAAMSVRDIKGELDTRGVSYRGLFEKGEVVELLLDARAAAAAAGT
GDEQGSAAGPSGAAEEAYDSSFRDVEGENAEERFPFSSFDPSPEELSVCR
QVTLLLLQPTTCCFLLQSVKRMTNRKAQQQESPPRGGVGGGGGGGIGGMS
MEDLLGGMGMGGMGPRGRRRGGDFGGGGAGQSDLLNKIIGNPKAMAAFQR
AQRNSKVMSALQDVMKNGIGALGKYQKDPDIRDTLNELKDLW*
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mRNA from alignment at P-wetherbeei_contig976:4071..5930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig976.3.3 ID=mRNA_P-wetherbeei_contig976.3.3|Name=mRNA_P-wetherbeei_contig976.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1860bp|location=Sequence derived from alignment at P-wetherbeei_contig976:4071..5930+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGTCAATGAAGTGCACAAAACTGTTAATCGCACCAATCGGATTCACTG
TACGATGTGGCGCTTTCGTCGCGCCTCTTTGTCAAAGGTAAAGGGCGATG
CGAAGACTCTTTCCCTCTTCCGTCCCCCTCTTTCTTCCAACTTCTTTCAT
ATTTTTACCCGGCCCTTTCTACCGCTCCAGGCAACTGCCTTTGCGTGTGC
AGCTTCGAGCCGAGCCAGACGAAGTGGCCGCGGTCGCCGGAATGAGTGTG
AAAGAGATAAAGAAAGAGTTGCAGAGTCGTGGAGTTCCATTTCAGGACTT
GTTTGAGAAAAACGAGCTGGTGGAGCGGCTTGCAGATGCGCGCACTCGCC
CAAGAGTGGAAGAAACTGGCGCGGCTCGCGCGGCGGATGCAGCCTCAGTG
GCTCGCGCCGAGGTCGCCGCAATGTCCGTTCGGGACATCAAGGGGGAGCT
TGACACTCGGGGAGTGTCGTATCGAGGCCTTTTCGAGAAGGGTGAGGTCG
TCGAATTGTTATTAGATGCTCGAGCCGCCGCCGCCGCTGCAGGCACTGGC
GACGAGCAGGGGTCGGCGGCCGGCCCTTCCGGAGCCGCAGAGGAGGCCTA
CGATTCGTCTTTCCGAGACGTCGAAGGTGAGAATGCAGAAGAGCGATTTC
CATTTTCCTCTTTCGACCCTTCCCCGGAGGAGTTATCTGTTTGCCGCCAA
GTAACGCTTCTTCTTCTTCAACCAACTACCTGTTGCTTCCTCTTGCAATC
AGTCAAGCGAATGACAAACCGTAAAGCACAGCAACAAGAGTCTCCGCCGC
GTGGCGGCGTGGGAGGCGGAGGTGGCGGCGGCATCGGGGGAATGTCGATG
GAAGACCTTCTTGGCGGAATGGGAATGGGAGGTATGGGCCCACGAGGACG
ACGAAGGGGCGGCGACTTCGGCGGTGGTGGGGCCGGCCAGAGTGACCTCT
TGAATAAGATTATTGGTAATCCAAAGGCCATGGCAGCATTCCAAAGGTGA
GAGAGAGAAAGCGAGCGGGCTGGAGTCCGCCGCATTTCTGTACTATGATC
CAAACACCTGAAGGGCACGGTAGCTCTAGAAGGCGAGGGAGAGCGCGTGG
GTTGCAGTCTGCTACGGTTGTCCATTGGAAGCCAAAGCTGACGAACTCCT
TGTCTACTTCCTTCATCTGCTGCAGAGCGCAACGGAATTCCAAGGTGATG
AGCGCATTGCAGGACGTCATGAAGAATGGCATCGGCGCCCTCGGCAAGTA
CCAAAAAGATCCGGACATTCGGGATACACTCAATGAGCTCAAGGACCTGT
