mRNA_P-wetherbeei_contig9624.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9624.4.1
Unique NamemRNA_P-wetherbeei_contig9624.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Match: A0A1F4FA38_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FA38_9PROT)

HSP 1 Score: 140 bits (354), Expect = 3.630e-42
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   10 MYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAVAIVDDSMDQIAKAMGCPVESLTFDPYPG 243
            MYAIVYKSDGFPICRQ+ GVSPDPVVTWNTEA AKAFI SKGG+ADFQ V + D++MD IA++MGCPVES+TFDPYPG
Sbjct:    1 MYAIVYKSDGFPICRQLAGVSPDPVVTWNTEAAAKAFIASKGGDADFQPVQLTDEAMDTIARSMGCPVESITFDPYPG 78          
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Match: A0A537CZV4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CZV4_9PROT)

HSP 1 Score: 141 bits (355), Expect = 6.260e-42
Identity = 63/80 (78.75%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 GKRMYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAVAIVDDSMDQIAKAMGCPVESLTFDPYP 240
            G RMYAIVYKSDGFPICRQV G+SPDPVVTWNTEA AKAFI+SKG EADFQ + I DD+MD++A+A+GCPVE++TFDPYP
Sbjct:   28 GGRMYAIVYKSDGFPICRQVPGISPDPVVTWNTEAAAKAFISSKGREADFQPLQITDDAMDRLARAIGCPVEAMTFDPYP 107          
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Match: A0A537A252_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A252_9PROT)

HSP 1 Score: 140 bits (352), Expect = 7.330e-42
Identity = 62/78 (79.49%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   10 MYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAVAIVDDSMDQIAKAMGCPVESLTFDPYPG 243
            MYAIVYKSDGFPICRQ+ GV+PDPVVTWNTEA AKAFI SKGG+A+FQ V I DD+MD++AKA+GCPVES+TF+PYPG
Sbjct:    1 MYAIVYKSDGFPICRQMAGVTPDPVVTWNTEAAAKAFIASKGGDAEFQPVQITDDAMDKLAKALGCPVESMTFEPYPG 78          
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Match: A0A536SEY6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SEY6_9PROT)

HSP 1 Score: 139 bits (351), Expect = 1.040e-41
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   10 MYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAVAIVDDSMDQIAKAMGCPVESLTFDPYPG 243
            MYAIVYKSDGFPICRQ+ GVSPDPVVTWNTEA A+AFI SKG +A+FQ V I D+SMD++AKAMGCPVES+TFDPYPG
Sbjct:    1 MYAIVYKSDGFPICRQLPGVSPDPVVTWNTEAAAEAFIRSKGADAEFQPVPITDESMDKLAKAMGCPVESMTFDPYPG 78          
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Match: A0A537BU46_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BU46_9PROT)

HSP 1 Score: 139 bits (349), Expect = 2.100e-41
Identity = 60/78 (76.92%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   10 MYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAVAIVDDSMDQIAKAMGCPVESLTFDPYPG 243
            MYAIVYKSDGFP+CRQV GVSPDPVVTWNTEA AK FI+SKGGEADFQ + + DD+MD++A+A+GCP+E++TFDPYPG
Sbjct:    1 MYAIVYKSDGFPVCRQVPGVSPDPVVTWNTEAAAKDFISSKGGEADFQPLPLTDDAMDRLARAIGCPLEAMTFDPYPG 78          
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Match: A0A1F3YTW5_9PROT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1F3YTW5_9PROT)

HSP 1 Score: 137 bits (345), Expect = 8.570e-41
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 1
Query:   10 MYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAVAIVDDSMDQIAKAMGCPVESLTFDPYP 240
            MYAIVYKSDGFP+C+QV GVSPDPVVTWNTEA AKAFI SKGG+ADFQAV + D++MD+IA+AMGCPVES+ F+PYP
Sbjct:    1 MYAIVYKSDGFPVCQQVAGVSPDPVVTWNTEAAAKAFIASKGGDADFQAVQLTDEAMDKIAQAMGCPVESMMFEPYP 77          
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Match: A0A536XRW2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XRW2_9PROT)

HSP 1 Score: 136 bits (342), Expect = 2.460e-40
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1
Query:   10 MYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAVAIVDDSMDQIAKAMGCPVESLTFDPYP 240
            MYAIVYKSDGFPICRQ+ GVSPDPVVTWNTEA AKAFI+SKGG+ADFQ + I D++MD++AKA+GCPVES+T +PYP
Sbjct:    1 MYAIVYKSDGFPICRQLPGVSPDPVVTWNTEAAAKAFISSKGGDADFQPLPITDETMDKLAKALGCPVESMTLEPYP 77          
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Match: A0A1Q7VMC1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium 13_1_20CM_3_63_8 TaxID=1805040 RepID=A0A1Q7VMC1_9PROT)

