mRNA_P-wetherbeei_contig9691.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9691.1.1
Unique NamemRNA_P-wetherbeei_contig9691.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9691.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9691contigP-wetherbeei_contig9691:544..1601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1060
Hectar predicted targeting categoryother localisation
Exons1
Cds size990
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.7380054-UTR-P-wetherbeei_contig9691:543..6111683187105.7380054-UTR-P-wetherbeei_contig9691:543..611Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9691 544..611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.7571995-CDS-P-wetherbeei_contig9691:611..16011683187105.7571995-CDS-P-wetherbeei_contig9691:611..1601Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9691 612..1601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9691.1.1prot_P-wetherbeei_contig9691.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9691 612..1601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9691.1.1

>prot_P-wetherbeei_contig9691.1.1 ID=prot_P-wetherbeei_contig9691.1.1|Name=mRNA_P-wetherbeei_contig9691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp
MTAASRHAASRGTGAKTSSGPIEASREEVLDSFASQVTWELIHKKLTPGG
GGGESAGPSLACNTILEDDALWAALEGLGDDARARALCCADARFAAATQQ
MLHTLQQIGNGCGGAVFLCLEEDLRFLTGDSTLNTGSCGAAGAGSATRSR
HGYGIEGAGRQFAFRPIRVEGGIGCGSASARGRGETAAAGSGGGGGGGGG
GGGGSVAASWLLSHCLLDGADCCLISSAGVADVPLLRRRLSAVMKRQLWC
LDVKRAPEACISGFASGAAGAADGALIQTLPLWGAVTALSLAAVIARRIL
VNLSDNLFGVAGTPIAARPPSSLSCAHTPS
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mRNA from alignment at P-wetherbeei_contig9691:544..1601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9691.1.1 ID=mRNA_P-wetherbeei_contig9691.1.1|Name=mRNA_P-wetherbeei_contig9691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1058bp|location=Sequence derived from alignment at P-wetherbeei_contig9691:544..1601+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAAGGCAGGATCTTTGCGTGCTGCGATGTTTTCCCATAGATAACGGGT
TGGAAGGTGTCAGGAGAGATGACAGCAGCTTCGAGGCACGCTGCTTCGCG
AGGAACCGGCGCCAAAACCTCGTCTGGCCCAATCGAGGCGAGCAGAGAGG
AAGTTCTTGACAGCTTTGCGTCCCAGGTCACATGGGAGCTCATTCACAAG
AAGCTCACGCCTGGTGGAGGCGGAGGCGAGAGCGCTGGCCCGAGCCTGGC
GTGTAACACGATCCTTGAAGACGATGCGCTCTGGGCGGCACTCGAAGGAC
TCGGGGACGACGCGAGGGCGCGGGCTTTATGCTGTGCGGATGCTCGTTTC
GCCGCCGCGACGCAGCAGATGCTGCATACGCTGCAGCAGATCGGCAATGG
ATGCGGCGGCGCCGTTTTTCTGTGCTTGGAAGAGGATCTTCGCTTCTTGA
CAGGCGACAGCACACTTAACACGGGCTCGTGCGGAGCCGCTGGCGCTGGT
TCCGCGACGCGCTCGCGCCACGGCTACGGGATCGAAGGCGCCGGGCGGCA
ATTCGCGTTTCGCCCCATCAGGGTCGAAGGTGGCATAGGCTGTGGTTCGG
CTTCAGCCCGCGGCCGCGGCGAGACCGCTGCCGCCGGCAGCGGCGGCGGC
GGTGGCGGTGGTGGCGGAGGAGGAGGAGGATCCGTGGCGGCATCATGGCT
CCTGTCGCATTGCCTTCTCGACGGCGCCGACTGCTGCCTCATCTCGTCGG
CGGGTGTTGCCGACGTCCCGCTGCTGCGGCGCCGCCTCTCCGCGGTCATG
AAGCGTCAGCTATGGTGCCTCGACGTGAAGCGCGCCCCCGAGGCGTGTAT
CTCCGGCTTTGCCAGCGGCGCTGCCGGCGCTGCCGACGGCGCCCTCATCC
AGACCCTGCCCTTGTGGGGCGCGGTGACGGCGCTGTCGCTGGCCGCGGTC
ATCGCGCGCCGCATCCTCGTAAACCTCAGCGATAACTTGTTCGGCGTCGC
CGGGACGCCCATTGCGGCCCGCCCGCCGTCGTCGTTGTCTTGCGCCCACA
CGCCATCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9691:544..1601+

>mRNA_P-wetherbeei_contig9691.1.1 ID=mRNA_P-wetherbeei_contig9691.1.1|Name=mRNA_P-wetherbeei_contig9691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig9691:544..1601+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGCAGCTTCGAGGCACGCTGCTTCGCGAGGAACCGGCGCCAAAAC
CTCGTCTGGCCCAATCGAGGCGAGCAGAGAGGAAGTTCTTGACAGCTTTG
CGTCCCAGGTCACATGGGAGCTCATTCACAAGAAGCTCACGCCTGGTGGA
GGCGGAGGCGAGAGCGCTGGCCCGAGCCTGGCGTGTAACACGATCCTTGA
AGACGATGCGCTCTGGGCGGCACTCGAAGGACTCGGGGACGACGCGAGGG
CGCGGGCTTTATGCTGTGCGGATGCTCGTTTCGCCGCCGCGACGCAGCAG
ATGCTGCATACGCTGCAGCAGATCGGCAATGGATGCGGCGGCGCCGTTTT
TCTGTGCTTGGAAGAGGATCTTCGCTTCTTGACAGGCGACAGCACACTTA
ACACGGGCTCGTGCGGAGCCGCTGGCGCTGGTTCCGCGACGCGCTCGCGC
CACGGCTACGGGATCGAAGGCGCCGGGCGGCAATTCGCGTTTCGCCCCAT
CAGGGTCGAAGGTGGCATAGGCTGTGGTTCGGCTTCAGCCCGCGGCCGCG
GCGAGACCGCTGCCGCCGGCAGCGGCGGCGGCGGTGGCGGTGGTGGCGGA
GGAGGAGGAGGATCCGTGGCGGCATCATGGCTCCTGTCGCATTGCCTTCT
CGACGGCGCCGACTGCTGCCTCATCTCGTCGGCGGGTGTTGCCGACGTCC
CGCTGCTGCGGCGCCGCCTCTCCGCGGTCATGAAGCGTCAGCTATGGTGC
CTCGACGTGAAGCGCGCCCCCGAGGCGTGTATCTCCGGCTTTGCCAGCGG
CGCTGCCGGCGCTGCCGACGGCGCCCTCATCCAGACCCTGCCCTTGTGGG
GCGCGGTGACGGCGCTGTCGCTGGCCGCGGTCATCGCGCGCCGCATCCTC
GTAAACCTCAGCGATAACTTGTTCGGCGTCGCCGGGACGCCCATTGCGGC
CCGCCCGCCGTCGTCGTTGTCTTGCGCCCACACGCCATCC
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