mRNA_P-wetherbeei_contig9679.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9679.2.1
Unique NamemRNA_P-wetherbeei_contig9679.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Match: A0A4Y7LZX4_9CRUS (EOG090X07B6 n=1 Tax=Ceriodaphnia reticulata TaxID=302197 RepID=A0A4Y7LZX4_9CRUS)

HSP 1 Score: 69.3 bits (168), Expect = 6.640e-11
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 ERKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYLMFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVKQ 270
            E+ D EG+L +  RS  P+H  VVMNRLS +NL +P+T  L + +  P+L++++   +         G+WF+ ++E   IAQ L+ LVK+
Sbjct:   44 EKTDVEGTLFLYARSGDPKHGFVVMNRLSTENLVEPITRDLEIQLQAPFLLYKNAKSIT--------GVWFYEESECTRIAQKLEALVKE 125
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BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Match: E9FTR2_DAPPU (Uncharacterized protein n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9FTR2_DAPPU)

HSP 1 Score: 66.2 bits (160), Expect = 1.820e-10
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 ERKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYLMFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVK 267
            E+ D EG+L +  RS  P H  VVMNRLS +NL +P+T  L + +  P+L++++      +T     G+WF+ ++E   IAQ L+ LVK
Sbjct:   46 EKTDVEGTLFLYARSGDPRHGFVVMNRLSTENLVEPITRDLEIQLQAPFLLYKNAK--LSIT-----GVWFYEESECTRIAQKLEALVK 127
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BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Match: UPI001C34A92F ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C34A92F)

HSP 1 Score: 65.1 bits (157), Expect = 2.860e-10
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 ERKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYLMFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVKQHKA 279
            E+ + EG+L +  R  +P H   +MNRLS +NLT+P+T  L   +  P+L++++   V        HGIWF+   +   IAQ + +L +Q +A
Sbjct:   56 EKTEVEGTLFIYTRLASPRHGFTIMNRLSMENLTEPITKDLDFQLQHPFLLYRNARLVI-------HGIWFYDKEDCQRIAQRMKILTQQEQA 141
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BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Match: A0A4Y7LVC3_9CRUS (EOG090X07B6 n=2 Tax=Daphnia similis TaxID=35528 RepID=A0A4Y7LVC3_9CRUS)

HSP 1 Score: 67.0 bits (162), Expect = 3.340e-10
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 ERKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYLMFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVKQ 270
            E+ D EG+L +  RS  P H  VVMNRLS +NL +P+T  L + +  P+L++++      +T     G+WF+ ++E   IAQ L+ LVK+
Sbjct:   44 EKTDVEGTLFLYARSGDPRHGFVVMNRLSTENLVEPITRDLEIQLQAPFLLYKNAK--LSIT-----GVWFYEESECTRIAQKLEALVKE 126
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BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Match: A0A225WPJ9_9STRA (mRNA_decap_C domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WPJ9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.360e-10
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    4 RKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYLMFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVKQHKA 279
            RKD EG L VV+RS+AP  Q+ V NRLS  N+T P+   L V   + +L+ +S D  Y   +   +GIWF  + +R  I Q L  L++  KA
Sbjct:   52 RKDVEGCLFVVKRSSAPRFQIFVNNRLSTTNMTLPLDEHLEVDNVDSFLILRSPDAAYATGYA-IYGIWFFPEEDRAKILQLLQRLIQSLKA 142
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BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Match: A0A4Y7M547_9CRUS (EOG090X07B6 n=2 Tax=Daphnia TaxID=6668 RepID=A0A4Y7M547_9CRUS)

HSP 1 Score: 67.0 bits (162), Expect = 3.660e-10
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 ERKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYLMFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVKQ 270
            E+ D EG+L +  RS  P H  VVMNRLS +NL +P+T  L + +  P+L++++      +T     G+WF+ ++E   IAQ L+ LVK+
Sbjct:   44 EKTDVEGTLFLYARSGDPRHGFVVMNRLSTENLVEPITRDLEIQLQAPFLLYKNAK--LSIT-----GVWFYEESECTRIAQKLEALVKE 126
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BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Match: A0A4Y7ML68_9CRUS (EOG090X07B6 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A4Y7ML68_9CRUS)

HSP 1 Score: 67.0 bits (162), Expect = 3.780e-10
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 ERKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYLMFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVKQ 270
            E+ D EG+L +  RS  P H  VVMNRLS +NL +P+T  L + +  P+L++++      +T     G+WF+ ++E   IAQ L+ LVK+
Sbjct:   44 EKTDVEGTLFLYARSGDPRHGFVVMNRLSTENLVEPITRDLEIQLQAPFLLYKNAK--LSIT-----GVWFYEESECTRIAQKLEALVKE 126
[Close]
BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Match: A0A4Y7MN18_9CRUS (EOG090X07B6 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A4Y7MN18_9CRUS)