HSP 1 Score: 136 bits (342), Expect = 2.460e-40
Identity = 58/78 (74.36%), Postives = 72/78 (92.31%), Query Frame = 1
Query:   10 MYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAVAIVDDSMDQIAKAMGCPVESLTFDPYPG 243
            MYAIVYKSDGFP+CRQ+ GV+PDPVVTWNTEA AKAFI+SKGGEADFQ V + D++MD++AKA+GCP+ ++TF+PYPG
Sbjct:    1 MYAIVYKSDGFPVCRQIPGVTPDPVVTWNTEAAAKAFISSKGGEADFQPVQLTDEAMDKLAKAIGCPLVAMTFEPYPG 78          
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Match: A0A1F4CPW1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CPW1_9PROT)

HSP 1 Score: 135 bits (340), Expect = 4.970e-40
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   10 MYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAVAIVDDSMDQIAKAMGCPVESLTFDPYPG 243
            MYAIVYK+DGFPICR+V GVSPDPVVTWN EA AKAFI+SKGGEA+FQ V + D++MD++A+ +GCPVES+TFDPYPG
Sbjct:    1 MYAIVYKTDGFPICREVAGVSPDPVVTWNNEAAAKAFISSKGGEAEFQPVQLTDEAMDKLAQVIGCPVESMTFDPYPG 78          
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Match: A0A537CY13_9PROT (Uncharacterized protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CY13_9PROT)

HSP 1 Score: 135 bits (339), Expect = 7.060e-40
Identity = 59/77 (76.62%), Postives = 71/77 (92.21%), Query Frame = 1
Query:   10 MYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAVAIVDDSMDQIAKAMGCPVESLTFDPYP 240
            MYAIVYKSDGFPICRQV G+SPDPVVTWNTEA A+AFI+SKG EA+FQ + I DD+MD++A+A+GCPVE++TFDPYP
Sbjct:    1 MYAIVYKSDGFPICRQVPGISPDPVVTWNTEAAARAFISSKGREAEFQPLQITDDAMDRLARAIGCPVEAMTFDPYP 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9624.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4FA38_9PROT3.630e-4280.77Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537CZV4_9PROT6.260e-4278.75Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537A252_9PROT7.330e-4279.49Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A536SEY6_9PROT1.040e-4180.77Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537BU46_9PROT2.100e-4176.92Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F3YTW5_9PROT8.570e-4179.22Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A536XRW2_9PROT2.460e-4077.92Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1Q7VMC1_9PROT2.460e-4074.36Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4CPW1_9PROT4.970e-4075.64Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537CY13_9PROT7.060e-4076.62Uncharacterized protein n=2 Tax=Betaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9624contigP-wetherbeei_contig9624:2151..2396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size246
Hectar predicted targeting categoryother localisation
Exons1
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187102.4907224-CDS-P-wetherbeei_contig9624:2150..23871683187102.4907224-CDS-P-wetherbeei_contig9624:2150..2387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9624 2151..2387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187102.501133-UTR-P-wetherbeei_contig9624:2387..23961683187102.501133-UTR-P-wetherbeei_contig9624:2387..2396Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9624 2388..2396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9624.4.1prot_P-wetherbeei_contig9624.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9624 2151..2387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9624.4.1

>prot_P-wetherbeei_contig9624.4.1 ID=prot_P-wetherbeei_contig9624.4.1|Name=mRNA_P-wetherbeei_contig9624.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MYAIVYKSDGFPICRQVDGVSPDPVVTWNTEAEAKAFITSKGGEADFQAV
AIVDDSMDQIAKAMGCPVESLTFDPYPG*
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mRNA from alignment at P-wetherbeei_contig9624:2151..2396-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9624.4.1 ID=mRNA_P-wetherbeei_contig9624.4.1|Name=mRNA_P-wetherbeei_contig9624.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig9624:2151..2396- (Phaeothamnion wetherbeei SAG_119_79)
GGAAAAAGAATGTACGCGATAGTCTACAAATCCGATGGTTTTCCGATCTG TCGCCAGGTCGACGGCGTGTCCCCGGACCCGGTCGTGACCTGGAACACCG AAGCCGAGGCGAAAGCCTTCATCACCTCGAAGGGCGGCGAGGCGGACTTC CAGGCCGTCGCCATCGTCGACGACTCAATGGACCAGATTGCGAAGGCGAT GGGCTGCCCTGTCGAGTCGCTGACTTTCGATCCCTATCCCGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9624:2151..2396-

>mRNA_P-wetherbeei_contig9624.4.1 ID=mRNA_P-wetherbeei_contig9624.4.1|Name=mRNA_P-wetherbeei_contig9624.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig9624:2151..2396- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGCGATAGTCTACAAATCCGATGGTTTTCCGATCTGTCGCCAGGT
CGACGGCGTGTCCCCGGACCCGGTCGTGACCTGGAACACCGAAGCCGAGG
CGAAAGCCTTCATCACCTCGAAGGGCGGCGAGGCGGACTTCCAGGCCGTC
GCCATCGTCGACGACTCAATGGACCAGATTGCGAAGGCGATGGGCTGCCC
TGTCGAGTCGCTGACTTTCGATCCCTATCCCGGCTGA
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