mRNA_P-wetherbeei_contig9667.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9667.1.1
Unique NamemRNA_P-wetherbeei_contig9667.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9667.1.1 vs. uniprot
Match: C1MU61_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MU61_MICPC)

HSP 1 Score: 56.2 bits (134), Expect = 6.710e-6
Identity = 25/39 (64.10%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    4 CMKAGCSKKAQPRSTLCRLHGGGRRCQREGCGKVDVGGG 120
            C + GC+K A   S  CR HGGG+RCQREGCGK D GGG
Sbjct:  408 CGRDGCAKHALSGSEHCRAHGGGKRCQREGCGKGDAGGG 446
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9667.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
C1MU61_MICPC6.710e-664.10Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9667contigP-wetherbeei_contig9667:11..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog38833.XP_003059142.1
Model size576
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.75e-06
EggNOG OGs28NFB@1|root,2QV0W@2759|Eukaryota,37RBB@33090|Viridiplantae
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187104.6744761-CDS-P-wetherbeei_contig9667:10..5801683187104.6744761-CDS-P-wetherbeei_contig9667:10..580Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9667 11..580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187104.685694-UTR-P-wetherbeei_contig9667:580..5861683187104.685694-UTR-P-wetherbeei_contig9667:580..586Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9667 581..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9667.1.1prot_P-wetherbeei_contig9667.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9667 11..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9667.1.1

>prot_P-wetherbeei_contig9667.1.1 ID=prot_P-wetherbeei_contig9667.1.1|Name=mRNA_P-wetherbeei_contig9667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp
MKAGCSKKAQPRSTLCRLHGGGRRCQREGCGKVDVGGGLCRSHGGGKRCM
VPSCGKTDVGGGFCMAHGGGKRCQAEGCGKGAQTGGVFCKSHGGGRRCSY
PGCKSSAQSGAQALCIKHGGGKRCSVDGCDNLVRKNGFCARHSAGNRSCG
HAASKSRSATSTAAAASSQSAAATTSASFACPAAVVERVP
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mRNA from alignment at P-wetherbeei_contig9667:11..586-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9667.1.1 ID=mRNA_P-wetherbeei_contig9667.1.1|Name=mRNA_P-wetherbeei_contig9667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig9667:11..586- (Phaeothamnion wetherbeei SAG_119_79)
GGGTGCATGAAAGCCGGGTGCTCGAAAAAGGCGCAGCCTCGGAGCACTTT
ATGTCGCCTGCACGGAGGCGGCCGGCGCTGCCAGCGCGAAGGCTGCGGTA
AGGTTGACGTCGGAGGCGGCCTATGCCGCAGCCACGGCGGTGGAAAGCGT
TGCATGGTTCCTTCGTGCGGCAAGACTGACGTTGGGGGCGGCTTCTGCAT
GGCCCACGGTGGCGGGAAGCGGTGCCAGGCCGAAGGCTGTGGGAAAGGCG
CGCAAACCGGAGGAGTCTTTTGCAAGAGTCACGGCGGCGGGCGCCGGTGC
AGCTACCCCGGTTGCAAGAGCAGCGCGCAGAGCGGCGCGCAGGCGCTGTG
CATCAAGCACGGCGGTGGCAAGCGCTGCTCCGTGGATGGCTGCGACAACC
TTGTGCGCAAGAACGGCTTTTGCGCCCGCCACTCAGCCGGCAACCGCTCT
TGTGGCCATGCAGCCTCCAAGTCCCGCTCCGCCACTTCGACCGCCGCCGC
CGCCTCCTCCCAATCTGCCGCCGCGACCACGTCTGCGTCTTTCGCCTGCC
CCGCCGCAGTTGTTGAGCGTGTCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9667:11..586-

>mRNA_P-wetherbeei_contig9667.1.1 ID=mRNA_P-wetherbeei_contig9667.1.1|Name=mRNA_P-wetherbeei_contig9667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig9667:11..586- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGCCGGGTGCTCGAAAAAGGCGCAGCCTCGGAGCACTTTATGTCG
CCTGCACGGAGGCGGCCGGCGCTGCCAGCGCGAAGGCTGCGGTAAGGTTG
ACGTCGGAGGCGGCCTATGCCGCAGCCACGGCGGTGGAAAGCGTTGCATG
GTTCCTTCGTGCGGCAAGACTGACGTTGGGGGCGGCTTCTGCATGGCCCA
CGGTGGCGGGAAGCGGTGCCAGGCCGAAGGCTGTGGGAAAGGCGCGCAAA
CCGGAGGAGTCTTTTGCAAGAGTCACGGCGGCGGGCGCCGGTGCAGCTAC
CCCGGTTGCAAGAGCAGCGCGCAGAGCGGCGCGCAGGCGCTGTGCATCAA
GCACGGCGGTGGCAAGCGCTGCTCCGTGGATGGCTGCGACAACCTTGTGC
GCAAGAACGGCTTTTGCGCCCGCCACTCAGCCGGCAACCGCTCTTGTGGC
CATGCAGCCTCCAAGTCCCGCTCCGCCACTTCGACCGCCGCCGCCGCCTC
CTCCCAATCTGCCGCCGCGACCACGTCTGCGTCTTTCGCCTGCCCCGCCG
CAGTTGTTGAGCGTGTCCCC
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