mRNA_P-wetherbeei_contig9631.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9631.1.1
Unique NamemRNA_P-wetherbeei_contig9631.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9631.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9631contigP-wetherbeei_contig9631:140..1461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008617151.1
PFAMsLRR_4,LRR_9
Model size1136
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000406
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Ec32 ortholog descriptionLeucine rich repeat 4
Ec32 orthologEc-14_004270.1
Descriptionaxoneme assembly
Cds size1134
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187102.78623-CDS-P-wetherbeei_contig9631:139..3441683187102.78623-CDS-P-wetherbeei_contig9631:139..344Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9631 140..344 +
1683187102.7997944-CDS-P-wetherbeei_contig9631:530..14591683187102.7997944-CDS-P-wetherbeei_contig9631:530..1459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9631 531..1459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9631.1.1prot_P-wetherbeei_contig9631.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9631 140..1459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9631.1.1

>prot_P-wetherbeei_contig9631.1.1 ID=prot_P-wetherbeei_contig9631.1.1|Name=mRNA_P-wetherbeei_contig9631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=378bp
GAGSGLGSCPLLESLHLAGNPLADESDVFAALVPLPSLVELSLDDAHFGT
CPVVGRTSDGIGGYGGNISERARVHRDEVDAVRDAFTRERRRAEARRRRA
GGRSAALRDAMGAALSELERAVGEGRAAVAAAAAAREVAHRESLAALESD
VAAERAALAAAVAAAVAAEGARRSEEERLLGLLERRAALQRRHFLLTSSL
QHVAAAGGGGTVGSGCAGGGSGRSGNTKSGTGSSAIGKAGMTGGVGNGDA
GGYYGNSCWDGGGGVACHELAEHLPELHHLRDLVRLRQRWATSAVTTVSG
SNSRQPPPLSALPIAAPAPLQVLRACRLYSARLAESAAPFWTTGSDTAAA
DVTSSGKHVAGGGSRAASASSAGRRPPS
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mRNA from alignment at P-wetherbeei_contig9631:140..1461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9631.1.1 ID=mRNA_P-wetherbeei_contig9631.1.1|Name=mRNA_P-wetherbeei_contig9631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1322bp|location=Sequence derived from alignment at P-wetherbeei_contig9631:140..1461+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGCTGGCAGCGGCCTCGGCAGTTGCCCGCTGCTGGAGAGTCTCCACCT
CGCAGGAAATCCGCTCGCCGATGAAAGCGACGTCTTTGCGGCGCTGGTGC
CGTTGCCGTCGCTCGTCGAGCTCTCACTGGACGATGCCCACTTCGGCACC
TGCCCCGTCGTCGGCCGCACTTCCGACGGCATTGGCGGTTACGGCGGCAA
TATCTGTTGTGACGGCGGCGGCGACAATGGTAGAAGCGGGAATAGAAGCG
GCAGCAGAAGTGGCAGTAGCGGCAGTGATGACGTCGGCGGCAGCTGGCGC
GGCCGCGCCGTCCGGGCGCTGCCCCGCCTGCGGCGGCTGGACGGCGTCGA
