mRNA_P-wetherbeei_contig964.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig964.2.1
Unique NamemRNA_P-wetherbeei_contig964.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig964.2.1 vs. uniprot
Match: A9V8J1_MONBE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V8J1_MONBE)

HSP 1 Score: 72.4 bits (176), Expect = 1.590e-9
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 2 
Query:  515 EILPGIEKLLRVSTAEVYVDLGHQFATGCLLIDPLIEALGPALCMVRIRRQRLDVAYSLASGSHGPPCNPTQSYWWFVCRTRDAAL----YVDDDRWSALDPFQQHLWVTDEIEAQWQLLLLRQPQLRHFDLDWDAALEQRHFELVARLAG 955
            +++P +E+ L      ++   GH    G  L+  L+  LGPA+ +VR+RR R+ VA S        P  P ++   F C   D+ L    + D   ++ L  FQ+ L  +DE+E QWQ L    P  R F L+W  ++ +   + +A   G
Sbjct:  728 DMVPFMEQQLLAKNRSIFFSSGHDMTVG--LLPALVSYLGPAVSLVRVRRDRVRVAKSFTISV---PLGP-EAQRCFFCINPDSLLNRCPWRDRQAFAQLSSFQRFLHASDEMECQWQSLRHSFPHQRTFVLNWTTSISEEEMQALAYFVG 872
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig964.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A9V8J1_MONBE1.590e-929.80Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig964contigP-wetherbeei_contig964:2614..5255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog81824.XP_001749017.1
Preferred nameCOG6
PFAMsCOG6
Model size1755
Max annot lvl33154|Opisthokonta
KEGG koko:K20293
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0007275,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0022414,GO:0030334,GO:0031090,GO:0031984,GO:0032258,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035262,GO:0040012,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0061458,GO:0061919,GO:0065007,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023,GO:2000145
Exons4
Evalue5.01e-11
EggNOG OGsKOG3758@1|root,KOG3758@2759|Eukaryota,38DBZ@33154|Opisthokonta
Descriptionintra-Golgi vesicle-mediated transport
Cds size1008
COG categoryU
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig964.2.1prot_P-wetherbeei_contig964.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig964 2768..4662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187103.2992933-UTR-P-wetherbeei_contig964:2613..27671683187103.2992933-UTR-P-wetherbeei_contig964:2613..2767Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig964 2614..2767 +
1683187103.348544-UTR-P-wetherbeei_contig964:4662..52551683187103.348544-UTR-P-wetherbeei_contig964:4662..5255Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig964 4663..5255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187103.3099585-CDS-P-wetherbeei_contig964:2767..28881683187103.3099585-CDS-P-wetherbeei_contig964:2767..2888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig964 2768..2888 +
1683187103.3193808-CDS-P-wetherbeei_contig964:3345..35751683187103.3193808-CDS-P-wetherbeei_contig964:3345..3575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig964 3346..3575 +
