mRNA_P-wetherbeei_contig9634.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9634.2.1
Unique NamemRNA_P-wetherbeei_contig9634.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Match: A0A4D9D0F3_9STRA (Thioredoxin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0F3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.780e-9
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 QAMDLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFLVWRPETYVVLD 162
            + MDLY+++P DLTE +  G  LSI AG FMV LF +EL  F+  R ET VVLD
Sbjct:    9 RGMDLYRRVPADLTETSTLGGLLSIVAGVFMVALFIVELISFMSHRTETMVVLD 62
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BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Match: UPI001924C19E (protein disulfide-isomerase 5-3-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI001924C19E)

HSP 1 Score: 56.6 bits (135), Expect = 7.610e-8
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 QAMDLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFLVWRPETYVVLDDVREGK 180
            +++D Y+KIP+DLTEA+  GA+LSI A   MVLLF +EL  +L     T +++D+  +G+
Sbjct:    8 KSVDFYRKIPRDLTEASVLGAWLSIVAAVSMVLLFGMELNNYLTVSTSTSIIVDNSSDGE 67
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BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Match: A0A8C4CY22_9TELE (Endoplasmic reticulum-Golgi intermediate compartment protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4CY22_9TELE)

HSP 1 Score: 52.8 bits (125), Expect = 9.680e-8
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 QAMDLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFL 129
            + +D+Y+K+PKDLT+ T  GAF+SIC   FM+ LF  EL GF+
Sbjct:    8 RGLDIYRKVPKDLTQPTYTGAFISICCCVFMLFLFLSELTGFI 50
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BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Match: UPI0018F5BE0A (endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X2 n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F5BE0A)

HSP 1 Score: 55.5 bits (132), Expect = 1.810e-7
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 QAMDLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFLVWRPETYVVLDD 165
            Q +D+Y+K+P+DLT+ T  GAF+SIC   FM+ LF  EL GF+       + +DD
Sbjct:   31 QRLDIYRKVPRDLTQPTYTGAFISICCCVFMLFLFLSELTGFITTEIVNELYVDD 85
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BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Match: A0A5A9NGI1_9TELE (Endoplasmic reticulum-Golgi intermediate compartment protein n=7 Tax=Clupeocephala TaxID=186625 RepID=A0A5A9NGI1_9TELE)

HSP 1 Score: 54.7 bits (130), Expect = 3.280e-7
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    7 MDLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFLVWRPETYVVLDD 165
            +D+Y+K+PKDLT+ T  GAF+SIC   FM+ LF  EL GF+       + +DD
Sbjct:   13 LDIYRKVPKDLTQPTYTGAFISICCCIFMMFLFLSELTGFITTEIVNELYVDD 65
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BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Match: A0A3B3S447_9TELE (Endoplasmic reticulum-Golgi intermediate compartment protein n=11 Tax=Actinopterygii TaxID=7898 RepID=A0A3B3S447_9TELE)

HSP 1 Score: 54.7 bits (130), Expect = 3.460e-7
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    7 MDLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFLVWRPETYVVLDD 165
            +D+Y+K+PKDLT+ T  GAF+SIC   FM+ LF  EL GF+       + +DD
Sbjct:   41 LDIYRKVPKDLTQPTYTGAFISICCCLFMLFLFLSELTGFIATEIVNELYVDD 93
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BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Match: D8LK23_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK23_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.690e-7
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    7 MDLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFLVWRPETYVVLDDVREGK 180
            +DLY KIP DL+++T  G + S   G  M+LLF +EL+ F+    E+ VV+D+V E K
Sbjct:  411 LDLYPKIPTDLSQSTAVGGWFSTLTGVIMLLLFQVELFSFMSAPIESQVVVDNVLETK 468
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BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Match: W5N2D2_LEPOC (Endoplasmic reticulum-Golgi intermediate compartment protein n=32 Tax=Euteleostomi TaxID=117571 RepID=W5N2D2_LEPOC)

HSP 1 Score: 54.3 bits (129), Expect = 4.450e-7
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   10 DLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFLVWRPETYVVLDD 165
            D+Y+K+PKDLT+ T  GAF+SIC   FM+ LF  EL GF+       + +DD
Sbjct:    9 DIYRKVPKDLTQPTYTGAFISICCCVFMLFLFLSELTGFIATEIVNELYVDD 60
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BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Match: ERGI1_DANRE (Endoplasmic reticulum-Golgi intermediate compartment protein 1 n=147 Tax=Osteoglossocephalai TaxID=1489341 RepID=ERGI1_DANRE)

