mRNA_P-wetherbeei_contig9663.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9663.1.1
Unique NamemRNA_P-wetherbeei_contig9663.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9663.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9663contigP-wetherbeei_contig9663:60..2018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1960
Hectar predicted targeting categoryother localisation
Exons1
Cds size1959
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187104.5004642-CDS-P-wetherbeei_contig9663:59..20181683187104.5004642-CDS-P-wetherbeei_contig9663:59..2018Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9663 60..2018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9663.1.1prot_P-wetherbeei_contig9663.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9663 60..2018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9663.1.1

>prot_P-wetherbeei_contig9663.1.1 ID=prot_P-wetherbeei_contig9663.1.1|Name=mRNA_P-wetherbeei_contig9663.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=653bp
HVGRRRKRGGGGGGTRAQSGSGGGTRAQSGSGEECPEAGGGASDGPLAAP
QPEKWSEMNMATKKRQMKDAGWEVSVDCWGSELDYRYWRPGSGGPTGAKE
AAKKVGLPSWAVGRRGIDFFVGRTEAEEFVRKNWNSGAWKEPVPAAVVAG
FGDGGCDVDSGMDSAPMPWKRRRFDNEACSAAALESESDGSDGSEGDGDS
SGDCNDGSDREFDDDDDNGGSEGDGEHVDGNTSDADGGGSDGNDGAASGG
DTGGKGGNGRRRKKFAGPKLSPEDLERFEKSNPEVREMLRQEYSALLKCL
SVDSFTFKELFHFLRAQKKWDYVKSGDDAWIYRTPAAIAARYPSGRGCRH
WRSGGGDVGGEVLGGGGGGNRGGGEGSGSGGGGVGGGNGGENDIEGGVSI
GTADCSDGGGSKVRDRIGSDGGAAVTSHDKIISASCGNDGGLGIARATDG
GGNRDGAAAASANAAAATATTAAATIAAAAAAKADAAAAGLAEGKIAAAL
AALRPNVDYFQREEDLLKFMREPAQRLLLFELFEYTFSSVRRGVLRGAAA
AAGFCPGAAAAAMPTPPRKKRPGGDGGDDNDVKRRRDYWLGRRSDLGNAG
GGGGDSLAFSAIDTGAQNYFDSHVSGKTAGAARGAIATAGAAAGARGSLR
GGR
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mRNA from alignment at P-wetherbeei_contig9663:60..2018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9663.1.1 ID=mRNA_P-wetherbeei_contig9663.1.1|Name=mRNA_P-wetherbeei_contig9663.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1959bp|location=Sequence derived from alignment at P-wetherbeei_contig9663:60..2018+ (Phaeothamnion wetherbeei SAG_119_79)
CATGTTGGGCGTAGGCGCAAGCGTGGTGGCGGCGGTGGCGGCACCCGTGC
