mRNA_P-wetherbeei_contig9711.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9711.3.1
Unique NamemRNA_P-wetherbeei_contig9711.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig9711.3.1 vs. uniprot
Match: A0A6H5KJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ20_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.840e-11
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 DHAWFLFQFVHVALNAIYICSVLGLPTLHAVYSNAATGDLALLCVFSFLWGSGTLFYVLGIDLLGAGLGVS 213
            ++ W  F      LNAI+  SV+G   L AVY  A+  DL L+C FSFLWGSGT  + LGI LLGAG G +
Sbjct:   47 ENVWLPFIIHSTVLNAIFCVSVVGPDALLAVYREASPVDLGLVCTFSFLWGSGTACFSLGIQLLGAGPGTA 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9711.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ20_9PHAE1.840e-1150.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9711contigP-wetherbeei_contig9711:2272..2484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog38833.XP_003061205.1
Model size213
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.9e-05
EggNOG OGsCOG0697@1|root,2SCAI@2759|Eukaryota
Descriptionpyrimidine nucleotide-sugar transmembrane transport
Cds size213
COG categoryEG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187106.83757-CDS-P-wetherbeei_contig9711:2271..24841683187106.83757-CDS-P-wetherbeei_contig9711:2271..2484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9711 2272..2484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9711.3.1prot_P-wetherbeei_contig9711.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9711 2272..2484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9711.3.1

>prot_P-wetherbeei_contig9711.3.1 ID=prot_P-wetherbeei_contig9711.3.1|Name=mRNA_P-wetherbeei_contig9711.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
DHAWFLFQFVHVALNAIYICSVLGLPTLHAVYSNAATGDLALLCVFSFLW
GSGTLFYVLGIDLLGAGLGVS
back to top

mRNA from alignment at P-wetherbeei_contig9711:2272..2484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9711.3.1 ID=mRNA_P-wetherbeei_contig9711.3.1|Name=mRNA_P-wetherbeei_contig9711.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig9711:2272..2484+ (Phaeothamnion wetherbeei SAG_119_79)
GATCATGCGTGGTTCTTGTTTCAATTCGTCCACGTGGCGCTGAACGCCAT
CTACATCTGCAGCGTCCTCGGCCTGCCGACTCTCCACGCCGTCTACAGCA
ACGCAGCCACCGGCGACCTCGCGTTGCTCTGCGTCTTCTCGTTCCTTTGG
GGAAGTGGGACCCTTTTTTACGTCTTGGGGATCGACCTGCTCGGTGCAGG
CTTGGGGGTGAGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9711:2272..2484+

>mRNA_P-wetherbeei_contig9711.3.1 ID=mRNA_P-wetherbeei_contig9711.3.1|Name=mRNA_P-wetherbeei_contig9711.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig9711:2272..2484+ (Phaeothamnion wetherbeei SAG_119_79)
GATCATGCGTGGTTCTTGTTTCAATTCGTCCACGTGGCGCTGAACGCCAT
CTACATCTGCAGCGTCCTCGGCCTGCCGACTCTCCACGCCGTCTACAGCA
ACGCAGCCACCGGCGACCTCGCGTTGCTCTGCGTCTTCTCGTTCCTTTGG
GGAAGTGGGACCCTTTTTTACGTCTTGGGGATCGACCTGCTCGGTGCAGG
CTTGGGGGTGAGC
back to top