mRNA_P-wetherbeei_contig9624.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig9624.1.1
Unique Name	mRNA_P-wetherbeei_contig9624.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Match: A0A537BTM7_9PROT (Deoxynucleoside kinase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BTM7_9PROT)

HSP 1 Score: 260 bits (665), Expect = 3.410e-86
Identity = 126/166 (75.90%), Postives = 145/166 (87.35%), Query Frame = 1

Query:    1 RFYEDMARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITLSGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREVGEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIATMRSRREFFNSG 498
            RFY+DMARFALP QLFFLFQRA+ +EPLAQ D+F + TV+DFLLDKD LFARITLSGDELALY +I+E L+PR+PLPDLV+YLQA P TL+ERVRRRG  YER + EDYLA+LAE+Y RFFYHY AAPVLIVNSENLNFVER+AD +LLL R+  M+SRREFFN G
Sbjct:   45 RFYQDMARFALPAQLFFLFQRARMIEPLAQPDMFGKPTVADFLLDKDALFARITLSGDELALYQKIYEALRPRAPLPDLVIYLQAHPRTLIERVRRRGAGYERAISEDYLAVLAESYARFFYHYAAAPVLIVNSENLNFVERDADFELLLSRVRGMKSRREFFNLG 210

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BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Match: A0A536WS98_9PROT (Deoxynucleoside kinase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WS98_9PROT)

HSP 1 Score: 258 bits (659), Expect = 2.200e-85
Identity = 128/166 (77.11%), Postives = 143/166 (86.14%), Query Frame = 1

Query:    1 RFYEDMARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITLSGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREVGEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIATMRSRREFFNSG 498
            RFY+DMAR+ALPTQLFFLFQRA+ +EPLAQ D+F R  V DFLLDKDPLFARITLS DELALY +I+E L+PRSP PDLVVYLQAQP TL+ERVRRR   YER + E+YLALLAE+Y RFFYHY AAPVLIVNSENLNFVEREAD DLL+ R+  M+SRREFFN G
Sbjct:   38 RFYQDMARYALPTQLFFLFQRARLVEPLAQPDMFGRPLVGDFLLDKDPLFARITLSADELALYQKIYEALRPRSPAPDLVVYLQAQPATLIERVRRRARGYERPLSEEYLALLAESYARFFYHYNAAPVLIVNSENLNFVEREADFDLLVSRLRAMKSRREFFNLG 203

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BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Match: A0A537C9N1_9PROT (Deoxynucleoside kinase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537C9N1_9PROT)

HSP 1 Score: 255 bits (651), Expect = 3.120e-83
Identity = 122/166 (73.49%), Postives = 145/166 (87.35%), Query Frame = 1

Query:    1 RFYEDMARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITLSGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREVGEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIATMRSRREFFNSG 498
            RFY+DMARFALP QLFFLFQRA+ +EPL Q D+F + TV+DFLLDKDPLFARITLSGDELALY +I+E L+PR+P+PDLV+YLQAQP TL+ERVRRR   YER + E+YLA+LAE+Y RFFYHY+ APVLIVNSENLNFVER+AD +LL+ R+  M+SRREFFN G
Sbjct:  103 RFYQDMARFALPAQLFFLFQRARMIEPLVQPDMFGKPTVADFLLDKDPLFARITLSGDELALYQKIYEALRPRAPVPDLVIYLQAQPGTLMERVRRRRAGYERGISEEYLAVLAESYARFFYHYSGAPVLIVNSENLNFVERDADFELLVSRVRGMKSRREFFNLG 268

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BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Match: A0A1F3YTZ8_9PROT (Deoxyadenosine kinase n=2 Tax=Bacteria TaxID=2 RepID=A0A1F3YTZ8_9PROT)

HSP 1 Score: 251 bits (642), Expect = 1.500e-82
Identity = 125/166 (75.30%), Postives = 146/166 (87.95%), Query Frame = 1

Query:    1 RFYEDMARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITLSGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREVGEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIATMRSRREFFNSG 498
            RFY+DMARFALPTQLFFLFQRA+QLE LAQ D+F R TVSDFLL+KDPLFARITLSGDE+ALY +I++ ++PR+P PDLVVYLQAQP TL ERVRRR   +ER +GEDYLALLAE Y RFFY+Y+AAPVLIVNSENLNFV R++DL+LLL R+  M+SRREFF+ G
Sbjct:   55 RFYQDMARFALPTQLFFLFQRARQLEALAQPDMFGRPTVSDFLLEKDPLFARITLSGDEMALYQKIYDAIRPRAPAPDLVVYLQAQPATLHERVRRRAAEFERGIGEDYLALLAEGYARFFYNYSAAPVLIVNSENLNFVARDSDLELLLARMRGMKSRREFFSLG 220

