mRNA_P-wetherbeei_contig9642.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9642.1.1
Unique NamemRNA_P-wetherbeei_contig9642.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Match: A0A1J4Z6A4_9PROT (3'-5' exonuclease domain-containing protein n=2 Tax=Hydrogenophilales TaxID=119069 RepID=A0A1J4Z6A4_9PROT)

HSP 1 Score: 213 bits (542), Expect = 1.080e-67
Identity = 104/152 (68.42%), Postives = 121/152 (79.61%), Query Frame = 1
Query:    1 RAVGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELLASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNLAGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGLLA 456
            R VG DTETRPAF+KGE Y PAL QVAT+R VYLFRL  +D +  L ELL +P+  K G+A+ADDLRQLK+ F FE   ++DPG IA RHG+ QTGLRNLA IFLGFRI KG++T+NWAA  LT  QIAYAATDAWACREL+LRF+ LGLLA
Sbjct:   46 RVVGIDTETRPAFRKGESYPPALVQVATARVVYLFRLHQVDCAAALAELLGAPSIVKAGVALADDLRQLKREFQFEPAAILDPGRIARRHGIRQTGLRNLAAIFLGFRITKGARTSNWAAAHLTAAQIAYAATDAWACRELYLRFQTLGLLA 197          
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Match: A0A1F3Z8L0_9PROT (3'-5' exonuclease domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_67_12 TaxID=1797483 RepID=A0A1F3Z8L0_9PROT)

HSP 1 Score: 207 bits (526), Expect = 3.000e-65
Identity = 104/151 (68.87%), Postives = 121/151 (80.13%), Query Frame = 1
Query:    1 RAVGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELLASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNLAGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGLL 453
            R VG DTETRPAF+KGER+LPAL QVAT+RAVYLF L+ +D SR + ELLA+P   KVG+++A DLRQLK LF   E  V+D G +A  +GL QTGLRNLA IFLGFRIPKG +T+NWAA RL+  QIAYAATDAWACRELFL FE LG+L
Sbjct:   46 RVVGIDTETRPAFRKGERHLPALVQVATARAVYLFPLRRLDFSRAIGELLAAPGIVKVGVSLAHDLRQLKLLFPSVEASVLDAGAVALGYGLRQTGLRNLAAIFLGFRIPKGKRTSNWAASRLSAAQIAYAATDAWACRELFLCFERLGML 196          
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Match: A0A2T4TZ34_9BACT (3'-5' exonuclease n=2 Tax=Candidatus Methylomirabilis limnetica TaxID=2033718 RepID=A0A2T4TZ34_9BACT)

HSP 1 Score: 204 bits (519), Expect = 6.140e-64
Identity = 99/149 (66.44%), Postives = 120/149 (80.54%), Query Frame = 1
Query:    7 VGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELLASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNLAGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGLL 453
            VGFD ETRPAF+ GE YLP+L Q AT+ AVYL ++Q  D S  ++E+ +S    K G++VADDLR LK+LF+FEE+ V+D G +A RHGL QTG+RNLAGIFLG RIPKG+KTTNWAA RLT QQIAYAATDAWACREL+LRF+ L L+
Sbjct:   81 VGFDIETRPAFRPGESYLPSLVQFATAGAVYLMQVQQQDYSAVMQEIFSSEKITKAGVSVADDLRNLKKLFEFEERAVVDLGKVAKRHGLKQTGVRNLAGIFLGTRIPKGAKTTNWAAHRLTPQQIAYAATDAWACRELYLRFKQLNLV 229          
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Match: A0A1F4BA73_9PROT (3'-5' exonuclease domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BA73_9PROT)