HSP 1 Score: 67.0 bits (162), Expect = 4.080e-10
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 ERKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYLMFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVKQ 270
            E+ D EG+L +  RS  P H  VVMNRLS +NL +P+T  L + +  P+L++++      +T     G+WF+ ++E   IAQ L+ LVK+
Sbjct:   44 EKTDVEGTLFLYARSGDPRHGFVVMNRLSTENLVEPITRDLEIQLQAPFLLYKNAK--LSIT-----GVWFYEESECTRIAQKLEALVKE 126
[Close]
BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Match: A0A4Y7LXU0_9CRUS (EOG090X07B6 n=1 Tax=Daphnia barbata TaxID=414587 RepID=A0A4Y7LXU0_9CRUS)

HSP 1 Score: 67.0 bits (162), Expect = 4.130e-10
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 ERKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYLMFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVKQ 270
            E+ D EG+L +  RS  P H  VVMNRLS +NL +P+T  L + +  P+L++++      +T     G+WF+ ++E   IAQ L+ LVK+
Sbjct:   44 EKTDVEGTLFLYARSGDPRHGFVVMNRLSTENLVEPITRDLEIQLQAPFLLYKNAK--LSIT-----GVWFYEESECTRIAQKLEALVKE 126
[Close]
BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Match: A0A4Y7NA27_9CRUS (EOG090X07B6 n=4 Tax=Daphnia sinensis TaxID=1820382 RepID=A0A4Y7NA27_9CRUS)

HSP 1 Score: 67.0 bits (162), Expect = 4.430e-10
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 ERKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYLMFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVKQ 270
            E+ D EG+L +  RS  P H  VVMNRLS +NL +P+T  L + +  P+L++++      +T     G+WF+ ++E   IAQ L+ LVK+
Sbjct:   44 EKTDVEGTLFLYARSGDPRHGFVVMNRLSTENLVEPITRDLEIQLQAPFLLYKNAK--LSIT-----GVWFYEESECTRIAQKLEALVKE 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9679.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y7LZX4_9CRUS6.640e-1137.78EOG090X07B6 n=1 Tax=Ceriodaphnia reticulata TaxID=... [more]
E9FTR2_DAPPU1.820e-1039.33Uncharacterized protein n=1 Tax=Daphnia pulex TaxI... [more]
UPI001C34A92F2.860e-1034.41(large yellow croaker) hypothetical protein n=1 Ta... [more]
A0A4Y7LVC3_9CRUS3.340e-1038.89EOG090X07B6 n=2 Tax=Daphnia similis TaxID=35528 Re... [more]
A0A225WPJ9_9STRA3.360e-1041.30mRNA_decap_C domain-containing protein n=1 Tax=Phy... [more]
A0A4Y7M547_9CRUS3.660e-1038.89EOG090X07B6 n=2 Tax=Daphnia TaxID=6668 RepID=A0A4Y... [more]
A0A4Y7ML68_9CRUS3.780e-1038.89EOG090X07B6 n=1 Tax=Daphnia magna TaxID=35525 RepI... [more]
A0A4Y7MN18_9CRUS4.080e-1038.89EOG090X07B6 n=1 Tax=Daphnia magna TaxID=35525 RepI... [more]
A0A4Y7LXU0_9CRUS4.130e-1038.89EOG090X07B6 n=1 Tax=Daphnia barbata TaxID=414587 R... [more]
A0A4Y7NA27_9CRUS4.430e-1038.89EOG090X07B6 n=4 Tax=Daphnia sinensis TaxID=1820382... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9679contigP-wetherbeei_contig9679:271..965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2V2
Preferred nameDCP1A
PFAMsDCP1,mRNA_decap_C
Model size471
Max annot lvl2759|Eukaryota
KEGG koko:K12610,ko:K12611,ko:K12612,ko:K12655
KEGG Pathwayko03018,ko04622,map03018,map04622
KEGG ModuleM00395
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000184,GO:0000288,GO:0000290,GO:0000291,GO:0000578,GO:0000932,GO:0000956,GO:0002119,GO:0002164,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006979,GO:0007028,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007350,GO:0007351,GO:0007389,GO:0007568,GO:0008047,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0008358,GO:0008595,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009628,GO:0009719,GO:0009790,GO:0009791,GO:0009798,GO:0009880,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010033,GO:0010259,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010603,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019094,GO:0019219,GO:0019222,GO:0019439,GO:0019894,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030234,GO:0031047,GO:0031086,GO:0031087,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034428,GO:0034518,GO:0034613,GO:0034641,GO:0034655,GO:0035194,GO:0035195,GO:0035282,GO:0035770,GO:0036464,GO:0040012,GO:0040029,GO:0042221,GO:0042802,GO:0043085,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043487,GO:0043488,GO:0043928,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044703,GO:0045451,GO:0045495,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0048468,GO:0048469,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051641,GO:0051704,GO:0051716,GO:0060147,GO:0060148,GO:0060255,GO:0060293,GO:0060810,GO:0060811,GO:0060964,GO:0060966,GO:0060968,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0098552,GO:0098562,GO:0098745,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902115,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1903608,GO:1990521,GO:1990904,GO:2000112,GO:2000637,GO:2001141
Exons2
Evalue5.22e-12
EggNOG OGsKOG2868@1|root,KOG2868@2759|Eukaryota
Ec32 ortholog descriptionmRNA decapping complex protein
Ec32 orthologEc-07_005620.1
EC3.4.19.12
DescriptionmRNA-decapping enzyme
Cds size471
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03019,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.277411-CDS-P-wetherbeei_contig9679:270..4451683187105.277411-CDS-P-wetherbeei_contig9679:270..445Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9679 271..445 +
1683187105.288809-CDS-P-wetherbeei_contig9679:669..9651683187105.288809-CDS-P-wetherbeei_contig9679:669..965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9679 670..965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9679.2.1prot_P-wetherbeei_contig9679.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9679 271..965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9679.2.1