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BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Match: A0A1F4FA89_9PROT (Deoxyadenosine kinase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FA89_9PROT)

HSP 1 Score: 250 bits (639), Expect = 3.290e-82
Identity = 121/164 (73.78%), Postives = 142/164 (86.59%), Query Frame = 1

Query:    1 RFYEDMARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITLSGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREVGEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIATMRSRREFFN 492
            RFY+DM RFALP QLFFLFQRA+ LEPLAQ D+F R TVSDFL+DKDPLFAR+TLS DELALY RIFE L+PRSP PDLV+YLQA+ +TL ERVRRR  A+ER + ++YLALLAE+Y RFFYHY AAPVLIVNSENLNFV+R+AD +LL+ R+  M+SRRE+FN
Sbjct:   47 RFYQDMPRFALPAQLFFLFQRARLLEPLAQPDMFGRATVSDFLIDKDPLFARVTLSADELALYQRIFEALRPRSPAPDLVIYLQARHETLAERVRRRAAAHERGISDEYLALLAESYARFFYHYAAAPVLIVNSENLNFVDRDADFELLVSRMKAMKSRREYFN 210

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BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Match: A0A1F4CPC3_9PROT (Deoxyadenosine kinase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CPC3_9PROT)

HSP 1 Score: 248 bits (634), Expect = 1.780e-81
Identity = 122/166 (73.49%), Postives = 138/166 (83.13%), Query Frame = 1

Query:    1 RFYEDMARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITLSGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREVGEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIATMRSRREFFNSG 498
            RFY DM RFALPTQLFFLFQRA+ LEPLAQ D+F R  + DFLLDKDPLFARITLS DELALY +I+E L+PRS  PDLV+YLQAQP TLVERVRRR   YER + ++YLALLAE+Y RFFYHY  APVLIVNSENLNFVER+ D +LL+ R+  M+SRREFFN G
Sbjct:   45 RFYHDMPRFALPTQLFFLFQRARLLEPLAQPDMFGRPAIGDFLLDKDPLFARITLSADELALYQKIYEALRPRSSAPDLVIYLQAQPATLVERVRRRAAGYERGISDEYLALLAESYARFFYHYDGAPVLIVNSENLNFVERDEDFELLVSRVRRMKSRREFFNLG 210

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BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Match: A0A0S8B2R4_9PROT (Deoxyadenosine kinase n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B2R4_9PROT)

HSP 1 Score: 240 bits (613), Expect = 2.870e-78
Identity = 114/164 (69.51%), Postives = 143/164 (87.20%), Query Frame = 1

Query:    1 RFYEDMARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITLSGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREVGEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIATMRSRREFFN 492
            RFY+D AR+ALPTQLFFLFQRA+QLEPLAQ DLF+  TV+DFL+DKDPLFA +TLSGDELALY R++E+L+P++P PDLV+YLQA  +TL+ERV+ R   +ER + E YLALLAE+Y RFFYHYTAAPVLIVNS++LNFV+R+AD +LL+ R+  MR+RREFF+
Sbjct:   46 RFYQDRARYALPTQLFFLFQRARQLEPLAQRDLFNHATVADFLIDKDPLFASLTLSGDELALYQRVYESLRPQAPAPDLVIYLQAPAETLIERVQHRAAPFERGIDEAYLALLAESYARFFYHYTAAPVLIVNSQSLNFVDRDADFELLVERLRGMRARREFFS 209

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BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Match: A0A1F4A118_9PROT (Deoxyadenosine kinase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12 TaxID=1797487 RepID=A0A1F4A118_9PROT)

HSP 1 Score: 240 bits (612), Expect = 4.360e-78
Identity = 117/166 (70.48%), Postives = 139/166 (83.73%), Query Frame = 1