HSP 1 Score: 203 bits (516), Expect = 6.550e-64
Identity = 100/153 (65.36%), Postives = 120/153 (78.43%), Query Frame = 1
Query:    1 RAVGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELLASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNLAGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGLLAT 459
            R VG DTETRPAF+KGE +LP L Q AT+RAVYLF+L  +D    L ELLASPA  K G+ +A D+RQLK +F F  + V+D G +A R GL QTG+RNLAG+FLGFRIPKG++T+NWAA RL   QI YAATDAWACREL+LRFEALGLL++
Sbjct:   41 RVVGLDTETRPAFRKGESHLPCLVQAATARAVYLFQLSRLDVFPALVELLASPAVVKAGVGLAHDVRQLKLVFPFTVENVLDLGVVARRRGLGQTGVRNLAGMFLGFRIPKGARTSNWAAPRLAPAQITYAATDAWACRELYLRFEALGLLSS 193          
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Match: A0A1F4FA73_9PROT (3'-5' exonuclease domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FA73_9PROT)

HSP 1 Score: 202 bits (513), Expect = 2.830e-63
Identity = 98/150 (65.33%), Postives = 121/150 (80.67%), Query Frame = 1
Query:    4 AVGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELLASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNLAGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGLL 453
            A+GFDTETRPAF+KGE +LPALAQ+AT+RAVYLFRLQH D    + E+L+S    K G+ +A DLR+L++LF  +   V+D G  A R G+ QTGLRNLAG+FLGFRIPKG+KT+NWAA+RL+ QQIAYAATDAWACREL+L F  LGL+
Sbjct:   47 ALGFDTETRPAFRKGESHLPALAQLATARAVYLFRLQHQDFGGAIAEILSSQRIVKAGVGLAHDLRELRRLFASQPASVVDLGAAAKRRGVRQTGLRNLAGLFLGFRIPKGTKTSNWAARRLSPQQIAYAATDAWACRELYLEFRRLGLV 196          
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Match: A0A1F4EJC6_9PROT (3'-5' exonuclease domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EJC6_9PROT)

HSP 1 Score: 201 bits (512), Expect = 4.150e-63
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 1
Query:    7 VGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELLASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNLAGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGLLATH 462
            VGFDTETRP+F+KGE Y P LAQVATSRAVYLF+L+  D S  + ELL +P   KVGI+VA+DLRQLK LF  +   V+D G +A RHGL QTGLRNLA IFLG RIPKG++T+NWAA RL+  QI YAATDAWACRELFL +  LGLL   
Sbjct:   57 VGFDTETRPSFRKGESYPPCLAQVATSRAVYLFQLRQQDFSAAIAELLGAPGITKVGISVAEDLRQLKALFPSQVASVLDAGAVARRHGLRQTGLRNLAAIFLGIRIPKGNRTSNWAAPRLSPAQITYAATDAWACRELFLCYARLGLLGAQ 208          
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Match: A0A258TLW4_9PROT (3'-5' exonuclease domain-containing protein n=1 Tax=Hydrogenophilales bacterium 28-61-23 TaxID=1970530 RepID=A0A258TLW4_9PROT)

HSP 1 Score: 199 bits (507), Expect = 3.260e-62
Identity = 98/149 (65.77%), Postives = 115/149 (77.18%), Query Frame = 1
Query:    7 VGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELLASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNLAGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGLL 453
            VGFDTETRPAF KGE +LP L Q+AT+RAVYLF+LQ +D +  L ELLA P   KVG+A+A DLRQL+ LF      V+DPG +A RHG+ QTGLRNLAG+FLGFRI KG +T+NWAA  L+  QI YAATDAWACREL+LR   LGLL
Sbjct:   69 VGFDTETRPAFNKGEHHLPCLVQIATARAVYLFQLQRLDCAEALAELLADPGIVKVGVALAHDLRQLELLFPLAPIAVLDPGIVARRHGIKQTGLRNLAGMFLGFRIAKGMRTSNWAAPNLSAAQIGYAATDAWACRELYLRLLELGLL 217          
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Match: A0A537D9Y4_9PROT (3'-5' exonuclease domain-containing protein 2 n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537D9Y4_9PROT)