GGTGAGGTTTCTTGCTGGAATAGCTTGCGATTGGTGCATGCCCCGCGCAT
ATATCGCATGGTGGCGAAACGGCACGTCAAATGAGACCCTTGGCCTCCGA
GTCAAGGTGCGACGGGTGCGGCCCGCGTAGGGGTTGGGTACAGCGACATT
TGTCACAAGTGGCAGTGCAAGAAGAAAAACTATACCAAATTTTTCGGAAA
ATTCGACGCTTTTGTCACAATGAGGTGTTGCAGACTTTATGGCTGCCTAA
TTGCTCCACGGCCGACTTGCCCAAGGTACCGAGGTGCAGTTAGTGCTCTC
GGCACCTCGTTCATGCAGCGGGAGCCTCCGCGCCGACCGCGGCGGCGGCT
TTGCGTCCGAGCATGGCAGTCTTGAGTCGCTCGATCTGCTGGAGGGGCGC
CTTATTCCCGCCGACCTCGAAACCAGCCATTTTGTAGACGTGCACGGCGC
CAGAAGCGTGACCTGTTGTTTGTCACACATGGAAAATGAGGATAGGGCGC
CGAAACGATCAAACTAACGCTTTTATTGGGGCACGAAATGCAGCGCAAGA
CTGCTGGGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig976:4071..5930+

>mRNA_P-wetherbeei_contig976.3.3 ID=mRNA_P-wetherbeei_contig976.3.3|Name=mRNA_P-wetherbeei_contig976.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1029bp|location=Sequence derived from alignment at P-wetherbeei_contig976:4071..5930+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAAGACTCTTTCCCTCTTCCGTCCCCCTCTTTCTTCCAACTTCTTT
CATATTTTTACCCGGCCCTTTCTACCGCTCCAGGCAACTGCCTTTGCGTG
TGCAGCTTCGAGCCGAGCCAGACGAAGTGGCCGCGGTCGCCGGAATGAGT
GTGAAAGAGATAAAGAAAGAGTTGCAGAGTCGTGGAGTTCCATTTCAGGA
CTTGTTTGAGAAAAACGAGCTGGTGGAGCGGCTTGCAGATGCGCGCACTC
GCCCAAGAGTGGAAGAAACTGGCGCGGCTCGCGCGGCGGATGCAGCCTCA
GTGGCTCGCGCCGAGGTCGCCGCAATGTCCGTTCGGGACATCAAGGGGGA
GCTTGACACTCGGGGAGTGTCGTATCGAGGCCTTTTCGAGAAGGGTGAGG
TCGTCGAATTGTTATTAGATGCTCGAGCCGCCGCCGCCGCTGCAGGCACT
GGCGACGAGCAGGGGTCGGCGGCCGGCCCTTCCGGAGCCGCAGAGGAGGC
CTACGATTCGTCTTTCCGAGACGTCGAAGGTGAGAATGCAGAAGAGCGAT
TTCCATTTTCCTCTTTCGACCCTTCCCCGGAGGAGTTATCTGTTTGCCGC
CAAGTAACGCTTCTTCTTCTTCAACCAACTACCTGTTGCTTCCTCTTGCA
ATCAGTCAAGCGAATGACAAACCGTAAAGCACAGCAACAAGAGTCTCCGC
CGCGTGGCGGCGTGGGAGGCGGAGGTGGCGGCGGCATCGGGGGAATGTCG
ATGGAAGACCTTCTTGGCGGAATGGGAATGGGAGGTATGGGCCCACGAGG
ACGACGAAGGGGCGGCGACTTCGGCGGTGGTGGGGCCGGCCAGAGTGACC
TCTTGAATAAGATTATTGGTAATCCAAAGGCCATGGCAGCATTCCAAAGA
GCGCAACGGAATTCCAAGGTGATGAGCGCATTGCAGGACGTCATGAAGAA
TGGCATCGGCGCCCTCGGCAAGTACCAAAAAGATCCGGACATTCGGGATA
CACTCAATGAGCTCAAGGACCTGTGGTGA
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