mRNA_P-wetherbeei_contig9639.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9639.2.1
Unique NamemRNA_P-wetherbeei_contig9639.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9639.2.1 vs. uniprot
Match: A0A127F274_9HYPH (DUF6460 domain-containing protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F274_9HYPH)

HSP 1 Score: 59.7 bits (143), Expect = 1.340e-10
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 MLHPFIRMMVKVAVASLIVGSILAHFGITVDQLIREFGLTPERI 132
            M HP IR +VK+AVASLIVG++L HFGIT + LI+EFG + E+I
Sbjct:    1 MFHPLIRSLVKIAVASLIVGTVLTHFGITPEMLIKEFGFSYEKI 44
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BLAST of mRNA_P-wetherbeei_contig9639.2.1 vs. uniprot
Match: A0A327KLA6_9HYPH (DUF6460 domain-containing protein n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327KLA6_9HYPH)

HSP 1 Score: 53.5 bits (127), Expect = 3.130e-8
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   28 VKVAVASLIVGSILAHFGITVDQLIREFGLTPERI 132
            VK+AVASLIVG++LAHFGIT+D L +E G++PER+
Sbjct:    6 VKIAVASLIVGTVLAHFGITLDALTKELGVSPERL 40
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BLAST of mRNA_P-wetherbeei_contig9639.2.1 vs. uniprot
Match: A0A327K3P0_9HYPH (DUF6460 domain-containing protein n=2 Tax=Rhodoplanes elegans TaxID=29408 RepID=A0A327K3P0_9HYPH)

HSP 1 Score: 52.4 bits (124), Expect = 8.950e-8
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   31 KVAVASLIVGSILAHFGITVDQLIREFGLTPERI 132
            K+AVASLIVG++LAHFGIT+D L+ E G++PER+
Sbjct:    7 KIAVASLIVGTVLAHFGITLDALVGELGVSPERL 40
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BLAST of mRNA_P-wetherbeei_contig9639.2.1 vs. uniprot
Match: A0A327K3Q4_9HYPH (Uncharacterized protein n=2 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327K3Q4_9HYPH)

HSP 1 Score: 51.2 bits (121), Expect = 2.560e-7
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   28 VKVAVASLIVGSILAHFGITVDQLIREFGLTPERI 132
            VK+AVASLIVG+ILAHFGIT++ L  E G++PER+
Sbjct:    6 VKIAVASLIVGTILAHFGITLETLAGELGISPERL 40
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BLAST of mRNA_P-wetherbeei_contig9639.2.1 vs. uniprot
Match: UPI00185F1FC3 (Uncharacterized protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI00185F1FC3)

HSP 1 Score: 49.3 bits (116), Expect = 1.570e-6
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   28 VKVAVASLIVGSILAHFGITVDQLIREFGLTPERI 132
            VK+AVASLIVG++LAHFGIT + +  E G++PER+
Sbjct:    9 VKIAVASLIVGTVLAHFGITFEAMSTELGISPERL 43
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BLAST of mRNA_P-wetherbeei_contig9639.2.1 vs. uniprot
Match: A0A833GEN3_9HYPH (DUF6460 domain-containing protein n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GEN3_9HYPH)

HSP 1 Score: 47.8 bits (112), Expect = 4.440e-6
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   55 VGSILAHFGITVDQLIREFGLTPERI 132
            VG+ILAHFGIT + LIREFG+TPER+
Sbjct:    2 VGTILAHFGITAEHLIREFGMTPERV 27
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BLAST of mRNA_P-wetherbeei_contig9639.2.1 vs. uniprot
Match: J6IYR2_9RHOB (DUF6460 domain-containing protein n=1 Tax=Rhodovulum sp. PH10 TaxID=1187851 RepID=J6IYR2_9RHOB)

HSP 1 Score: 45.1 bits (105), Expect = 6.710e-5
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   31 KVAVASLIVGSILAHFGITVDQLIREFGLTPERI 132
            KVAVASLIVG+I  HFGIT++ L  E GL+ ER+
Sbjct:    6 KVAVASLIVGTIFGHFGITLETLANELGLSFERV 39
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9639.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A127F274_9HYPH1.340e-1063.64DUF6460 domain-containing protein n=1 Tax=Rhodopla... [more]
A0A327KLA6_9HYPH3.130e-868.57DUF6460 domain-containing protein n=1 Tax=Rhodopla... [more]
A0A327K3P0_9HYPH8.950e-867.65DUF6460 domain-containing protein n=2 Tax=Rhodopla... [more]
A0A327K3Q4_9HYPH2.560e-768.57Uncharacterized protein n=2 Tax=Rhodoplanes piscin... [more]
UPI00185F1FC31.570e-662.86Uncharacterized protein n=1 Tax=Rhodoplanes sp. Ta... [more]
A0A833GEN3_9HYPH4.440e-676.92DUF6460 domain-containing protein n=1 Tax=Pseudorh... [more]
J6IYR2_9RHOB6.710e-564.71DUF6460 domain-containing protein n=1 Tax=Rhodovul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9639contigP-wetherbeei_contig9639:2372..2503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1187851.A33M_0380
Model size132
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.1e-05
EggNOG OGs2E8GA@1|root,339WI@2|Bacteria,1NJTR@1224|Proteobacteria,2UM3X@28211|Alphaproteobacteria
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187103.197452-CDS-P-wetherbeei_contig9639:2371..25031683187103.197452-CDS-P-wetherbeei_contig9639:2371..2503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9639 2372..2503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9639.2.1prot_P-wetherbeei_contig9639.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9639 2372..2503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9639.2.1

>prot_P-wetherbeei_contig9639.2.1 ID=prot_P-wetherbeei_contig9639.2.1|Name=mRNA_P-wetherbeei_contig9639.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
MLHPFIRMMVKVAVASLIVGSILAHFGITVDQLIREFGLTPERI
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mRNA from alignment at P-wetherbeei_contig9639:2372..2503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9639.2.1 ID=mRNA_P-wetherbeei_contig9639.2.1|Name=mRNA_P-wetherbeei_contig9639.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig9639:2372..2503+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCATCCCTTTATCCGAATGATGGTGAAGGTCGCGGTCGCCTCGCT
GATCGTTGGATCGATCCTCGCCCATTTCGGCATTACGGTGGACCAGTTGA
TCCGCGAGTTCGGGCTCACCCCGGAACGGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9639:2372..2503+

>mRNA_P-wetherbeei_contig9639.2.1 ID=mRNA_P-wetherbeei_contig9639.2.1|Name=mRNA_P-wetherbeei_contig9639.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig9639:2372..2503+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCATCCCTTTATCCGAATGATGGTGAAGGTCGCGGTCGCCTCGCT
GATCGTTGGATCGATCCTCGCCCATTTCGGCATTACGGTGGACCAGTTGA
TCCGCGAGTTCGGGCTCACCCCGGAACGGATC
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