mRNA_P-wetherbeei_contig9634.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9634.1.1
Unique NamemRNA_P-wetherbeei_contig9634.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9634.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9634contigP-wetherbeei_contig9634:191..1633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1342
Hectar predicted targeting categoryother localisation
Exons2
Cds size1065
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187102.9256678-UTR-P-wetherbeei_contig9634:190..4141683187102.9256678-UTR-P-wetherbeei_contig9634:190..414Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9634 191..414 -
1683187102.9581995-UTR-P-wetherbeei_contig9634:1580..16331683187102.9581995-UTR-P-wetherbeei_contig9634:1580..1633Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9634 1581..1633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187102.934617-CDS-P-wetherbeei_contig9634:414..13831683187102.934617-CDS-P-wetherbeei_contig9634:414..1383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9634 415..1383 -
1683187102.9450548-CDS-P-wetherbeei_contig9634:1484..15801683187102.9450548-CDS-P-wetherbeei_contig9634:1484..1580Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9634 1485..1580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9634.1.1prot_P-wetherbeei_contig9634.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9634 415..1580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9634.1.1

>prot_P-wetherbeei_contig9634.1.1 ID=prot_P-wetherbeei_contig9634.1.1|Name=mRNA_P-wetherbeei_contig9634.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=355bp
MSASSLARFVLDSSPGFGEGALVGHERGMALIELSHGEALDAVATTLLLA
PSRSARAKEMTAWLDAAAFTALSEHGMDAQDSANSKTELLLSLEHLTALI
GVVCNSAELHTLCSRGLPIILRGIGPRNPPHIRGAALGACAAFGSRLSSA
GTAATASSAAAAAGGDGDDAERICRKLVVAALPRIVPAALDCLVPAVVAV
PATSGNQNAGTAATLSRAAVAAGLAIASLETMAALLSALQSSLRPFLAKI
EAAAAPLLASADADVREAAAATVALLPHCGDGGGGSWTAAVTRLALEAHG
CASCSVTFFPVCRLSLGKFCLRGLLWTYLVLKRALLASRGVFVPAHNGCF
NRGR*
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mRNA from alignment at P-wetherbeei_contig9634:191..1633-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9634.1.1 ID=mRNA_P-wetherbeei_contig9634.1.1|Name=mRNA_P-wetherbeei_contig9634.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1443bp|location=Sequence derived from alignment at P-wetherbeei_contig9634:191..1633- (Phaeothamnion wetherbeei SAG_119_79)
CGACTAAAGCTCCCGACTCAAGTGACCCTAGGCAGCGGCTTCGACTCCCA
ACCATGTCCGCGTCATCGCTGGCGCGATTCGTGCTCGATTCCTCGCCCGG
TTTTGGCGAGGGAGCGCTCGTTGGTCACGAGCGAGGGATGGCTTTGATCG
TAAGTTCACATCTTTCACTCTGCGCGTCAATATCGTAGTAAAGAATCATA
CAAAGTTGCAATGCATCGTGGTCCTCCCTTTTTCATCCTCCAACCCGTAG
GAACTAAGCCACGGTGAGGCTTTGGACGCCGTGGCCACCACTCTCCTCTT
