mRNA_P-wetherbeei_contig9640.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9640.1.2
Unique NamemRNA_P-wetherbeei_contig9640.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Match: A0A835YGF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGF7_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.880e-50
Identity = 84/110 (76.36%), Postives = 97/110 (88.18%), Query Frame = 1
Query:    1 VGSRSSAIDAMEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISERDYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR 330
            V   SSA  A+EKSCYFKI+FKI EDA VYEAVQRFAAYNIGALAVTD  G V GIISERDYV K+ALLG+QS++TKV+E+ATMG+NIIVAK +D++HDCM+KMLARDIR
Sbjct:   51 VNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIR 160          
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Match: D7G770_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G770_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 2.050e-45
Identity = 79/110 (71.82%), Postives = 94/110 (85.45%), Query Frame = 1
Query:    1 VGSRSSAIDAMEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISERDYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR 330
            V +RSSA DA++KSCYFKI+F I E+A VYEAVQRFAAYNIGALAVT+    V GI+SERDYVSKVALLGK SKST V+EIATMG+N+++A  +DT+ DCM KM+ARDIR
Sbjct:   51 VENRSSAKDALQKSCYFKIDFGISEEATVYEAVQRFAAYNIGALAVTNDDKKVIGIVSERDYVSKVALLGKASKSTPVKEIATMGANLVIASKSDTMQDCMAKMVARDIR 160          
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Match: A0A7R9UAT3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAT3_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.240e-39
Identity = 73/110 (66.36%), Postives = 85/110 (77.27%), Query Frame = 1
Query:    1 VGSRSSAIDAMEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISERDYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR 330
            +G  S+A +A EKSCYFKI+FKI EDA VYEAVQRFAAYNIG L V    G VAGIISERDYV+KVALLG++S   KV EI T  +N++VA  +D+V DCM  MLARDIR
Sbjct:   67 IGLSSTASNAWEKSCYFKIDFKIDEDASVYEAVQRFAAYNIGCLVVVSKEGKVAGIISERDYVTKVALLGRKSVDVKVSEICTSEANMVVANTSDSVQDCMGMMLARDIR 176          
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Match: A0A7S1XTH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTH5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.870e-39
Identity = 71/110 (64.55%), Postives = 87/110 (79.09%), Query Frame = 1
Query:    1 VGSRSSAIDAMEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISERDYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR 330
            +G  S+A  A EKSCYFKI+FKI +DA VYEAVQ+FAAYNIG L V      VAGIISERDYV+K+ALLG++S  TKV E+ T G+N++VA+ TD+V +CM KMLARDIR
Sbjct:   29 IGHSSTASTAWEKSCYFKIDFKISQDASVYEAVQKFAAYNIGCLVVMKGDE-VAGIISERDYVTKIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIR 137          
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Match: A0A4D9D580_9STRA (CBS domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D580_9STRA)

HSP 1 Score: 137 bits (346), Expect = 9.340e-39
Identity = 72/110 (65.45%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    1 VGSRSSAIDAMEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISERDYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR 330
            +G + +A  A EKSCYFKI+FKIPE+AM+YEAVQRFAAYNIGALAVTD  G V G+ISERDYV K         ST V E+ T GSNI+VAK TD++  CMKKMLA+DIR
Sbjct:   60 IGEKGTAQTAWEKSCYFKIDFKIPEEAMMYEAVQRFAAYNIGALAVTDQEGKVIGVISERDYVCK---------STTVGEVCTRGSNIVVAKTTDSIATCMKKMLAKDIR 160          
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Match: A0A7S1U998_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U998_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.260e-38
Identity = 71/110 (64.55%), Postives = 87/110 (79.09%), Query Frame = 1
Query:    1 VGSRSSAIDAMEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISERDYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR 330
            +G  S+A  A EKSCYFKI+FKI +DA VYEAVQ+FAAYNIG L V      VAGIISERDYV+K+ALLG++S  TKV E+ T G+N++VA+ TD+V +CM KMLARDIR
Sbjct:  125 IGHSSTASTAWEKSCYFKIDFKISQDASVYEAVQKFAAYNIGCLVVMKGDE-VAGIISERDYVTKIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIR 233          
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Match: A0A1Z5KQF6_FISSO (CBS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQF6_FISSO)