1683187103.329083-CDS-P-wetherbeei_contig964:3766..40501683187103.329083-CDS-P-wetherbeei_contig964:3766..4050Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig964 3767..4050 +
1683187103.3403366-CDS-P-wetherbeei_contig964:4289..46621683187103.3403366-CDS-P-wetherbeei_contig964:4289..4662Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig964 4290..4662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig964.2.1

>prot_P-wetherbeei_contig964.2.1 ID=prot_P-wetherbeei_contig964.2.1|Name=mRNA_P-wetherbeei_contig964.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=336bp
MNRRRTRALAATLAAAAGVVQAGGDGNPPCSVILAWTHGHEGTTALARAD
KYECPSRRVEVRMQGQLRNRTRSTVVHKFEKNFKIPLLAHSNPACHNDTS
RMRAGSRDAWMNQSAYEIHSEILPGIEKLLRVSTAEVYVDLGHQFATGCL
LIDPLIEALGPALCMVRIRRQRLDVAYSLASGSHGPPCNPTQSYWWFVCR
TRDAALYVDDDRWSALDPFQQHLWVTDEIEAQWQLLLLRQPQLRHFDLDW
DAALEQRHFELVARLAGCAVRADADFSPTKRHVHGDAAERNASELRLRDA
AYRETVEYSAEQQRLAAPRQWWSLSAAAAAGRDLE*
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mRNA from alignment at P-wetherbeei_contig964:2614..5255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig964.2.1 ID=mRNA_P-wetherbeei_contig964.2.1|Name=mRNA_P-wetherbeei_contig964.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2642bp|location=Sequence derived from alignment at P-wetherbeei_contig964:2614..5255+ (Phaeothamnion wetherbeei SAG_119_79)
TACAAGAACCCCACTGTTCCTTTCTCCCTTCCACAAGGTGGCACATCCGC
CGACAGAAGTAAAGAGGCTTCATGGCGCGCCGACCGAGTAAGCTTTGTCC
CAAAGCGGATTAAAACGGTCAGAACGCCAAATACGTTAATCACTGGACGC
ACATATGAACAGAAGACGAACCAGAGCGCTGGCCGCGACGCTTGCCGCGG
CGGCTGGAGTAGTTCAAGCAGGTGGCGACGGAAATCCACCCTGTAGTGTG
ATCTTGGCATGGACTCACGGCCATGGTGAGTAACACCACAGCTTTCTCTC
TAGATCTTTGAAAAAGTGTGTTTCCTTCCGTGCTCCACCCTCTTTAAAAT
CTATAACAGAGCCTGGCAAGAGCGGTTTCATGAAAGGGGCAAAGAATTGT
GCGCCGAGCACTCTCATCGTCTACGCGTGTCGTCCTCTCTTATTTCATGA
AGACAGTCCTTCTTCTGTTCTAACCCTCCGTAGTCAACACAGTTTGGGCT
TTCTAAGCTACGCCTCCCTTGGGCTGTGCTGGAGCTGTGATCTGATATGC
CTTACTCTGAGTTTGCTTGAAGGAGGCAAGCTTCGCCAGTGTGAACGAGC
GGCCTCTTTCTTCCTAGCCACAGAAGAAAGCAAAGTCAAACTTTTCCATT
CCTTCCAAAACGATACATCCGTCCTTACAAAACGAGATACTGGTGTAACC
ATGAGAATGTCCATCCCACGCAAGAACGACAGAGGGTACCACGGCGCTGG
CGAGGGCAGACAAGTACGAGTGCCCGAGCCGACGCGTCGAGGTTAGAATG
CAAGGCCAGCTCCGAAACCGGACGCGGAGCACGGTGGTGCACAAGTTCGA
AAAGAACTTCAAGATCCCGCTCCTGGCGCACTCCAATCCGGCCTGCCACA
ACGACACCTCGAGGATGCGGGCCGGGAGCCGGGACGCCTGGATGAACCAA
AGCGCATATGAGGTGTGTCTCTTTGCCACTTTTCAGGCTCGGTGTATGTT
CGCCTTGATTTTCTAGCGCGTGATTTTCTGAAACATTCGCTCTGTGAAAG
AGCGTGATCGGATGGACAGAACCCGTTCCTTTCTTTTAAACAGTAGGCCA
AACGAATGAACAGCCGCCATTGCCACGAATGCCAAAAAACCGAGACACAA
CAGATACACAGTGAGATCCTGCCGGGCATCGAAAAGCTGCTGCGGGTGAG
CACCGCCGAGGTCTACGTCGACCTCGGCCACCAGTTCGCCACCGGCTGCC
TCCTGATCGACCCGCTGATCGAAGCCCTCGGCCCCGCGCTGTGCATGGTG
CGGATCCGGCGGCAGCGGCTCGACGTGGCCTACAGTCTAGCCAGCGGCAG