GGCGCCCTCTCGCTCGGCGCGAGCAAAAGAGATGACGGCGTGGCTCGACG
CTGCTGCTTTTACGGCTTTGTCCGAACACGGCATGGATGCCCAGGACTCG
GCCAATTCAAAAACCGAATTGCTGCTGAGCCTGGAGCACCTGACCGCGTT
GATTGGCGTTGTCTGCAACTCCGCAGAGCTCCACACGTTGTGCAGCAGGG
GCCTCCCGATCATACTGCGCGGCATCGGGCCGAGAAACCCGCCACACATT
CGTGGCGCCGCCCTGGGCGCCTGTGCCGCTTTCGGCAGCCGCCTGAGCAG
CGCTGGAACGGCCGCCACGGCGTCCTCCGCCGCAGCCGCTGCCGGCGGCG
ACGGGGACGACGCCGAACGCATTTGCCGCAAGCTCGTTGTCGCCGCTCTC
CCGCGGATCGTCCCCGCGGCGCTGGACTGCCTCGTACCAGCCGTAGTCGC
CGTCCCTGCCACCTCCGGCAACCAAAACGCCGGAACGGCGGCGACTCTGT
CCCGTGCCGCCGTCGCGGCCGGACTGGCGATAGCCTCGCTGGAGACGATG
GCGGCGCTGCTCTCGGCGCTGCAGAGCTCACTCCGGCCTTTCCTCGCGAA
GATCGAGGCAGCGGCGGCACCGCTGCTGGCGAGCGCCGACGCCGACGTGC
GCGAGGCTGCGGCCGCCACTGTAGCGTTGCTGCCACATTGCGGCGACGGT
GGCGGCGGGTCATGGACGGCGGCGGTCACTCGGCTCGCTCTGGAAGCTCA
CGGGTGCGCCTCCTGTTCTGTCACTTTTTTCCCCGTCTGCCGGCTTTCTT
TGGGGAAGTTTTGTCTGCGCGGCTTGTTATGGACTTACCTGGTGTTGAAA
CGCGCGTTGTTAGCTTCTCGTGGGGTCTTTGTCCCTGCTCACAATGGCTG
CTTTAATCGTGGCCGCTGATAATAGAGCGAGGTGTGTGATTCTTAAAATT
CTTTGTTCACTCTTTGAAGGCGGCTAGAGGTGAAGGCAGCCTACAGCCTG
CGGTTCTTGTCGCACTTCATTTGCACGCGTTCAGGTTTTACCTTCTGGCT
GCCTTCTGATGTTACTAGCTTTCTCATTGCCGCAGTCACCATCGCTTCCG
CCCAAAACCTTCTCTCGACCACCGCTACCGTCGCCACTCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9634:191..1633-

>mRNA_P-wetherbeei_contig9634.1.1 ID=mRNA_P-wetherbeei_contig9634.1.1|Name=mRNA_P-wetherbeei_contig9634.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1065bp|location=Sequence derived from alignment at P-wetherbeei_contig9634:191..1633- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGCGTCATCGCTGGCGCGATTCGTGCTCGATTCCTCGCCCGGTTT
TGGCGAGGGAGCGCTCGTTGGTCACGAGCGAGGGATGGCTTTGATCGAAC
TAAGCCACGGTGAGGCTTTGGACGCCGTGGCCACCACTCTCCTCTTGGCG
CCCTCTCGCTCGGCGCGAGCAAAAGAGATGACGGCGTGGCTCGACGCTGC
TGCTTTTACGGCTTTGTCCGAACACGGCATGGATGCCCAGGACTCGGCCA
ATTCAAAAACCGAATTGCTGCTGAGCCTGGAGCACCTGACCGCGTTGATT
GGCGTTGTCTGCAACTCCGCAGAGCTCCACACGTTGTGCAGCAGGGGCCT
CCCGATCATACTGCGCGGCATCGGGCCGAGAAACCCGCCACACATTCGTG
GCGCCGCCCTGGGCGCCTGTGCCGCTTTCGGCAGCCGCCTGAGCAGCGCT
GGAACGGCCGCCACGGCGTCCTCCGCCGCAGCCGCTGCCGGCGGCGACGG
GGACGACGCCGAACGCATTTGCCGCAAGCTCGTTGTCGCCGCTCTCCCGC
GGATCGTCCCCGCGGCGCTGGACTGCCTCGTACCAGCCGTAGTCGCCGTC
CCTGCCACCTCCGGCAACCAAAACGCCGGAACGGCGGCGACTCTGTCCCG
TGCCGCCGTCGCGGCCGGACTGGCGATAGCCTCGCTGGAGACGATGGCGG
CGCTGCTCTCGGCGCTGCAGAGCTCACTCCGGCCTTTCCTCGCGAAGATC
GAGGCAGCGGCGGCACCGCTGCTGGCGAGCGCCGACGCCGACGTGCGCGA
GGCTGCGGCCGCCACTGTAGCGTTGCTGCCACATTGCGGCGACGGTGGCG
GCGGGTCATGGACGGCGGCGGTCACTCGGCTCGCTCTGGAAGCTCACGGG
TGCGCCTCCTGTTCTGTCACTTTTTTCCCCGTCTGCCGGCTTTCTTTGGG
GAAGTTTTGTCTGCGCGGCTTGTTATGGACTTACCTGGTGTTGAAACGCG
CGTTGTTAGCTTCTCGTGGGGTCTTTGTCCCTGCTCACAATGGCTGCTTT
AATCGTGGCCGCTGA
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