Query:    1 RFYEDMARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITLSGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREVGEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIATMRSRREFFNSG 498
            RFY+DM+R+ALPTQLFFLFQR  QL  LAQ DLF   TV DFLL+KDPLFAR+TLS +EL LY RIF+TLKP +P PDLV+YLQAQPDTL ERVR RGV YE+ + E+YLALLA++Y+RFFYHY A+PVLIVNSE LNFV ++ DL+LL+ RIA++R  REFFN G
Sbjct:   47 RFYQDMSRYALPTQLFFLFQRINQLRELAQMDLFRHTTVCDFLLEKDPLFARLTLSSEELHLYQRIFDTLKPHAPGPDLVIYLQAQPDTLYERVRMRGVEYEQPISEEYLALLADSYSRFFYHYNASPVLIVNSERLNFVRKDNDLELLVQRIASLRGNREFFNFG 212

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BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Match: A0A1F4AX16_9PROT (Deoxyadenosine kinase n=4 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4AX16_9PROT)

HSP 1 Score: 239 bits (610), Expect = 8.780e-78
Identity = 121/166 (72.89%), Postives = 139/166 (83.73%), Query Frame = 1

Query:    1 RFYEDMARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITLSGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREVGEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIATMRSRREFFNSG 498
            RFY+DM R AL TQLFFLFQR  QL  LAQ DLF+RVTVSDFLLDKDPLFAR+TLS DE  LY +IFE L+P++P PDLVVYLQAQP+TL +RVRRRGV YER +  +YLALLA++Y+RFFYHY+ +PVLIVNSE LNFV++E DLDLLL RIA MR  REFFN G
Sbjct:   47 RFYQDMPRHALSTQLFFLFQRINQLRELAQPDLFNRVTVSDFLLDKDPLFARLTLSSDEWRLYQQIFEALQPQAPKPDLVVYLQAQPETLYDRVRRRGVDYERPITGEYLALLADSYSRFFYHYSGSPVLIVNSERLNFVKQEGDLDLLLARIAGMRGTREFFNFG 212

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BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Match: A0A536SWC6_9PROT (Deoxynucleoside kinase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SWC6_9PROT)

HSP 1 Score: 239 bits (610), Expect = 8.780e-78
Identity = 117/166 (70.48%), Postives = 138/166 (83.13%), Query Frame = 1

Query:    1 RFYEDMARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITLSGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREVGEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIATMRSRREFFNSG 498
            RFY+DMARFALPTQLFFLFQR  QL  LAQ DLF+R+TV DFLL+KDPLFAR+TLSGDEL LY +IF+ LKP++P PDLV+YLQAQP TL ERVRRRGV +ER +  +YLALLA++Y RFFYH+  +PVLIVNSE LNFV  + DLDLL+ R+  MR +REFFN G
Sbjct:   47 RFYQDMARFALPTQLFFLFQRIGQLRELAQMDLFNRLTVCDFLLEKDPLFARLTLSGDELHLYQQIFDALKPQAPRPDLVIYLQAQPATLYERVRRRGVEFERPISAEYLALLADSYNRFFYHFNGSPVLIVNSERLNFVSDDRDLDLLIERVGAMRGQREFFNWG 212

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig9624.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A537BTM7_9PROT	3.410e-86	75.90	Deoxynucleoside kinase n=2 Tax=Betaproteobacteria ...	[more]
A0A536WS98_9PROT	2.200e-85	77.11	Deoxynucleoside kinase n=2 Tax=Betaproteobacteria ...	[more]
A0A537C9N1_9PROT	3.120e-83	73.49	Deoxynucleoside kinase n=2 Tax=Betaproteobacteria ...	[more]
A0A1F3YTZ8_9PROT	1.500e-82	75.30	Deoxyadenosine kinase n=2 Tax=Bacteria TaxID=2 Rep...	[more]
A0A1F4FA89_9PROT	3.290e-82	73.78	Deoxyadenosine kinase n=1 Tax=Betaproteobacteria b...	[more]
A0A1F4CPC3_9PROT	1.780e-81	73.49	Deoxyadenosine kinase n=1 Tax=Betaproteobacteria b...	[more]
A0A0S8B2R4_9PROT	2.870e-78	69.51	Deoxyadenosine kinase n=1 Tax=Betaproteobacteria b...	[more]
A0A1F4A118_9PROT	4.360e-78	70.48	Deoxyadenosine kinase n=1 Tax=Betaproteobacteria b...	[more]
A0A1F4AX16_9PROT	8.780e-78	72.89	Deoxyadenosine kinase n=4 Tax=unclassified Betapro...	[more]
A0A536SWC6_9PROT	8.780e-78	70.48	Deoxynucleoside kinase n=2 Tax=Betaproteobacteria ...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig9624	contig	P-wetherbeei_contig9624:6..509 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	1095769.CAHF01000013_gene3343
Preferred name	dgk
PFAMs	dNK
Model size	504
Max annot lvl	28216\|Betaproteobacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	7.32e-68
EggNOG OGs	COG1428@1\|root,COG1428@2\|Bacteria,1RC50@1224\|Proteobacteria,2VQ8U@28216\|Betaproteobacteria,473B3@75682\|Oxalobacteraceae
Description	Deoxynucleoside kinase
Cds size	489
COG category	F