>prot_P-wetherbeei_contig9679.2.1 ID=prot_P-wetherbeei_contig9679.2.1|Name=mRNA_P-wetherbeei_contig9679.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
ERKDAEGSLLVVRRSTAPEHQMVVMNRLSYQNLTQPVTAALRVAINEPYL
MFQSTDPVYVVTHGKTHGIWFHSDAERVAIAQCLDVLVKQHKAKAAAAAA
AATAAAAAATATAGMATASAATATAAATAATAAAAGAGEAPPWQKQLVQQ
PPPPQQQ
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mRNA from alignment at P-wetherbeei_contig9679:271..965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9679.2.1 ID=mRNA_P-wetherbeei_contig9679.2.1|Name=mRNA_P-wetherbeei_contig9679.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=695bp|location=Sequence derived from alignment at P-wetherbeei_contig9679:271..965+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGCAAAGACGCGGAAGGCAGCCTGCTCGTAGTGCGTCGATCAACGGC
CCCCGAGCATCAAATGGTGGTGATGAATCGGCTGAGCTACCAGAACTTAA
CGCAGCCAGTCACAGCGGCACTGCGCGTGGCCATCAACGAGCCATACCTC
ATGTTCCAGTCGACCGATCCGGTGTGTTACAGCTTTTCTGAAGGCCGCCT
AACTGCCTTCCCCCTTTTTGTCAATTTTTAGAACGGTTGACCAGTATGCG
ATTAAAGCTCTGAATCATAGGGATTTAACGTCTCATAGGACTAGCTGCTT
GGAAAGCATCGGGCAGCGAACCACATTTACCCGGAGCTTGCGCCTAAGTC
TATCGTAATCCGCTTGTACCGCCGTGGTCCGGCCAGTGCGCATTCGGAGA
CGTGGTGACGCACGGCAAAACGCACGGCATTTGGTTCCACAGCGACGCCG
AAAGGGTCGCCATCGCCCAGTGTCTCGATGTGTTGGTGAAGCAGCACAAA
GCCAAGGCGGCGGCGGCGGCAGCGGCGGCGACTGCTGCGGCGGCGGCCGC
CACGGCAACGGCAGGGATGGCGACTGCGAGCGCCGCGACGGCGACGGCAG
CAGCGACGGCGGCGACGGCGGCGGCAGCGGGAGCGGGAGAGGCGCCGCCA
TGGCAGAAGCAGCTGGTGCAGCAACCACCGCCACCGCAGCAACAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9679:271..965+

>mRNA_P-wetherbeei_contig9679.2.1 ID=mRNA_P-wetherbeei_contig9679.2.1|Name=mRNA_P-wetherbeei_contig9679.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig9679:271..965+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGCAAAGACGCGGAAGGCAGCCTGCTCGTAGTGCGTCGATCAACGGC
CCCCGAGCATCAAATGGTGGTGATGAATCGGCTGAGCTACCAGAACTTAA
CGCAGCCAGTCACAGCGGCACTGCGCGTGGCCATCAACGAGCCATACCTC
ATGTTCCAGTCGACCGATCCGGTGTACGTGGTGACGCACGGCAAAACGCA
CGGCATTTGGTTCCACAGCGACGCCGAAAGGGTCGCCATCGCCCAGTGTC
TCGATGTGTTGGTGAAGCAGCACAAAGCCAAGGCGGCGGCGGCGGCAGCG
GCGGCGACTGCTGCGGCGGCGGCCGCCACGGCAACGGCAGGGATGGCGAC
TGCGAGCGCCGCGACGGCGACGGCAGCAGCGACGGCGGCGACGGCGGCGG
CAGCGGGAGCGGGAGAGGCGCCGCCATGGCAGAAGCAGCTGGTGCAGCAA
CCACCGCCACCGCAGCAACAG
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