HSP 1 Score: 130 bits (327), Expect = 3.470e-36
Identity = 68/110 (61.82%), Postives = 83/110 (75.45%), Query Frame = 1
Query:    1 VGSRSSAIDAMEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISERDYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR 330
            V   S+A DA+E S Y +INFKI EDAMVY+AVQRFAA NIG L  TD +G + GIISERDY+ KVALLG+ SK T +REI+T G+NII AK  +TV  CM+KM+ + IR
Sbjct:   27 VADVSTADDALELSGYKEINFKIDEDAMVYDAVQRFAANNIGCLVTTDKAGNMTGIISERDYICKVALLGRTSKETPIREISTRGANIITAKGNETVETCMEKMMTKGIR 136          
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Match: A0A7S2XS19_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS19_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.850e-35
Identity = 63/104 (60.58%), Postives = 81/104 (77.88%), Query Frame = 1
Query:   19 AIDAMEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISERDYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR 330
            A DA +KSCY  I+F I EDA VY+AVQRF+AY+IGAL  TD  G++AG++SERDYV+K+ALLGK SK TK+ EI+T  +N+I A   D++  CM KML+RDIR
Sbjct:   82 ASDAFKKSCYVAIDFTIAEDATVYDAVQRFSAYDIGALVTTDTDGSIAGVVSERDYVTKIALLGKTSKDTKISEISTKSANLITASPKDSIEICMGKMLSRDIR 185          
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Match: A0A7S3V6B7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6B7_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.740e-35
Identity = 61/105 (58.10%), Postives = 85/105 (80.95%), Query Frame = 1
Query:   16 SAIDAMEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISERDYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR 330
            SA  A EKSCYF+++F IPE++ V+EA+Q+FAAY+IG L  TD  G ++G+ISERDY+SK+ALLG++SK T V+EI+T  SN++ A   D+V DCM+KML++DIR
Sbjct:   68 SAKTAWEKSCYFEMDFTIPEESHVFEAIQKFAAYDIGCLVTTDEDGKISGVISERDYISKMALLGRKSKETLVKEISTKSSNLMTATPHDSVDDCMEKMLSKDIR 172          
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Match: A0A6C0KL51_9ZZZZ (CBS domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KL51_9ZZZZ)

HSP 1 Score: 125 bits (314), Expect = 2.230e-34
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1
Query:   16 SAIDAMEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISERDYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR 330
            SAID  EKSCY+KI+FKI E+A   EAV RF A+NIG LAVTDAS  V G+ SERDY++K+A L K   +TKV++I T   NII+A+N D++  CM+KM+ +DIR
Sbjct:   18 SAIDVFEKSCYYKIDFKINEEASAKEAVLRFTAFNIGCLAVTDASNKVVGVCSERDYINKIAALSKCDTTTKVKDICTYSPNIIIARNDDSIEACMRKMMFKDIR 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9640.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YGF7_9STRA2.880e-5076.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G770_ECTSI2.050e-4571.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9UAT3_9STRA1.240e-3966.36Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XTH5_9STRA4.870e-3964.55Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D580_9STRA9.340e-3965.45CBS domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S1U998_9STRA6.260e-3864.55Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1Z5KQF6_FISSO3.470e-3661.82CBS domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A7S2XS19_9STRA1.850e-3560.58Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3V6B7_9STRA3.740e-3558.10Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6C0KL51_9ZZZZ2.230e-3458.10CBS domain-containing protein n=1 Tax=viral metage... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9640contigP-wetherbeei_contig9640:100..1131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G770
PFAMsCBS
Model size330
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009987,GO:0019725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0065007,GO:0065008
Exons3
Evalue2.75e-42
EggNOG OGsCOG0517@1|root,2QQ7J@2759|Eukaryota
Ec32 ortholog descriptionCBS domain
Ec32 orthologEc-01_010830.1
DescriptionDomain in cystathionine beta-synthase and other proteins.
Cds size300
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187103.371735-CDS-P-wetherbeei_contig9640:99..1981683187103.371735-CDS-P-wetherbeei_contig9640:99..198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9640 100..198 -
1683187103.3813732-CDS-P-wetherbeei_contig9640:471..6481683187103.3813732-CDS-P-wetherbeei_contig9640:471..648Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9640 472..648 -
1683187103.3936205-CDS-P-wetherbeei_contig9640:1077..11011683187103.3936205-CDS-P-wetherbeei_contig9640:1077..1101Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9640 1078..1101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187103.401914-UTR-P-wetherbeei_contig9640:1101..11311683187103.401914-UTR-P-wetherbeei_contig9640:1101..1131Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9640 1102..1131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9640.1.2prot_P-wetherbeei_contig9640.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9640 100..1101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9640.1.2