HSP 1 Score: 54.3 bits (129), Expect = 4.450e-7
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   10 DLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFLVWRPETYVVLDD 165
            D+Y+K+PKDLT+ T  GAF+SIC   FM+ LF  EL GF+       + +DD
Sbjct:    9 DIYRKVPKDLTQPTYTGAFISICCCVFMLFLFLSELTGFIATEIVNELYVDD 60
[Close]
BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Match: A0A4W4EZH0_ELEEL (Endoplasmic reticulum-Golgi intermediate compartment protein n=5 Tax=Characiphysae TaxID=186628 RepID=A0A4W4EZH0_ELEEL)

HSP 1 Score: 54.3 bits (129), Expect = 4.640e-7
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   10 DLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFLVWRPETYVVLDD 165
            D+Y+K+PKDLT+ T  GAF+SIC   FM+ LF  EL GF+       + +DD
Sbjct:   27 DIYRKVPKDLTQPTYTGAFISICCCVFMLFLFLSELTGFIATEIVNELYVDD 78
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9634.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9D0F3_9STRA1.780e-955.56Thioredoxin domain-containing protein n=2 Tax=Mono... [more]
UPI001924C19E7.610e-845.00protein disulfide-isomerase 5-3-like n=1 Tax=Hibis... [more]
A0A8C4CY22_9TELE9.680e-853.49Endoplasmic reticulum-Golgi intermediate compartme... [more]
UPI0018F5BE0A1.810e-745.45endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A5A9NGI1_9TELE3.280e-747.17Endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A3B3S447_9TELE3.460e-747.17Endoplasmic reticulum-Golgi intermediate compartme... [more]
D8LK23_ECTSI3.690e-744.83DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
W5N2D2_LEPOC4.450e-748.08Endoplasmic reticulum-Golgi intermediate compartme... [more]
ERGI1_DANRE4.450e-748.08Endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A4W4EZH0_ELEEL4.640e-748.08Endoplasmic reticulum-Golgi intermediate compartme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9634contigP-wetherbeei_contig9634:2029..2208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4006.Lus10043062
Preferred namePDIL5-4
PFAMsCOPIIcoated_ERV,ERGIC_N,Thioredoxin
Model size180
Max annot lvl35493|Streptophyta
KEGG koko:K20365,ko:K20367
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003756,GO:0003824,GO:0016853,GO:0016860,GO:0016864,GO:0140096
Exons1
Evalue8.4e-09
EggNOG OGsCOG0445@1|root,KOG2667@2759|Eukaryota,37JCQ@33090|Viridiplantae,3GA4J@35493|Streptophyta,4JGYD@91835|fabids
Descriptiondisulfide-isomerase
Cds size174
COG categoryU
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187102.9887207-UTR-P-wetherbeei_contig9634:2028..20341683187102.9887207-UTR-P-wetherbeei_contig9634:2028..2034Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9634 2029..2034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187103.0020335-CDS-P-wetherbeei_contig9634:2034..22081683187103.0020335-CDS-P-wetherbeei_contig9634:2034..2208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9634 2035..2208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9634.2.1prot_P-wetherbeei_contig9634.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9634 2035..2208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9634.2.1

>prot_P-wetherbeei_contig9634.2.1 ID=prot_P-wetherbeei_contig9634.2.1|Name=mRNA_P-wetherbeei_contig9634.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MDLYQKIPKDLTEATEGGAFLSICAGAFMVLLFHIELYGFLVWRPETYVV
LDDVREGK
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mRNA from alignment at P-wetherbeei_contig9634:2029..2208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9634.2.1 ID=mRNA_P-wetherbeei_contig9634.2.1|Name=mRNA_P-wetherbeei_contig9634.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig9634:2029..2208+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGCGATGGATCTGTATCAAAAGATACCGAAAGACCTCACAGAGGCCAC
AGAAGGGGGCGCCTTCCTCAGCATCTGCGCGGGCGCCTTCATGGTCCTCC
TCTTCCACATCGAGCTCTACGGGTTCTTGGTGTGGCGGCCGGAGACGTAC
GTCGTATTAGACGATGTCAGGGAAGGGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9634:2029..2208+

>mRNA_P-wetherbeei_contig9634.2.1 ID=mRNA_P-wetherbeei_contig9634.2.1|Name=mRNA_P-wetherbeei_contig9634.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig9634:2029..2208+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCTGTATCAAAAGATACCGAAAGACCTCACAGAGGCCACAGAAGG
GGGCGCCTTCCTCAGCATCTGCGCGGGCGCCTTCATGGTCCTCCTCTTCC
ACATCGAGCTCTACGGGTTCTTGGTGTGGCGGCCGGAGACGTACGTCGTA
TTAGACGATGTCAGGGAAGGGAAG
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