HSP 1 Score: 198 bits (503), Expect = 6.390e-62
Identity = 96/149 (64.43%), Postives = 118/149 (79.19%), Query Frame = 1
Query:    7 VGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELLASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNLAGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGLL 453
            VG DTETRP+F++GE YLP LAQVAT+RAVYLF LQ +D SREL ELL  P   K G+++A DLRQLK +F FE+  V+D GD+A   G+ Q+G+RNLA  FLGFRIPKG++T+NWAA+ L+  QI YAATDAWACREL+LRF+ L LL
Sbjct:   51 VGLDTETRPSFRRGENYLPCLAQVATARAVYLFPLQRLDCSRELAELLGDPLIVKAGVSLAHDLRQLKLVFPFEQASVVDLGDVARHGGVGQSGVRNLAANFLGFRIPKGNRTSNWAARHLSPAQITYAATDAWACRELYLRFKELQLL 199          
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Match: A0A0S8C9S8_9PROT (3'-5' exonuclease domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C9S8_9PROT)

HSP 1 Score: 197 bits (501), Expect = 1.100e-61
Identity = 97/151 (64.24%), Postives = 116/151 (76.82%), Query Frame = 1
Query:    1 RAVGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELLASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNLAGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGLL 453
            R +G DTETRP+F+KGE +LP L Q AT+RAVYLF+L  +D    L ELLA P   K G+ +A DLRQLK +F F  +  +D G +A R GL QTG+RNLAGIFLGFRIPKGS+T+NWAA RL+  QI YAATDAWACRELFLRFE+LG+L
Sbjct:   41 RVLGLDTETRPSFRKGESHLPCLVQAATARAVYLFQLSRLDVFPALVELLAKPDLIKAGVGLAHDLRQLKLVFPFTVENTVDLGVVARRRGLGQTGVRNLAGIFLGFRIPKGSRTSNWAAPRLSPAQITYAATDAWACRELFLRFESLGML 191          
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Match: A0A537BSN3_9PROT (3'-5' exonuclease domain-containing protein 2 n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BSN3_9PROT)

HSP 1 Score: 196 bits (497), Expect = 4.580e-61
Identity = 97/149 (65.10%), Postives = 117/149 (78.52%), Query Frame = 1
Query:    7 VGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELLASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNLAGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGLL 453
            VG DTETRPAF+KGE +LP L QVAT+RAVYLF LQ MD SR L ELL+ P   K G+++A DLRQLK +F FE   V+D GD A   G++Q+G+RNLA  FLGFRIPKG++T+NWAA+ L+  QI YAATDAWACREL+LRF+ LGLL
Sbjct:   47 VGLDTETRPAFRKGESHLPCLVQVATARAVYLFPLQRMDYSRPLAELLSEPLIVKAGVSLAHDLRQLKLVFPFEPACVVDLGDAARHGGVSQSGVRNLAANFLGFRIPKGNRTSNWAARHLSPAQITYAATDAWACRELYLRFKELGLL 195          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9642.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J4Z6A4_9PROT1.080e-6768.423'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A1F3Z8L0_9PROT3.000e-6568.873'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A2T4TZ34_9BACT6.140e-6466.443'-5' exonuclease n=2 Tax=Candidatus Methylomirabi... [more]
A0A1F4BA73_9PROT6.550e-6465.363'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A1F4FA73_9PROT2.830e-6365.333'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A1F4EJC6_9PROT4.150e-6366.453'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A258TLW4_9PROT3.260e-6265.773'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A537D9Y4_9PROT6.390e-6264.433'-5' exonuclease domain-containing protein 2 n=1 ... [more]
A0A0S8C9S8_9PROT1.100e-6164.243'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A537BSN3_9PROT4.580e-6165.103'-5' exonuclease domain-containing protein 2 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9642contigP-wetherbeei_contig9642:1..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog525146.Ddes_1964
PFAMsDNA_pol_A_exo1
Model size468
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.45e-43
EggNOG OGsCOG0349@1|root,COG0349@2|Bacteria,1REMB@1224|Proteobacteria,42S18@68525|delta/epsilon subdivisions,2WN9J@28221|Deltaproteobacteria,2MAMV@213115|Desulfovibrionales
Description3'-5' exonuclease
Cds size468
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187103.4251206-CDS-P-wetherbeei_contig9642:0..4681683187103.4251206-CDS-P-wetherbeei_contig9642:0..468Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9642 1..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9642.1.1prot_P-wetherbeei_contig9642.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9642 1..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9642.1.1