>prot_P-wetherbeei_contig9640.1.2 ID=prot_P-wetherbeei_contig9640.1.2|Name=mRNA_P-wetherbeei_contig9640.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
MEKSCYFKINFKIPEDAMVYEAVQRFAAYNIGALAVTDASGAVAGIISER
DYVSKVALLGKQSKSTKVREIATMGSNIIVAKNTDTVHDCMKKMLARDIR
back to top

mRNA from alignment at P-wetherbeei_contig9640:100..1131-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9640.1.2 ID=mRNA_P-wetherbeei_contig9640.1.2|Name=mRNA_P-wetherbeei_contig9640.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1032bp|location=Sequence derived from alignment at P-wetherbeei_contig9640:100..1131- (Phaeothamnion wetherbeei SAG_119_79)
GTCGGCAGCAGGAGTTCGGCCATTGATGCGATGGAGAAGAGCTGCTACTT CAAGGTGAGCACGCGGTTGCCCTGTTTGTTGTCCATCATATCTCTTTGCC GACCTGCAACATGATCAATGGGGTCCGCACATTCCTTTCTGGTTCCTAGT TTGTGCTTGACTGATGGATTGCAACTTTTGAGTCTTGAATTAACCTCGGC AAAATCTTCGGCTGCGATTCATCGGCGCTCAAACGGCGTTTGGTGTCGGC GGCAATGGTGGCAATGGCGTCAACGGTGGCGACTGCGGCGGTGGCGTGTT ACGACGGCTCGCACCCGTTGCAACGGCGTTGACGGCGGTGGCGGTGATGG TGACTGCAATCGGATGATTCACGTTCGCACACAAACAATAAAATAATCGC GAAATTATGGCCAAACCGATTTGGCGAAACAACGGACGCCCCGGAAAAAC CGGGGCGGGCGGGCGGCCGGGCGGGGAGAGCAGATCAACTTCAAGATCCC CGAGGACGCGATGGTCTACGAGGCGGTGCAGCGCTTCGCGGCGTACAACA TCGGCGCGCTGGCGGTGACGGACGCGAGCGGCGCCGTCGCCGGCATCATC AGCGAGCGGGACTACGTCAGCAAGGTGGCGCTTCTCGGCAAGCAGAGCAA GTCCACCAAGGTGACCGAGAAGAAAGGACTCTGACGAAAGGGAGGCTGTC GATTGTGCTGTTTTGCCGGTTGGTTGACAGGGTGGGGCAGCGATTGAGAG TCAGCGGTCCAAGCAAACTTGGATCTGTTCTTTTGGGGCATTCCGGCCTT TTGCCGGCATTCTTTCTTCACCCTGCCTTGGTGGAATTTTTCCAGCACTT GGCCTCGGTTCTGCTTTGTGTAGACTACCTTGAAATCGTGCTAATTGAAA GCCCTTGCGCCATTTCCGTCGGCCGCCGTTCAGGTGCGGGAGATTGCGAC AATGGGATCCAACATTATCGTGGCCAAGAATACCGACACGGTCCACGACT GCATGAAGAAGATGCTCGCCCGTGACATCAGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9640:100..1131-

>mRNA_P-wetherbeei_contig9640.1.2 ID=mRNA_P-wetherbeei_contig9640.1.2|Name=mRNA_P-wetherbeei_contig9640.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig9640:100..1131- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAAGAGCTGCTACTTCAAGATCAACTTCAAGATCCCCGAGGACGC
GATGGTCTACGAGGCGGTGCAGCGCTTCGCGGCGTACAACATCGGCGCGC
TGGCGGTGACGGACGCGAGCGGCGCCGTCGCCGGCATCATCAGCGAGCGG
GACTACGTCAGCAAGGTGGCGCTTCTCGGCAAGCAGAGCAAGTCCACCAA
GGTGCGGGAGATTGCGACAATGGGATCCAACATTATCGTGGCCAAGAATA
CCGACACGGTCCACGACTGCATGAAGAAGATGCTCGCCCGTGACATCAGG
back to top