CCACGGCCCGCCGTGCAACCCGACGCAGAGCTACTGGTGGTTCGTGTGCC
GGACGCGCGACGCCGCGCTGTACGTAGACGACGACAGGTATACGGGCAGT
ATGCAGGGAACGGGGACGCAAGGCTTGGATGCCTTCGGCGTGGGAATCAT
TGCTAAAGTTTGCATTGGGTAGGATGCTTCGGCGTCGTGCGATTCCCTCC
GTCTTTCTGTCGTTTCGCCACTTCGGCCTTGCCTAGGGAGCGCATACACA
AGGTAAAACTTGCAGCTTATGGCTTCAGATTTGCCTCTTGGTGCCGCTTT
CACCACCTTTCCAAATCTTTTCTCAGATGGAGCGCGCTGGATCCGTTCCA
GCAGCACCTGTGGGTGACCGACGAAATCGAGGCGCAGTGGCAACTCCTCC
TGCTGCGGCAACCCCAGCTGCGGCACTTCGACCTCGATTGGGATGCCGCG
CTGGAGCAGCGCCATTTCGAGCTGGTGGCAAGGCTGGCGGGCTGCGCCGT
GCGCGCCGACGCCGACTTCTCCCCGACGAAGCGCCACGTCCACGGCGACG
CCGCAGAGCGCAACGCCTCGGAGCTGCGGCTGCGCGACGCAGCGTACCGC
GAGACTGTCGAGTACTCGGCGGAGCAGCAGCGGCTGGCGGCGCCGCGGCA
GTGGTGGAGCCTGTCAGCAGCGGCGGCGGCGGGAAGGGATTTAGAATAGA
AGAGGAGGCGCCAGCGAGGAGAGGTCGGAGTCTCGCTGCTGTCACAAGCG
CACCAGCGGCGGAAGCAGATTGGCCCTCTTCGCCGGCTGTAGCGATTGTG
GTGCGACAGTGGTCGGAATGGTTGGCATGCGGCGGGAAGCCTCGCTCTTC
TTTGCAAAGAGAGAACTTTCTTGGAAGCTACCTGTCGCATTTATTTTGAA
TTTATGGAGTAGTCAAAACTAGAGCAAGAAGCACCCGAGAGGACTTCTGC
AATTCAGAGCAATGCATTGCATCAAAGATTTATCCGTTAAAAGACGTGGT
CAACGAGGACCTGTTTTGTTTTCTCTGTGTTCGCCTTCGCCGCCTCCGAT
GCCAATCCACCGCGCCTTCGAAAGCGGCGTCTCATCACTGGGACAGCTGG
CGGAGAAAGGACCGCTGGAACGCCAAATGCAAACACAATTTAGGGCAAGA
GATGTGAATTTTTAAACAGTCAGGCAACGGGAAGCCTCTTCGTCTCTCTT
AGCTACGCCCGAGTGAAGTTGAAAATGGCACAACAGCCCGTCCCGCTGTA
GCATGCCGCCTCGTGCCCATGTTCTCAAGCAGTGCAAACGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig964:2614..5255+

>mRNA_P-wetherbeei_contig964.2.1 ID=mRNA_P-wetherbeei_contig964.2.1|Name=mRNA_P-wetherbeei_contig964.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1008bp|location=Sequence derived from alignment at P-wetherbeei_contig964:2614..5255+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAGAAGACGAACCAGAGCGCTGGCCGCGACGCTTGCCGCGGCGGC
TGGAGTAGTTCAAGCAGGTGGCGACGGAAATCCACCCTGTAGTGTGATCT
TGGCATGGACTCACGGCCATGAGGGTACCACGGCGCTGGCGAGGGCAGAC
AAGTACGAGTGCCCGAGCCGACGCGTCGAGGTTAGAATGCAAGGCCAGCT
CCGAAACCGGACGCGGAGCACGGTGGTGCACAAGTTCGAAAAGAACTTCA
AGATCCCGCTCCTGGCGCACTCCAATCCGGCCTGCCACAACGACACCTCG
AGGATGCGGGCCGGGAGCCGGGACGCCTGGATGAACCAAAGCGCATATGA
GATACACAGTGAGATCCTGCCGGGCATCGAAAAGCTGCTGCGGGTGAGCA
CCGCCGAGGTCTACGTCGACCTCGGCCACCAGTTCGCCACCGGCTGCCTC
CTGATCGACCCGCTGATCGAAGCCCTCGGCCCCGCGCTGTGCATGGTGCG
GATCCGGCGGCAGCGGCTCGACGTGGCCTACAGTCTAGCCAGCGGCAGCC
ACGGCCCGCCGTGCAACCCGACGCAGAGCTACTGGTGGTTCGTGTGCCGG
ACGCGCGACGCCGCGCTGTACGTAGACGACGACAGATGGAGCGCGCTGGA
TCCGTTCCAGCAGCACCTGTGGGTGACCGACGAAATCGAGGCGCAGTGGC
AACTCCTCCTGCTGCGGCAACCCCAGCTGCGGCACTTCGACCTCGATTGG
GATGCCGCGCTGGAGCAGCGCCATTTCGAGCTGGTGGCAAGGCTGGCGGG
CTGCGCCGTGCGCGCCGACGCCGACTTCTCCCCGACGAAGCGCCACGTCC
ACGGCGACGCCGCAGAGCGCAACGCCTCGGAGCTGCGGCTGCGCGACGCA
GCGTACCGCGAGACTGTCGAGTACTCGGCGGAGCAGCAGCGGCTGGCGGC
GCCGCGGCAGTGGTGGAGCCTGTCAGCAGCGGCGGCGGCGGGAAGGGATT
TAGAATAG
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