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683187102.406714-UTR-P-wetherbeei_contig9624:5..20	1683187102.406714-UTR-P-wetherbeei_contig9624:5..20	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig9624 6..20 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683187102.4177246-CDS-P-wetherbeei_contig9624:20..509	1683187102.4177246-CDS-P-wetherbeei_contig9624:20..509	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig9624 21..509 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig9624.1.1	prot_P-wetherbeei_contig9624.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig9624 21..509 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig9624:6..509+
coding sequence from alignment at P-wetherbeei_contig9624:6..509+

protein sequence of mRNA_P-wetherbeei_contig9624.1.1

>prot_P-wetherbeei_contig9624.1.1 ID=prot_P-wetherbeei_contig9624.1.1|Name=mRNA_P-wetherbeei_contig9624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MARFALPTQLFFLFQRAKQLEPLAQTDLFSRVTVSDFLLDKDPLFARITL
SGDELALYDRIFETLKPRSPLPDLVVYLQAQPDTLVERVRRRGVAYEREV
GEDYLALLAETYTRFFYHYTAAPVLIVNSENLNFVEREADLDLLLHRIAT
MRSRREFFNSGG*

mRNA from alignment at P-wetherbeei_contig9624:6..509+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig9624.1.1 ID=mRNA_P-wetherbeei_contig9624.1.1|Name=mRNA_P-wetherbeei_contig9624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig9624:6..509+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCTACGAGGACATGGCGCGTTTCGCGCTGCCCACCCAGTTGTTCTT
CCTGTTCCAGCGCGCCAAGCAGCTCGAGCCGCTCGCGCAGACGGACCTGT
TCAGCCGGGTCACGGTGTCGGATTTCCTGCTCGACAAGGACCCGCTGTTC
GCACGCATCACGCTGTCAGGCGACGAACTCGCCCTGTACGACCGCATCTT
CGAGACCCTGAAGCCGCGCTCGCCGCTGCCCGACCTCGTGGTCTACCTGC
AGGCCCAGCCCGACACGCTCGTCGAGCGCGTCCGCCGGCGCGGGGTCGCA
TACGAGAGGGAGGTGGGCGAGGACTACCTCGCGCTGCTCGCCGAGACCTA
CACCCGCTTTTTCTACCACTACACGGCCGCACCGGTGCTGATCGTGAATT
CCGAGAACCTGAATTTCGTCGAGCGCGAAGCGGACCTCGACCTGCTGCTG
CACCGCATCGCTACAATGCGCAGCCGTCGCGAATTCTTCAACAGCGGCGG
CTGA

Coding sequence (CDS) from alignment at P-wetherbeei_contig9624:6..509+

>mRNA_P-wetherbeei_contig9624.1.1 ID=mRNA_P-wetherbeei_contig9624.1.1|Name=mRNA_P-wetherbeei_contig9624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig9624:6..509+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGTTTCGCGCTGCCCACCCAGTTGTTCTTCCTGTTCCAGCGCGC
CAAGCAGCTCGAGCCGCTCGCGCAGACGGACCTGTTCAGCCGGGTCACGG
TGTCGGATTTCCTGCTCGACAAGGACCCGCTGTTCGCACGCATCACGCTG
TCAGGCGACGAACTCGCCCTGTACGACCGCATCTTCGAGACCCTGAAGCC
GCGCTCGCCGCTGCCCGACCTCGTGGTCTACCTGCAGGCCCAGCCCGACA
CGCTCGTCGAGCGCGTCCGCCGGCGCGGGGTCGCATACGAGAGGGAGGTG
GGCGAGGACTACCTCGCGCTGCTCGCCGAGACCTACACCCGCTTTTTCTA
CCACTACACGGCCGCACCGGTGCTGATCGTGAATTCCGAGAACCTGAATT
TCGTCGAGCGCGAAGCGGACCTCGACCTGCTGCTGCACCGCATCGCTACA
ATGCGCAGCCGTCGCGAATTCTTCAACAGCGGCGGCTGA