GCAAAGTGGCAGCGGTGGCGGCACCCGTGCGCAAAGTGGCAGCGGCGAGG
AGTGCCCCGAAGCTGGTGGAGGCGCCTCCGACGGGCCGCTGGCAGCACCA
CAACCAGAGAAGTGGAGCGAAATGAACATGGCGACTAAGAAGAGGCAGAT
GAAGGACGCTGGCTGGGAAGTGTCGGTCGATTGCTGGGGAAGCGAGCTGG
ATTACCGTTACTGGCGACCCGGAAGCGGCGGGCCGACGGGAGCTAAGGAG
GCGGCGAAAAAAGTCGGTTTGCCGTCGTGGGCGGTGGGTCGGCGCGGGAT
CGATTTCTTCGTCGGCCGCACCGAAGCGGAGGAGTTCGTGAGAAAGAACT
GGAATAGCGGTGCGTGGAAAGAGCCGGTGCCGGCTGCAGTGGTGGCAGGC
TTCGGCGACGGTGGCTGCGACGTGGACTCCGGCATGGACTCTGCTCCTAT
GCCCTGGAAGCGGAGGCGCTTCGACAACGAGGCCTGTTCCGCCGCTGCTT
TGGAAAGCGAAAGCGACGGCAGCGACGGCAGCGAGGGCGACGGTGACAGC
AGCGGCGACTGCAATGATGGCAGCGATCGGGAATTCGACGATGATGACGA
CAACGGCGGGAGCGAAGGCGACGGTGAGCACGTTGACGGTAACACCAGCG
ATGCAGATGGCGGTGGCAGCGATGGCAACGACGGCGCCGCGAGCGGCGGG
GATACGGGCGGCAAGGGCGGCAACGGACGGCGGCGGAAGAAGTTCGCGGG
GCCGAAGCTGTCCCCGGAGGACTTGGAACGCTTCGAAAAGTCCAACCCCG
AAGTGCGAGAGATGCTGCGGCAGGAGTACTCCGCCCTGCTCAAGTGCCTG
TCAGTGGACAGCTTCACCTTCAAGGAGCTATTTCACTTCCTGCGGGCGCA
GAAGAAGTGGGACTACGTCAAGAGCGGCGACGACGCATGGATCTACCGCA
CCCCGGCGGCCATCGCGGCGCGCTACCCCAGTGGCCGCGGCTGCCGCCAC
TGGCGCAGCGGCGGCGGCGATGTCGGCGGCGAAGTCTTGGGCGGCGGCGG
CGGCGGGAACAGAGGCGGTGGCGAGGGCAGTGGCAGCGGCGGTGGTGGCG
TCGGCGGTGGCAACGGCGGAGAAAATGATATCGAGGGCGGCGTGAGCATC
GGCACAGCTGACTGCAGCGACGGCGGTGGTTCTAAGGTCCGTGACAGAAT
TGGCAGTGACGGCGGTGCCGCTGTCACGAGCCACGACAAGATTATCAGCG
CGTCTTGTGGCAATGACGGCGGCTTGGGCATTGCGAGGGCGACCGATGGA
GGTGGCAACAGGGACGGAGCCGCCGCCGCAAGTGCCAATGCAGCCGCCGC
AACCGCCACCACCGCCGCCGCCACGATTGCTGCTGCTGCCGCTGCGAAGG
CTGACGCGGCCGCGGCGGGGTTGGCCGAGGGGAAGATCGCGGCGGCGCTG
GCGGCGCTGCGACCAAACGTCGATTACTTTCAGCGGGAAGAGGACTTGCT
CAAGTTCATGCGCGAGCCGGCGCAGCGGCTGCTGCTGTTCGAGCTCTTTG
AATACACCTTCTCCAGCGTTCGGCGCGGCGTGCTGCGCGGTGCGGCCGCG
GCCGCCGGCTTTTGCCCGGGCGCGGCGGCAGCAGCGATGCCGACACCGCC
ACGGAAGAAGCGACCGGGCGGCGACGGCGGCGACGACAATGATGTGAAGC
GGCGGCGGGACTACTGGCTGGGCCGCCGCAGCGACCTCGGCAATGCCGGC
GGTGGCGGTGGCGACAGCCTGGCGTTCTCTGCGATTGACACCGGCGCCCA
AAACTACTTTGACAGCCACGTCTCCGGCAAAACGGCAGGTGCGGCCCGAG
GCGCCATTGCGACGGCCGGCGCCGCTGCAGGGGCGCGGGGATCGCTGCGT
GGCGGGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9663:60..2018+

>mRNA_P-wetherbeei_contig9663.1.1 ID=mRNA_P-wetherbeei_contig9663.1.1|Name=mRNA_P-wetherbeei_contig9663.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1959bp|location=Sequence derived from alignment at P-wetherbeei_contig9663:60..2018+ (Phaeothamnion wetherbeei SAG_119_79)