>prot_P-wetherbeei_contig9642.1.1 ID=prot_P-wetherbeei_contig9642.1.1|Name=mRNA_P-wetherbeei_contig9642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
RAVGFDTETRPAFQKGERYLPALAQVATSRAVYLFRLQHMDASRELRELL
ASPATAKVGIAVADDLRQLKQLFDFEEQRVIDPGDIAYRHGLTQTGLRNL
AGIFLGFRIPKGSKTTNWAAQRLTEQQIAYAATDAWACRELFLRFEALGL
LATHG*
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mRNA from alignment at P-wetherbeei_contig9642:1..468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9642.1.1 ID=mRNA_P-wetherbeei_contig9642.1.1|Name=mRNA_P-wetherbeei_contig9642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig9642:1..468+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGCGGTCGGTTTCGACACCGAGACCCGGCCGGCCTTCCAGAAGGGCGA GCGCTACCTCCCCGCGCTCGCACAGGTGGCCACTTCCCGCGCGGTCTACC TGTTTCGCCTCCAGCACATGGATGCGTCCCGCGAACTTCGCGAACTGCTG GCGTCACCCGCCACAGCAAAGGTCGGCATCGCAGTGGCCGACGACCTGCG CCAACTCAAGCAACTGTTCGACTTCGAGGAGCAGCGGGTCATCGATCCGG GTGACATCGCGTACCGGCATGGCCTGACCCAGACCGGCCTGCGCAACCTG GCGGGTATCTTCCTGGGATTCCGGATCCCCAAGGGCAGCAAGACCACGAA CTGGGCGGCGCAGCGTCTGACTGAACAGCAGATCGCCTACGCCGCCACCG ATGCCTGGGCCTGCCGGGAATTGTTCCTGCGCTTCGAGGCGCTGGGCTTG CTGGCCACGCACGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9642:1..468+

>mRNA_P-wetherbeei_contig9642.1.1 ID=mRNA_P-wetherbeei_contig9642.1.1|Name=mRNA_P-wetherbeei_contig9642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig9642:1..468+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGCGGTCGGTTTCGACACCGAGACCCGGCCGGCCTTCCAGAAGGGCGA
GCGCTACCTCCCCGCGCTCGCACAGGTGGCCACTTCCCGCGCGGTCTACC
TGTTTCGCCTCCAGCACATGGATGCGTCCCGCGAACTTCGCGAACTGCTG
GCGTCACCCGCCACAGCAAAGGTCGGCATCGCAGTGGCCGACGACCTGCG
CCAACTCAAGCAACTGTTCGACTTCGAGGAGCAGCGGGTCATCGATCCGG
GTGACATCGCGTACCGGCATGGCCTGACCCAGACCGGCCTGCGCAACCTG
GCGGGTATCTTCCTGGGATTCCGGATCCCCAAGGGCAGCAAGACCACGAA
CTGGGCGGCGCAGCGTCTGACTGAACAGCAGATCGCCTACGCCGCCACCG
ATGCCTGGGCCTGCCGGGAATTGTTCCTGCGCTTCGAGGCGCTGGGCTTG
CTGGCCACGCACGGCTGA
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