AGTCGCTGGCAATGAGCGTGCCGCTGCCGCCGCCGCCGAAGCCGAGCGCG
CCCGCGTCCACCGCGACGAAGTCGACGCGGTGCGAGACGCCTTCACACGG
GAGCGGCGCCGCGCCGAGGCCCGGCGCCGCCGCGCCGGTGGCCGCTCCGC
TGCCCTGCGGGATGCCATGGGCGCCGCGTTATCAGAGCTCGAACGGGCGG
TCGGGGAGGGCCGCGCCGCCGTTGCTGCCGCGGCGGCGGCGCGGGAGGTG
GCGCACCGCGAGTCGCTGGCGGCGCTCGAGTCCGACGTGGCGGCGGAACG
GGCGGCGTTGGCGGCGGCGGTGGCGGCCGCTGTGGCCGCCGAGGGCGCAC
GCCGCTCGGAGGAGGAGCGGCTGCTGGGGCTGCTGGAGCGGCGAGCGGCG
CTGCAGCGGCGGCACTTTCTGCTGACGTCGTCCCTGCAGCACGTCGCTGC
CGCCGGCGGCGGCGGGACCGTTGGAAGTGGCTGTGCTGGCGGCGGCAGCG
GACGAAGCGGCAACACCAAAAGCGGCACTGGCAGCTCGGCGATTGGTAAA
GCAGGGATGACGGGCGGAGTTGGGAACGGAGATGCGGGCGGCTATTACGG
CAACAGCTGTTGGGATGGCGGGGGCGGCGTGGCGTGCCACGAGCTCGCGG
AGCATCTCCCGGAGCTCCACCACCTGCGGGACCTCGTCCGGTTGCGGCAG
AGATGGGCAACATCAGCGGTGACGACGGTCAGCGGGAGCAACTCGCGACA
ACCGCCGCCGTTGTCGGCGCTGCCGATTGCAGCTCCGGCGCCGCTGCAGG
TGCTGCGCGCCTGCCGGCTGTACAGCGCGCGGCTTGCCGAGAGCGCGGCG
CCGTTCTGGACGACTGGCTCCGATACCGCCGCCGCCGACGTCACTTCGTC
CGGCAAACACGTTGCCGGCGGCGGCAGCAGGGCCGCGTCGGCCTCTTCTG
CAGGGCGACGGCCGCCTTCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9631:140..1461+

>mRNA_P-wetherbeei_contig9631.1.1 ID=mRNA_P-wetherbeei_contig9631.1.1|Name=mRNA_P-wetherbeei_contig9631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1134bp|location=Sequence derived from alignment at P-wetherbeei_contig9631:140..1461+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGCTGGCAGCGGCCTCGGCAGTTGCCCGCTGCTGGAGAGTCTCCACCT
CGCAGGAAATCCGCTCGCCGATGAAAGCGACGTCTTTGCGGCGCTGGTGC
CGTTGCCGTCGCTCGTCGAGCTCTCACTGGACGATGCCCACTTCGGCACC
TGCCCCGTCGTCGGCCGCACTTCCGACGGCATTGGCGGTTACGGCGGCAA
TATCTCCGAGCGCGCCCGCGTCCACCGCGACGAAGTCGACGCGGTGCGAG
ACGCCTTCACACGGGAGCGGCGCCGCGCCGAGGCCCGGCGCCGCCGCGCC
GGTGGCCGCTCCGCTGCCCTGCGGGATGCCATGGGCGCCGCGTTATCAGA
GCTCGAACGGGCGGTCGGGGAGGGCCGCGCCGCCGTTGCTGCCGCGGCGG
CGGCGCGGGAGGTGGCGCACCGCGAGTCGCTGGCGGCGCTCGAGTCCGAC
GTGGCGGCGGAACGGGCGGCGTTGGCGGCGGCGGTGGCGGCCGCTGTGGC
CGCCGAGGGCGCACGCCGCTCGGAGGAGGAGCGGCTGCTGGGGCTGCTGG
AGCGGCGAGCGGCGCTGCAGCGGCGGCACTTTCTGCTGACGTCGTCCCTG
CAGCACGTCGCTGCCGCCGGCGGCGGCGGGACCGTTGGAAGTGGCTGTGC
TGGCGGCGGCAGCGGACGAAGCGGCAACACCAAAAGCGGCACTGGCAGCT
CGGCGATTGGTAAAGCAGGGATGACGGGCGGAGTTGGGAACGGAGATGCG
GGCGGCTATTACGGCAACAGCTGTTGGGATGGCGGGGGCGGCGTGGCGTG
CCACGAGCTCGCGGAGCATCTCCCGGAGCTCCACCACCTGCGGGACCTCG
TCCGGTTGCGGCAGAGATGGGCAACATCAGCGGTGACGACGGTCAGCGGG
AGCAACTCGCGACAACCGCCGCCGTTGTCGGCGCTGCCGATTGCAGCTCC
GGCGCCGCTGCAGGTGCTGCGCGCCTGCCGGCTGTACAGCGCGCGGCTTG
CCGAGAGCGCGGCGCCGTTCTGGACGACTGGCTCCGATACCGCCGCCGCC
GACGTCACTTCGTCCGGCAAACACGTTGCCGGCGGCGGCAGCAGGGCCGC
GTCGGCCTCTTCTGCAGGGCGACGGCCGCCTTCA
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