CATGTTGGGCGTAGGCGCAAGCGTGGTGGCGGCGGTGGCGGCACCCGTGC
GCAAAGTGGCAGCGGTGGCGGCACCCGTGCGCAAAGTGGCAGCGGCGAGG
AGTGCCCCGAAGCTGGTGGAGGCGCCTCCGACGGGCCGCTGGCAGCACCA
CAACCAGAGAAGTGGAGCGAAATGAACATGGCGACTAAGAAGAGGCAGAT
GAAGGACGCTGGCTGGGAAGTGTCGGTCGATTGCTGGGGAAGCGAGCTGG
ATTACCGTTACTGGCGACCCGGAAGCGGCGGGCCGACGGGAGCTAAGGAG
GCGGCGAAAAAAGTCGGTTTGCCGTCGTGGGCGGTGGGTCGGCGCGGGAT
CGATTTCTTCGTCGGCCGCACCGAAGCGGAGGAGTTCGTGAGAAAGAACT
GGAATAGCGGTGCGTGGAAAGAGCCGGTGCCGGCTGCAGTGGTGGCAGGC
TTCGGCGACGGTGGCTGCGACGTGGACTCCGGCATGGACTCTGCTCCTAT
GCCCTGGAAGCGGAGGCGCTTCGACAACGAGGCCTGTTCCGCCGCTGCTT
TGGAAAGCGAAAGCGACGGCAGCGACGGCAGCGAGGGCGACGGTGACAGC
AGCGGCGACTGCAATGATGGCAGCGATCGGGAATTCGACGATGATGACGA
CAACGGCGGGAGCGAAGGCGACGGTGAGCACGTTGACGGTAACACCAGCG
ATGCAGATGGCGGTGGCAGCGATGGCAACGACGGCGCCGCGAGCGGCGGG
GATACGGGCGGCAAGGGCGGCAACGGACGGCGGCGGAAGAAGTTCGCGGG
GCCGAAGCTGTCCCCGGAGGACTTGGAACGCTTCGAAAAGTCCAACCCCG
AAGTGCGAGAGATGCTGCGGCAGGAGTACTCCGCCCTGCTCAAGTGCCTG
TCAGTGGACAGCTTCACCTTCAAGGAGCTATTTCACTTCCTGCGGGCGCA
GAAGAAGTGGGACTACGTCAAGAGCGGCGACGACGCATGGATCTACCGCA
CCCCGGCGGCCATCGCGGCGCGCTACCCCAGTGGCCGCGGCTGCCGCCAC
TGGCGCAGCGGCGGCGGCGATGTCGGCGGCGAAGTCTTGGGCGGCGGCGG
CGGCGGGAACAGAGGCGGTGGCGAGGGCAGTGGCAGCGGCGGTGGTGGCG
TCGGCGGTGGCAACGGCGGAGAAAATGATATCGAGGGCGGCGTGAGCATC
GGCACAGCTGACTGCAGCGACGGCGGTGGTTCTAAGGTCCGTGACAGAAT
TGGCAGTGACGGCGGTGCCGCTGTCACGAGCCACGACAAGATTATCAGCG
CGTCTTGTGGCAATGACGGCGGCTTGGGCATTGCGAGGGCGACCGATGGA
GGTGGCAACAGGGACGGAGCCGCCGCCGCAAGTGCCAATGCAGCCGCCGC
AACCGCCACCACCGCCGCCGCCACGATTGCTGCTGCTGCCGCTGCGAAGG
CTGACGCGGCCGCGGCGGGGTTGGCCGAGGGGAAGATCGCGGCGGCGCTG
GCGGCGCTGCGACCAAACGTCGATTACTTTCAGCGGGAAGAGGACTTGCT
CAAGTTCATGCGCGAGCCGGCGCAGCGGCTGCTGCTGTTCGAGCTCTTTG
AATACACCTTCTCCAGCGTTCGGCGCGGCGTGCTGCGCGGTGCGGCCGCG
GCCGCCGGCTTTTGCCCGGGCGCGGCGGCAGCAGCGATGCCGACACCGCC
ACGGAAGAAGCGACCGGGCGGCGACGGCGGCGACGACAATGATGTGAAGC
GGCGGCGGGACTACTGGCTGGGCCGCCGCAGCGACCTCGGCAATGCCGGC
GGTGGCGGTGGCGACAGCCTGGCGTTCTCTGCGATTGACACCGGCGCCCA
AAACTACTTTGACAGCCACGTCTCCGGCAAAACGGCAGGTGCGGCCCGAG
GCGCCATTGCGACGGCCGGCGCCGCTGCAGGGGCGCGGGGATCGCTGCGT
GGCGGGCGC
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